Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13540

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
1,449,382	+		HMPREF1058_RS13545	0.57	+1.9
1,449,398	-		HMPREF1058_RS13545	0.58	+0.0
1,449,497	+		HMPREF1058_RS13545	0.63	+1.0
1,449,520	-		HMPREF1058_RS13545	0.64	+1.7
1,449,601	-		HMPREF1058_RS13545	0.67	+1.4
1,449,601	-		HMPREF1058_RS13545	0.67	+1.6
1,449,601	-		HMPREF1058_RS13545	0.67	+0.6
1,449,657	-		HMPREF1058_RS13545	0.70	+6.2
1,449,682	+		HMPREF1058_RS13545	0.71	+2.7
1,449,794	-		HMPREF1058_RS13545	0.76	+0.2
1,449,819	+		HMPREF1058_RS13545	0.77	-0.2
1,449,924	+		HMPREF1058_RS13545	0.82	+3.9
1,449,925	-		HMPREF1058_RS13545	0.82	-0.7
1,449,967	+		HMPREF1058_RS13545	0.84	-1.0
1,449,976	+		HMPREF1058_RS13545	0.85	+3.5
1,449,994	+				+2.4
1,450,043	+		HMPREF1058_RS13545	0.88	+0.6
1,450,044	-		HMPREF1058_RS13545	0.88	+0.4
1,450,044	-		HMPREF1058_RS13545	0.88	+2.1
1,450,057	-		HMPREF1058_RS13545	0.88	+2.7
1,450,057	-		HMPREF1058_RS13545	0.88	+3.1
1,450,161	+				+1.1
1,450,162	-				+1.1
1,450,162	-				+2.8
1,450,274	+				+1.8
1,450,274	+				+1.8
1,450,275	-				+3.3
1,450,295	+				+1.2
1,450,365	+				+1.3
1,450,371	+				+0.2
1,450,372	-				+0.2
1,450,385	+				+2.5
1,450,502	+				-2.2
1,450,503	-				+0.6
1,450,504	+				+1.1
1,450,505	-				+0.7
1,450,507	-				-0.2
1,450,510	+				+2.4
1,450,523	+				+0.7
1,450,523	+				+1.4
1,450,554	+				+0.8
1,450,554	+				+1.1
1,450,557	-				+2.6
1,450,613	-				+0.9
1,450,615	+				+2.8
1,450,617	+				+0.7
1,450,646	+				-0.7
1,450,646	+				+1.9
1,450,647	-				+1.4
1,450,647	-				-0.0
1,450,651	-				+0.7
1,450,722	-		HMPREF1058_RS13540	0.12	+3.6
1,450,755	+		HMPREF1058_RS13540	0.13	+2.9
1,450,813	-		HMPREF1058_RS13540	0.14	+3.0
1,450,813	-		HMPREF1058_RS13540	0.14	+2.0
1,450,813	-		HMPREF1058_RS13540	0.14	+0.2
1,450,813	-		HMPREF1058_RS13540	0.14	+2.6
1,450,813	-		HMPREF1058_RS13540	0.14	+0.5
1,450,897	-		HMPREF1058_RS13540	0.17	+0.2
1,450,956	+		HMPREF1058_RS13540	0.19	+0.1
1,451,029	-		HMPREF1058_RS13540	0.21	-0.8
1,451,029	-		HMPREF1058_RS13540	0.21	-0.1
1,451,034	-		HMPREF1058_RS13540	0.21	+0.8
1,451,034	-		HMPREF1058_RS13540	0.21	-1.0
1,451,037	+		HMPREF1058_RS13540	0.21	+1.5
1,451,037	+		HMPREF1058_RS13540	0.21	+3.5
1,451,038	-		HMPREF1058_RS13540	0.21	+3.0
1,451,043	+		HMPREF1058_RS13540	0.22	+2.1
1,451,083	-		HMPREF1058_RS13540	0.23	-0.2
