Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13580

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
1,428,360	-				-1.0
1,428,386	+				-1.0
1,428,386	+				-1.1
1,428,423	-				-2.6
1,428,423	-				-1.0
1,428,423	-				-0.2
1,428,447	-				+0.6
1,428,479	+				+1.0
1,428,480	-				-0.2
1,428,681	+		HMPREF1058_RS13585	0.36	+0.2
1,428,681	+		HMPREF1058_RS13585	0.36	+1.0
1,428,682	-		HMPREF1058_RS13585	0.36	-0.7
1,428,682	-		HMPREF1058_RS13585	0.36	+0.1
1,428,682	-		HMPREF1058_RS13585	0.36	-1.8
1,428,682	-		HMPREF1058_RS13585	0.36	+1.4
1,428,684	-		HMPREF1058_RS13585	0.37	-0.2
1,428,687	-		HMPREF1058_RS13585	0.37	-0.1
1,428,689	-		HMPREF1058_RS13585	0.37	+2.6
1,428,706	+		HMPREF1058_RS13585	0.40	+0.8
1,428,713	+				-1.2
1,428,713	+		HMPREF1058_RS13585	0.41	-1.2
1,428,738	+		HMPREF1058_RS13585	0.44	-1.8
1,428,739	-		HMPREF1058_RS13585	0.44	-3.0
1,428,739	-		HMPREF1058_RS13585	0.44	-3.2
1,428,742	+		HMPREF1058_RS13585	0.45	-0.8
1,428,743	-		HMPREF1058_RS13585	0.45	+1.1
1,428,786	-		HMPREF1058_RS13585	0.51	+0.7
1,428,883	-		HMPREF1058_RS13585	0.64	-1.8
1,428,899	+		HMPREF1058_RS13585	0.66	-1.0
1,428,988	+		HMPREF1058_RS13585	0.78	+0.4
1,429,022	+		HMPREF1058_RS13585	0.83	-2.2
1,429,023	-		HMPREF1058_RS13585	0.83	+0.1
1,429,023	-		HMPREF1058_RS13585	0.83	-3.0
1,429,023	-		HMPREF1058_RS13585	0.83	-0.8
1,429,023	-		HMPREF1058_RS13585	0.83	-1.8
1,429,119	-				-1.0
1,429,127	+				-2.6
1,429,180	-				-0.2
1,429,234	+				-0.2
1,429,235	-				-0.2
1,429,285	+				-3.3
1,429,404	-				+0.3
1,429,436	+				+2.0
1,429,436	+				+2.6
1,429,440	+				+2.0
1,429,441	-				-0.2
1,429,441	-				+2.1
1,429,446	-				+2.3
1,429,446	-				+1.7
1,429,448	-				+2.0
1,429,463	+				+3.4
1,429,467	-				+2.1
1,429,469	+				+2.1
1,429,469	-				+2.8
1,429,645	-				+2.1
1,429,731	-				+0.8
1,429,750	+				-3.8
1,429,751	-				-1.8
1,429,751	-				-0.9
1,429,833	-		HMPREF1058_RS13580	0.11	+4.5
1,429,834	+		HMPREF1058_RS13580	0.11	+4.3
1,429,835	-		HMPREF1058_RS13580	0.11	+2.3
1,429,835	-		HMPREF1058_RS13580	0.11	+2.3
1,429,868	+		HMPREF1058_RS13580	0.12	+1.0
1,429,897	-		HMPREF1058_RS13580	0.13	-1.0
1,429,955	+		HMPREF1058_RS13580	0.14	+1.9
1,429,989	-		HMPREF1058_RS13580	0.15	+1.8
1,430,075	+		HMPREF1058_RS13580	0.17	+2.0
1,430,076	-		HMPREF1058_RS13580	0.17	+1.1
1,430,076	-		HMPREF1058_RS13580	0.17	+3.7
1,430,079	-		HMPREF1058_RS13580	0.17	+2.4
1,430,286	-		HMPREF1058_RS13580	0.21	+2.2
1,430,286	-		HMPREF1058_RS13580	0.21	+3.0
1,430,436	+		HMPREF1058_RS13580	0.25	+1.9
1,430,437	-		HMPREF1058_RS13580	0.25	-0.2
1,430,468	+		HMPREF1058_RS13580	0.26	+3.7
1,430,468	+		HMPREF1058_RS13580	0.26	+2.6
1,430,519	-		HMPREF1058_RS13580	0.27	+2.5
1,430,622	-		HMPREF1058_RS13580	0.29	+0.6
1,430,681	+		HMPREF1058_RS13580	0.30	+1.9
1,430,681	+		HMPREF1058_RS13580	0.30	+0.1
1,430,681	+		HMPREF1058_RS13580	0.30	+3.5
1,430,682	-		HMPREF1058_RS13580	0.30	+1.5
1,430,697	-		HMPREF1058_RS13580	0.31	+2.2
1,430,762	-		HMPREF1058_RS13580	0.32	+2.4
