Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15105

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
1,010,602	+		HMPREF1058_RS15110	0.82	-1.3
1,010,633	+		HMPREF1058_RS15110	0.82	-1.1
1,010,686	+		HMPREF1058_RS15110	0.84	-0.7
1,010,811	+		HMPREF1058_RS15110	0.87	-0.7
1,010,811	+		HMPREF1058_RS15110	0.87	+3.0
1,010,850	+		HMPREF1058_RS15110	0.88	-0.9
1,010,851	-		HMPREF1058_RS15110	0.88	-0.4
1,010,908	-		HMPREF1058_RS15110	0.89	+0.1
1,010,943	+				-0.5
1,010,958	+				+1.1
1,010,958	+				-0.2
1,010,961	+				-1.1
1,010,987	-				-0.8
1,011,049	+				-2.4
1,011,079	+				+1.5
1,011,082	-				-0.3
1,011,086	+				-0.4
1,011,128	-				-0.8
1,011,205	+				-0.8
1,011,206	-				-0.0
1,011,207	+				+0.0
1,011,207	+				-0.6
1,011,207	+				-0.1
1,011,211	-				+1.5
1,011,211	-				-2.3
1,011,211	-				+0.6
1,011,212	+				+3.4
1,011,213	-				-0.9
1,011,214	+				-0.1
1,011,215	-				-1.1
1,011,215	-				-0.5
1,011,215	-				+1.3
1,011,246	+				-0.2
1,011,247	-				+0.3
1,011,247	-				+0.2
1,011,248	+				-1.1
1,011,249	-				+1.3
1,011,294	+				+0.9
1,011,294	+				+1.5
1,011,294	+				+0.3
1,011,294	+				-1.2
1,011,420	+				+0.7
1,011,427	+				-2.4
1,011,427	+				+1.6
1,011,428	-				-0.2
1,011,470	-				-2.4
1,011,490	-				-0.7
1,011,648	+				-2.7
1,011,662	-				+1.0
1,011,674	+				+3.4
1,011,675	-				+0.7
1,011,703	+				+0.1
1,011,703	+				-0.1
1,011,704	-				-1.2
1,011,721	+				-1.7
1,011,746	+		HMPREF1058_RS15105	0.11	+1.2
1,011,753	+		HMPREF1058_RS15105	0.11	+1.1
1,011,782	+		HMPREF1058_RS15105	0.13	+0.1
1,011,783	-		HMPREF1058_RS15105	0.13	+0.2
1,011,783	-		HMPREF1058_RS15105	0.13	-0.7
1,011,783	-		HMPREF1058_RS15105	0.13	+0.7
1,011,872	+		HMPREF1058_RS15105	0.17	+0.6
1,011,872	+		HMPREF1058_RS15105	0.17	+1.0
1,011,923	+		HMPREF1058_RS15105	0.20	-1.1
1,011,924	-		HMPREF1058_RS15105	0.20	-0.7
1,011,924	-		HMPREF1058_RS15105	0.20	-0.1
1,012,021	-		HMPREF1058_RS15105	0.25	+1.4
1,012,023	-		HMPREF1058_RS15105	0.25	-1.9
1,012,142	-		HMPREF1058_RS15105	0.31	-3.0
1,012,156	-		HMPREF1058_RS15105	0.32	+5.3
1,012,177	-		HMPREF1058_RS15105	0.33	-0.1
1,012,179	-		HMPREF1058_RS15105	0.33	-1.1
1,012,363	+		HMPREF1058_RS15105	0.42	+1.1
1,012,427	-		HMPREF1058_RS15105	0.45	+3.0
1,012,484	+		HMPREF1058_RS15105	0.48	-1.6
1,012,485	-		HMPREF1058_RS15105	0.48	-2.1
1,012,526	+		HMPREF1058_RS15105	0.50	-0.4
1,012,527	-		HMPREF1058_RS15105	0.50	+2.2
1,012,527	-		HMPREF1058_RS15105	0.50	-0.8
1,012,530	+		HMPREF1058_RS15105	0.50	+1.7
1,012,530	+		HMPREF1058_RS15105	0.50	+3.9
1,012,647	+		HMPREF1058_RS15105	0.56	+2.5