1,451,113	+		HMPREF1058_RS13540	0.24	+3.4
1,451,156	-		HMPREF1058_RS13540	0.25	+5.1
1,451,181	-		HMPREF1058_RS13540	0.26	+1.3
1,451,181	-		HMPREF1058_RS13540	0.26	+2.1
1,451,229	-		HMPREF1058_RS13540	0.27	-0.3
1,451,249	-		HMPREF1058_RS13540	0.28	+2.2
1,451,277	+		HMPREF1058_RS13540	0.29	+2.8
1,451,291	-		HMPREF1058_RS13540	0.29	-2.2
1,451,388	+		HMPREF1058_RS13540	0.32	+2.0
1,451,388	+		HMPREF1058_RS13540	0.32	+2.3
1,451,388	+		HMPREF1058_RS13540	0.32	+1.2
1,451,389	-		HMPREF1058_RS13540	0.32	+0.4
1,451,389	-				+1.4
1,451,389	-		HMPREF1058_RS13540	0.32	+3.0
1,451,460	+		HMPREF1058_RS13540	0.34	+0.5
1,451,588	+		HMPREF1058_RS13540	0.38	+2.1
1,451,589	-		HMPREF1058_RS13540	0.38	+2.3
1,451,589	-		HMPREF1058_RS13540	0.38	+2.5
1,451,589	-		HMPREF1058_RS13540	0.38	+1.0
1,451,592	+		HMPREF1058_RS13540	0.38	+1.0
1,451,593	-		HMPREF1058_RS13540	0.38	-1.0
1,451,593	-		HMPREF1058_RS13540	0.38	+1.9
1,451,596	-		HMPREF1058_RS13540	0.38	+2.1
1,451,784	+		HMPREF1058_RS13540	0.44	+2.2
1,451,804	-		HMPREF1058_RS13540	0.45	+2.3
1,451,823	-		HMPREF1058_RS13540	0.45	+1.0
1,451,840	+		HMPREF1058_RS13540	0.46	+0.8
1,451,841	-		HMPREF1058_RS13540	0.46	+1.8
1,451,841	-		HMPREF1058_RS13540	0.46	+3.4
1,451,872	-		HMPREF1058_RS13540	0.47	+0.9
1,451,924	+		HMPREF1058_RS13540	0.48	+3.8
1,451,925	-		HMPREF1058_RS13540	0.48	-2.5
1,451,928	+		HMPREF1058_RS13540	0.49	+2.5
1,451,938	-		HMPREF1058_RS13540	0.49	+2.0
1,452,093	+		HMPREF1058_RS13540	0.54	+1.0
1,452,133	-		HMPREF1058_RS13540	0.55	+2.2
1,452,133	-		HMPREF1058_RS13540	0.55	+0.4
1,452,138	-		HMPREF1058_RS13540	0.55	+2.2
1,452,138	-		HMPREF1058_RS13540	0.55	+0.2
1,452,142	-		HMPREF1058_RS13540	0.55	+0.2
1,452,191	+		HMPREF1058_RS13540	0.57	+2.4
1,452,191	+		HMPREF1058_RS13540	0.57	+2.9
1,452,192	-		HMPREF1058_RS13540	0.57	+3.0
1,452,285	+		HMPREF1058_RS13540	0.59	+2.4
1,452,352	-		HMPREF1058_RS13540	0.62	+3.5
1,452,357	+		HMPREF1058_RS13540	0.62	+2.7
1,452,433	+		HMPREF1058_RS13540	0.64	+1.3
1,452,456	+		HMPREF1058_RS13540	0.65	+3.2
1,452,457	-		HMPREF1058_RS13540	0.65	+3.2
1,452,552	+		HMPREF1058_RS13540	0.68	-0.2
1,452,578	-		HMPREF1058_RS13540	0.68	-0.0
1,452,585	+		HMPREF1058_RS13540	0.69	+1.8
1,452,602	+		HMPREF1058_RS13540	0.69	+1.3
1,452,672	+		HMPREF1058_RS13540	0.71	+0.6
1,452,673	-		HMPREF1058_RS13540	0.71	+1.3
1,452,687	+		HMPREF1058_RS13540	0.72	-0.8