1,430,774	+		HMPREF1058_RS13580	0.32	+2.1
1,430,775	-		HMPREF1058_RS13580	0.33	+2.9
1,430,803	-		HMPREF1058_RS13580	0.33	+3.3
1,430,837	-		HMPREF1058_RS13580	0.34	+3.1
1,430,837	-		HMPREF1058_RS13580	0.34	+1.9
1,430,910	+		HMPREF1058_RS13580	0.36	+1.1
1,430,972	+		HMPREF1058_RS13580	0.37	+1.8
1,430,972	+		HMPREF1058_RS13580	0.37	+2.8
1,430,972	+		HMPREF1058_RS13580	0.37	-1.9
1,430,972	+		HMPREF1058_RS13580	0.37	+2.1
1,430,973	-		HMPREF1058_RS13580	0.37	+2.1
1,430,973	-		HMPREF1058_RS13580	0.37	+3.0
1,430,973	-		HMPREF1058_RS13580	0.37	+0.2
1,430,973	-		HMPREF1058_RS13580	0.37	+1.5
1,430,974	+		HMPREF1058_RS13580	0.37	+3.3
1,430,974	+		HMPREF1058_RS13580	0.37	+2.6
1,430,974	+		HMPREF1058_RS13580	0.37	+2.0
1,430,975	-		HMPREF1058_RS13580	0.37	+0.6
1,430,975	-		HMPREF1058_RS13580	0.37	+1.1
1,430,975	-		HMPREF1058_RS13580	0.37	-0.3
1,430,975	-		HMPREF1058_RS13580	0.37	+1.9
1,430,976	+		HMPREF1058_RS13580	0.37	+0.3
1,431,127	+		HMPREF1058_RS13580	0.41	+3.7
1,431,147	-				+1.4
1,431,151	+		HMPREF1058_RS13580	0.41	+2.0
1,431,152	-		HMPREF1058_RS13580	0.41	+1.6
1,431,268	-		HMPREF1058_RS13580	0.44	+1.6
1,431,273	-		HMPREF1058_RS13580	0.44	+2.8
1,431,366	+		HMPREF1058_RS13580	0.46	+1.7
1,431,381	+		HMPREF1058_RS13580	0.46	+0.3
1,431,400	+		HMPREF1058_RS13580	0.47	+0.1
1,431,404	+		HMPREF1058_RS13580	0.47	+3.9
1,431,414	-		HMPREF1058_RS13580	0.47	+0.7
1,431,508	-		HMPREF1058_RS13580	0.49	+2.2
1,431,508	-		HMPREF1058_RS13580	0.49	+0.4
1,431,664	+		HMPREF1058_RS13580	0.53	+1.6
1,431,775	-		HMPREF1058_RS13580	0.55	+2.8
1,431,821	-		HMPREF1058_RS13580	0.56	+2.1
1,431,898	-		HMPREF1058_RS13580	0.58	+3.3
1,431,899	+		HMPREF1058_RS13580	0.58	+1.6
1,431,899	+		HMPREF1058_RS13580	0.58	+0.7
1,431,899	+		HMPREF1058_RS13580	0.58	+0.4
1,431,900	-		HMPREF1058_RS13580	0.58	+2.9
1,431,900	-		HMPREF1058_RS13580	0.58	+1.8
1,431,900	-		HMPREF1058_RS13580	0.58	+0.6
1,431,900	-		HMPREF1058_RS13580	0.58	+1.8
1,431,969	-		HMPREF1058_RS13580	0.60	+2.7
1,431,980	+		HMPREF1058_RS13580	0.60	+2.9
1,431,980	+		HMPREF1058_RS13580	0.60	+3.2
1,431,981	-		HMPREF1058_RS13580	0.60	+1.8
1,431,991	+		HMPREF1058_RS13580	0.60	+1.6
1,432,017	-		HMPREF1058_RS13580	0.61	-0.4
1,432,091	+		HMPREF1058_RS13580	0.62	+2.2
1,432,092	-		HMPREF1058_RS13580	0.62	+2.5
1,432,092	-		HMPREF1058_RS13580	0.62	+2.1
1,432,105	+		HMPREF1058_RS13580	0.63	+2.9
1,432,105	+		HMPREF1058_RS13580	0.63	+1.9
1,432,110	-		HMPREF1058_RS13580	0.63	+2.2
1,432,175	+		HMPREF1058_RS13580	0.64	+1.3
1,432,175	+		HMPREF1058_RS13580	0.64	+3.3
1,432,176	-		HMPREF1058_RS13580	0.64	+0.9
1,432,176	-		HMPREF1058_RS13580	0.64	+1.4
1,432,266	+		HMPREF1058_RS13580	0.66	+2.0
1,432,406	-		HMPREF1058_RS13580	0.70	-0.3
1,432,406	-		HMPREF1058_RS13580	0.70	+0.6
1,432,430	+		HMPREF1058_RS13580	0.70	-3.3
1,432,472	+		HMPREF1058_RS13580	0.71	+2.0
1,432,481	+		HMPREF1058_RS13580	0.71	+0.0
1,432,482	-		HMPREF1058_RS13580	0.71	+2.3
1,432,482	-		HMPREF1058_RS13580	0.71	+0.4
