Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15975 and HMPREF1058_RS15970 are separated by 67 nucleotides HMPREF1058_RS15970 and HMPREF1058_RS15965 are separated by 12 nucleotides
HMPREF1058_RS15975: HMPREF1058_RS15975 - saccharopine dehydrogenase family protein, at 793,011 to 794,204
_RS15975
HMPREF1058_RS15970: HMPREF1058_RS15970 - thioredoxin-dependent thiol peroxidase, at 794,272 to 794,718
_RS15970
HMPREF1058_RS15965: HMPREF1058_RS15965 - recombinase RecA, at 794,731 to 795,774
_RS15965
Position (kb) 794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 793.326 kb on + strand, within HMPREF1058_RS15975 at 793.376 kb on + strand, within HMPREF1058_RS15975 at 793.376 kb on + strand, within HMPREF1058_RS15975 at 793.438 kb on + strand, within HMPREF1058_RS15975 at 793.492 kb on - strand, within HMPREF1058_RS15975 at 793.922 kb on + strand, within HMPREF1058_RS15975 at 793.964 kb on + strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.972 kb on - strand, within HMPREF1058_RS15975 at 793.978 kb on - strand, within HMPREF1058_RS15975 at 794.030 kb on - strand, within HMPREF1058_RS15975 at 794.034 kb on + strand, within HMPREF1058_RS15975 at 794.036 kb on + strand, within HMPREF1058_RS15975 at 794.037 kb on - strand, within HMPREF1058_RS15975 at 794.113 kb on + strand at 794.179 kb on + strand at 794.224 kb on + strand at 794.224 kb on + strand at 794.280 kb on - strand at 794.360 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.427 kb on + strand, within HMPREF1058_RS15970 at 794.522 kb on + strand, within HMPREF1058_RS15970 at 794.596 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.609 kb on - strand, within HMPREF1058_RS15970 at 794.626 kb on - strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.665 kb on - strand, within HMPREF1058_RS15970 at 794.964 kb on - strand, within HMPREF1058_RS15965 at 795.115 kb on - strand, within HMPREF1058_RS15965 at 795.119 kb on + strand, within HMPREF1058_RS15965 at 795.252 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.345 kb on + strand, within HMPREF1058_RS15965 at 795.609 kb on - strand, within HMPREF1058_RS15965 at 795.620 kb on + strand, within HMPREF1058_RS15965 at 795.650 kb on - strand, within HMPREF1058_RS15965
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 793,326 + HMPREF1058_RS15975 0.26 -2.0 793,376 + HMPREF1058_RS15975 0.31 -2.9 793,376 + HMPREF1058_RS15975 0.31 -2.4 793,438 + HMPREF1058_RS15975 0.36 -2.0 793,492 - HMPREF1058_RS15975 0.40 -2.4 793,922 + HMPREF1058_RS15975 0.76 -2.0 793,964 + HMPREF1058_RS15975 0.80 -3.7 793,969 - HMPREF1058_RS15975 0.80 -0.0 793,969 - HMPREF1058_RS15975 0.80 -0.0 793,969 - HMPREF1058_RS15975 0.80 -0.0 793,969 - HMPREF1058_RS15975 0.80 -2.4 793,972 - HMPREF1058_RS15975 0.80 -2.0 793,978 - HMPREF1058_RS15975 0.81 -0.0 794,030 - HMPREF1058_RS15975 0.85 -2.9 794,034 + HMPREF1058_RS15975 0.86 -1.4 794,036 + HMPREF1058_RS15975 0.86 -0.8 794,037 - HMPREF1058_RS15975 0.86 -1.6 794,113 + -1.6 794,179 + -1.2 794,224 + -2.1 794,224 + -0.1 794,280 - -1.4 794,360 + HMPREF1058_RS15970 0.20 +0.9 794,363 + HMPREF1058_RS15970 0.20 -1.1 794,363 + HMPREF1058_RS15970 0.20 -0.8 794,427 + HMPREF1058_RS15970 0.35 +4.9 794,522 + HMPREF1058_RS15970 0.56 +0.8 794,596 + HMPREF1058_RS15970 0.72 -1.8 794,608 + HMPREF1058_RS15970 0.75 -1.6 794,608 + HMPREF1058_RS15970 0.75 -2.0 794,609 - HMPREF1058_RS15970 0.75 -0.1 794,626 - HMPREF1058_RS15970 0.79 -1.1 794,664 + HMPREF1058_RS15970 0.88 +0.8 794,664 + HMPREF1058_RS15970 0.88 +1.9 794,665 - HMPREF1058_RS15970 0.88 -2.6 794,964 - HMPREF1058_RS15965 0.22 -1.6 795,115 - HMPREF1058_RS15965 0.37 -1.6 795,119 + HMPREF1058_RS15965 0.37 -1.6 795,252 + HMPREF1058_RS15965 0.50 +1.3 795,312 + HMPREF1058_RS15965 0.56 -2.6 795,312 + HMPREF1058_RS15965 0.56 -1.6 795,345 + HMPREF1058_RS15965 0.59 -2.6 795,609 - HMPREF1058_RS15965 0.84 -1.6 795,620 + HMPREF1058_RS15965 0.85 -2.4 795,650 - HMPREF1058_RS15965 0.88 -1.0
Or see this region's nucleotide sequence