1,012,648	-		HMPREF1058_RS15105	0.56	+0.5
1,012,666	-		HMPREF1058_RS15105	0.57	+1.2
1,012,722	+		HMPREF1058_RS15105	0.60	-2.3
1,012,785	+		HMPREF1058_RS15105	0.63	-1.1
1,012,786	-		HMPREF1058_RS15105	0.63	+3.9
1,012,786	-		HMPREF1058_RS15105	0.63	+0.1
1,012,826	-		HMPREF1058_RS15105	0.65	-0.1
1,012,826	-		HMPREF1058_RS15105	0.65	-0.8
1,012,865	+		HMPREF1058_RS15105	0.67	+1.5
1,012,903	-		HMPREF1058_RS15105	0.69	+1.9
1,012,911	+		HMPREF1058_RS15105	0.70	+0.3
1,012,989	+		HMPREF1058_RS15105	0.74	-1.1
1,012,989	+		HMPREF1058_RS15105	0.74	+0.8
1,012,989	+		HMPREF1058_RS15105	0.74	+2.4
1,012,989	+		HMPREF1058_RS15105	0.74	+1.1
1,012,990	-		HMPREF1058_RS15105	0.74	-1.0
1,012,992	-		HMPREF1058_RS15105	0.74	+0.3
1,012,995	+		HMPREF1058_RS15105	0.74	-0.4
1,012,996	-		HMPREF1058_RS15105	0.74	-0.6
1,012,996	-		HMPREF1058_RS15105	0.74	+0.7
1,012,996	-		HMPREF1058_RS15105	0.74	+2.3
1,013,012	+		HMPREF1058_RS15105	0.75	+1.5
1,013,042	+		HMPREF1058_RS15105	0.76	-1.1
1,013,042	+		HMPREF1058_RS15105	0.76	+0.9
1,013,042	+		HMPREF1058_RS15105	0.76	+1.4
1,013,052	+		HMPREF1058_RS15105	0.77	-0.6
1,013,141	-		HMPREF1058_RS15105	0.81	+1.4
1,013,151	+		HMPREF1058_RS15105	0.82	+2.1
1,013,152	-		HMPREF1058_RS15105	0.82	-0.7
1,013,184	+		HMPREF1058_RS15105	0.84	+0.8
1,013,194	+		HMPREF1058_RS15105	0.84	+0.4
1,013,194	+		HMPREF1058_RS15105	0.84	-1.7
1,013,198	-		HMPREF1058_RS15105	0.84	+0.5
1,013,207	+		HMPREF1058_RS15105	0.85	+0.8
1,013,371	+				-2.1
1,013,379	-				+0.6
1,013,403	+				-0.1
1,013,403	+				-0.0
1,013,403	+				-0.9
1,013,403	+				-2.4
1,013,403	+				+0.4
1,013,404	-				-2.1
1,013,546	-				-2.1
1,013,602	-				-2.2
1,013,624	+				-2.7
1,013,624	+				-1.7
1,013,708	-		HMPREF1058_RS15100	0.13	-2.7
1,013,745	+		HMPREF1058_RS15100	0.16	+0.5
1,013,745	+		HMPREF1058_RS15100	0.16	-0.1
1,013,746	-		HMPREF1058_RS15100	0.16	+0.7
1,013,747	+		HMPREF1058_RS15100	0.16	-0.7
1,013,854	-		HMPREF1058_RS15100	0.23	-1.7
1,013,885	+		HMPREF1058_RS15100	0.25	+0.8
1,013,890	+		HMPREF1058_RS15100	0.25	+1.5
1,013,891	-		HMPREF1058_RS15100	0.25	-2.4
1,013,930	-		HMPREF1058_RS15100	0.28	-2.1
1,013,994	+		HMPREF1058_RS15100	0.32	-0.4
1,013,995	-		HMPREF1058_RS15100	0.32	-1.6
1,013,995	-		HMPREF1058_RS15100	0.32	-2.1
1,014,138	-		HMPREF1058_RS15100	0.42	+0.3
1,014,272	+		HMPREF1058_RS15100	0.51	+1.1
1,014,272	+		HMPREF1058_RS15100	0.51	+5.4
1,014,273	-		HMPREF1058_RS15100	0.51	-0.5
1,014,273	-		HMPREF1058_RS15100	0.51	+1.2
1,014,327	-		HMPREF1058_RS15100	0.55	-0.1
1,014,391	-		HMPREF1058_RS15100	0.59	-2.1
1,014,444	-		HMPREF1058_RS15100	0.63	-1.7