Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14270

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14280 and HMPREF1058_RS14275 are separated by 83 nucleotidesHMPREF1058_RS14275 and HMPREF1058_RS14270 are separated by 3 nucleotidesHMPREF1058_RS14270 and HMPREF1058_RS14265 are separated by 127 nucleotides HMPREF1058_RS14280: HMPREF1058_RS14280 - thymidylate synthase, at 1,245,597 to 1,246,391 _RS14280 HMPREF1058_RS14275: HMPREF1058_RS14275 - dihydrofolate reductase, at 1,246,475 to 1,246,969 _RS14275 HMPREF1058_RS14270: HMPREF1058_RS14270 - Lrp/AsnC ligand binding domain-containing protein, at 1,246,973 to 1,247,449 _RS14270 HMPREF1058_RS14265: HMPREF1058_RS14265 - IgA Peptidase M64, at 1,247,577 to 1,248,863 _RS14265 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1246.420 kb on + strandat 1246.420 kb on + strandat 1246.474 kb on + strandat 1246.974 kb on + strandat 1246.975 kb on - strandat 1246.999 kb on + strandat 1247.033 kb on + strand, within HMPREF1058_RS14270at 1247.033 kb on + strand, within HMPREF1058_RS14270at 1247.036 kb on - strand, within HMPREF1058_RS14270at 1247.039 kb on - strand, within HMPREF1058_RS14270at 1247.085 kb on - strand, within HMPREF1058_RS14270at 1247.115 kb on + strand, within HMPREF1058_RS14270at 1247.136 kb on + strand, within HMPREF1058_RS14270at 1247.163 kb on - strand, within HMPREF1058_RS14270at 1247.227 kb on - strand, within HMPREF1058_RS14270at 1247.227 kb on - strand, within HMPREF1058_RS14270at 1247.236 kb on + strand, within HMPREF1058_RS14270at 1247.238 kb on + strand, within HMPREF1058_RS14270at 1247.238 kb on + strand, within HMPREF1058_RS14270at 1247.239 kb on - strand, within HMPREF1058_RS14270at 1247.239 kb on - strand, within HMPREF1058_RS14270at 1247.280 kb on + strand, within HMPREF1058_RS14270at 1247.281 kb on - strand, within HMPREF1058_RS14270at 1247.281 kb on - strand, within HMPREF1058_RS14270at 1247.660 kb on + strandat 1247.661 kb on - strandat 1247.680 kb on - strandat 1247.713 kb on + strand, within HMPREF1058_RS14265at 1247.714 kb on - strand, within HMPREF1058_RS14265at 1247.959 kb on + strand, within HMPREF1058_RS14265at 1247.975 kb on - strand, within HMPREF1058_RS14265at 1247.975 kb on - strand, within HMPREF1058_RS14265at 1247.981 kb on + strand, within HMPREF1058_RS14265at 1247.986 kb on + strand, within HMPREF1058_RS14265at 1247.986 kb on + strand, within HMPREF1058_RS14265at 1247.987 kb on - strand, within HMPREF1058_RS14265at 1248.054 kb on - strand, within HMPREF1058_RS14265at 1248.109 kb on + strand, within HMPREF1058_RS14265at 1248.130 kb on - strand, within HMPREF1058_RS14265at 1248.150 kb on - strand, within HMPREF1058_RS14265at 1248.151 kb on + strand, within HMPREF1058_RS14265at 1248.299 kb on + strand, within HMPREF1058_RS14265at 1248.307 kb on + strand, within HMPREF1058_RS14265at 1248.330 kb on + strand, within HMPREF1058_RS14265at 1248.411 kb on - strand, within HMPREF1058_RS14265

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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1,246,420 + +2.5
1,246,420 + +1.4
1,246,474 + -0.1
1,246,974 + -0.2
1,246,975 - +0.2
1,246,999 + +2.5
1,247,033 + HMPREF1058_RS14270 0.13 -1.3
1,247,033 + HMPREF1058_RS14270 0.13 -0.4
1,247,036 - HMPREF1058_RS14270 0.13 -0.9
1,247,039 - HMPREF1058_RS14270 0.14 -0.1
1,247,085 - HMPREF1058_RS14270 0.23 +1.6
1,247,115 + HMPREF1058_RS14270 0.30 +2.1
1,247,136 + HMPREF1058_RS14270 0.34 +0.1
1,247,163 - HMPREF1058_RS14270 0.40 +1.8
1,247,227 - HMPREF1058_RS14270 0.53 -0.1
1,247,227 - HMPREF1058_RS14270 0.53 +1.8
1,247,236 + HMPREF1058_RS14270 0.55 +1.3
1,247,238 + HMPREF1058_RS14270 0.56 -0.1
1,247,238 + HMPREF1058_RS14270 0.56 +2.4
1,247,239 - HMPREF1058_RS14270 0.56 +2.4
1,247,239 - HMPREF1058_RS14270 0.56 +1.8
1,247,280 + HMPREF1058_RS14270 0.64 +0.9
1,247,281 - HMPREF1058_RS14270 0.65 +2.2
1,247,281 - HMPREF1058_RS14270 0.65 -0.8
1,247,660 + -2.4
1,247,661 - -3.3
1,247,680 - -1.4
1,247,713 + HMPREF1058_RS14265 0.11 +0.9
1,247,714 - HMPREF1058_RS14265 0.11 -0.8
1,247,959 + HMPREF1058_RS14265 0.30 +0.5
1,247,975 - HMPREF1058_RS14265 0.31 +2.8
1,247,975 - HMPREF1058_RS14265 0.31 +0.8
1,247,981 + HMPREF1058_RS14265 0.31 -0.1
1,247,986 + HMPREF1058_RS14265 0.32 -0.1
1,247,986 + HMPREF1058_RS14265 0.32 -0.4
1,247,987 - HMPREF1058_RS14265 0.32 +0.9
1,248,054 - HMPREF1058_RS14265 0.37 -0.1
1,248,109 + HMPREF1058_RS14265 0.41 -0.1
1,248,130 - HMPREF1058_RS14265 0.43 -2.9
1,248,150 - HMPREF1058_RS14265 0.45 -0.2
1,248,151 + HMPREF1058_RS14265 0.45 -0.4
1,248,299 + HMPREF1058_RS14265 0.56 -0.9
1,248,307 + HMPREF1058_RS14265 0.57 +4.0
1,248,330 + HMPREF1058_RS14265 0.59 -0.1
1,248,411 - HMPREF1058_RS14265 0.65 -2.7

Or see this region's nucleotide sequence