1,432,485	+		HMPREF1058_RS13580	0.71	+3.9
1,432,524	+		HMPREF1058_RS13580	0.72	+1.8
1,432,525	-		HMPREF1058_RS13580	0.72	+1.4
1,432,530	-		HMPREF1058_RS13580	0.72	+0.1
1,432,567	+		HMPREF1058_RS13580	0.73	+0.8
1,432,567	+		HMPREF1058_RS13580	0.73	+4.1
1,432,568	-		HMPREF1058_RS13580	0.73	+1.4
1,432,568	-		HMPREF1058_RS13580	0.73	-2.2
1,432,851	-		HMPREF1058_RS13580	0.80	+2.5
1,432,856	-		HMPREF1058_RS13580	0.80	+2.1
1,432,856	-		HMPREF1058_RS13580	0.80	+0.2
1,432,886	-		HMPREF1058_RS13580	0.80	+2.5
1,432,886	-		HMPREF1058_RS13580	0.80	+2.2
1,432,886	-		HMPREF1058_RS13580	0.80	-1.1
1,432,890	+		HMPREF1058_RS13580	0.81	+1.8
1,432,890	+		HMPREF1058_RS13580	0.81	+1.5
1,432,915	-		HMPREF1058_RS13580	0.81	+1.6
1,433,072	-		HMPREF1058_RS13580	0.85	+2.5
1,433,192	-		HMPREF1058_RS13580	0.87	+2.9
1,433,247	-		HMPREF1058_RS13580	0.89	+3.1
1,433,247	-		HMPREF1058_RS13580	0.89	+4.2
1,433,251	+		HMPREF1058_RS13580	0.89	+1.3
1,433,252	-		HMPREF1058_RS13580	0.89	+2.2
1,433,268	-		HMPREF1058_RS13580	0.89	+1.9
1,433,354	+				+3.1
1,433,447	-				+2.3
1,433,463	-				-1.7
1,433,464	+				+2.0
1,433,470	+				+3.7
1,433,471	-				-0.9
1,433,479	-				+0.8
1,433,510	+				-1.2
1,433,520	-				-0.2
1,433,538	-				+1.5
1,433,585	+				+0.2
1,433,586	-				+2.7
1,433,596	-				+4.5
1,433,616	+				+0.9
1,433,681	+				+0.9
1,433,718	-				+1.2
1,433,721	+				-0.2
1,433,761	+				+3.7
1,433,761	+				-0.3
1,433,762	-				-2.2
1,433,764	-				-2.0
1,433,764	-				-0.3
1,433,764	-				-1.2
1,433,794	+				+2.0
1,433,794	+				+2.3
1,433,794	+				+1.3
1,433,802	+				+2.2
1,433,914	+				+1.1
1,433,941	-				+1.0
1,433,964	-				-0.9
1,434,023	-				+1.6
1,434,028	+				-0.2
1,434,028	+				+0.7
1,434,166	+		HMPREF1058_RS13575	0.13	+1.0
1,434,167	-		HMPREF1058_RS13575	0.13	+0.3
1,434,167	-		HMPREF1058_RS13575	0.13	+2.0
1,434,190	+		HMPREF1058_RS13575	0.15	+1.6
1,434,191	-		HMPREF1058_RS13575	0.15	-2.0
1,434,231	+		HMPREF1058_RS13575	0.17	+0.4
1,434,265	+		HMPREF1058_RS13575	0.19	-0.0
1,434,404	+		HMPREF1058_RS13575	0.27	+0.6
1,434,405	-		HMPREF1058_RS13575	0.27	+0.6
1,434,405	-		HMPREF1058_RS13575	0.27	+1.4
1,434,406	+		HMPREF1058_RS13575	0.27	+0.8
1,434,407	-		HMPREF1058_RS13575	0.27	+3.3
1,434,408	+		HMPREF1058_RS13575	0.27	+1.2
1,434,409	-		HMPREF1058_RS13575	0.27	+0.4
1,434,409	-		HMPREF1058_RS13575	0.27	+0.1
1,434,444	+		HMPREF1058_RS13575	0.29	+0.8
1,434,588	+		HMPREF1058_RS13575	0.38	-2.7
1,434,588	+		HMPREF1058_RS13575	0.38	-0.2
1,434,589	-				-1.2
1,434,589	-		HMPREF1058_RS13575	0.38	+0.2
1,434,589	-		HMPREF1058_RS13575	0.38	-1.2
1,434,592	+		HMPREF1058_RS13575	0.38	+0.8
1,434,593	-		HMPREF1058_RS13575	0.38	+2.9
1,434,617	-		HMPREF1058_RS13575	0.39	+0.6
1,434,646	+		HMPREF1058_RS13575	0.41	+0.6
1,434,654	-		HMPREF1058_RS13575	0.41	+1.0
1,434,701	-		HMPREF1058_RS13575	0.44	-2.5
1,434,704	-		HMPREF1058_RS13575	0.44	+2.8
1,434,736	+		HMPREF1058_RS13575	0.46	-1.5
1,434,737	-		HMPREF1058_RS13575	0.46	-1.0
1,434,738	+		HMPREF1058_RS13575	0.46	+0.3