1,452,687	+		HMPREF1058_RS13540	0.72	-1.9
1,452,688	-		HMPREF1058_RS13540	0.72	+2.7
1,452,722	+		HMPREF1058_RS13540	0.73	+1.1
1,452,731	+		HMPREF1058_RS13540	0.73	+1.1
1,452,769	-				+3.8
1,452,820	+		HMPREF1058_RS13540	0.76	+1.4
1,452,885	+				+1.6
1,452,886	-		HMPREF1058_RS13540	0.78	+2.1
1,452,887	+		HMPREF1058_RS13540	0.78	+2.9
1,452,887	+		HMPREF1058_RS13540	0.78	+2.4
1,452,887	+		HMPREF1058_RS13540	0.78	-0.8
1,452,888	-		HMPREF1058_RS13540	0.78	+1.8
1,452,888	-		HMPREF1058_RS13540	0.78	+3.6
1,452,888	-		HMPREF1058_RS13540	0.78	+0.2
1,452,888	-		HMPREF1058_RS13540	0.78	+1.9
1,452,888	-		HMPREF1058_RS13540	0.78	+3.8
1,452,888	-		HMPREF1058_RS13540	0.78	+0.6
1,452,966	+		HMPREF1058_RS13540	0.80	+3.5
1,452,967	-		HMPREF1058_RS13540	0.80	+0.8
1,453,174	+		HMPREF1058_RS13540	0.87	+1.8
1,453,221	+		HMPREF1058_RS13540	0.88	+1.4
1,453,234	+		HMPREF1058_RS13540	0.88	-1.2
1,453,326	+				+2.1
1,453,326	+				+2.2
1,453,368	-				+2.2
1,453,368	-				+2.2
1,453,368	-				-0.2
1,453,373	-				-0.6
1,453,373	-				+1.0
1,453,376	+				+1.9
1,453,377	-				+1.2
1,453,377	-				+1.9
1,453,446	+				+0.2
1,453,478	-				+1.9
1,453,509	+				+0.8
1,453,627	-				+2.3
1,453,630	+				-0.2
1,453,687	+				+1.6
1,453,688	-				-0.6
1,453,720	+				+3.0
1,453,765	-				-2.0
1,453,830	+				+1.0
1,453,969	+		HMPREF1058_RS13535	0.15	-0.0
1,454,029	+		HMPREF1058_RS13535	0.21	+0.2
1,454,030	-		HMPREF1058_RS13535	0.21	-1.2
1,454,062	+		HMPREF1058_RS13535	0.25	-0.2
1,454,064	+		HMPREF1058_RS13535	0.25	-0.0
1,454,091	-		HMPREF1058_RS13535	0.28	-1.2
1,454,151	+		HMPREF1058_RS13535	0.34	-1.8
1,454,152	-		HMPREF1058_RS13535	0.34	-0.9
1,454,188	-		HMPREF1058_RS13535	0.38	+2.0
1,454,272	-		HMPREF1058_RS13535	0.47	+1.4
1,454,272	-		HMPREF1058_RS13535	0.47	-0.8
1,454,272	-		HMPREF1058_RS13535	0.47	+1.8
1,454,314	-		HMPREF1058_RS13535	0.51	+0.4
1,454,379	-		HMPREF1058_RS13535	0.58	+1.5
1,454,464	+		HMPREF1058_RS13535	0.67	-0.8
1,454,465	-		HMPREF1058_RS13535	0.67	-0.9
1,454,488	+		HMPREF1058_RS13535	0.69	-0.2
1,454,544	-		HMPREF1058_RS13535	0.75	+2.1
1,454,544	-		HMPREF1058_RS13535	0.75	+0.2
1,454,544	-		HMPREF1058_RS13535	0.75	-1.8
1,454,546	-		HMPREF1058_RS13535	0.75	+2.1
1,454,549	-		HMPREF1058_RS13535	0.76	-3.2
1,454,549	-		HMPREF1058_RS13535	0.76	+0.2
1,454,549	-		HMPREF1058_RS13535	0.76	+1.4
1,454,595	-		HMPREF1058_RS13535	0.81	-0.3