Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13160

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
1,575,404	-		HMPREF1058_RS13165	0.73	-1.9
1,575,404	-		HMPREF1058_RS13165	0.73	-1.2
1,575,471	+		HMPREF1058_RS13165	0.75	+1.3
1,575,488	+		HMPREF1058_RS13165	0.75	-0.5
1,575,488	+		HMPREF1058_RS13165	0.75	+0.2
1,575,492	+		HMPREF1058_RS13165	0.75	+4.0
1,575,493	-		HMPREF1058_RS13165	0.76	-0.5
1,575,493	-		HMPREF1058_RS13165	0.76	+0.3
1,575,538	+		HMPREF1058_RS13165	0.77	-0.2
1,575,549	-		HMPREF1058_RS13165	0.77	-0.6
1,575,550	+		HMPREF1058_RS13165	0.77	+0.1
1,575,551	-		HMPREF1058_RS13165	0.77	-0.2
1,575,551	-		HMPREF1058_RS13165	0.77	+2.0
1,575,684	-		HMPREF1058_RS13165	0.82	-3.3
1,575,729	-		HMPREF1058_RS13165	0.83	+0.2
1,575,729	-		HMPREF1058_RS13165	0.83	+1.2
1,575,729	-		HMPREF1058_RS13165	0.83	+2.0
1,575,791	+		HMPREF1058_RS13165	0.85	+1.5
1,575,792	-		HMPREF1058_RS13165	0.85	+0.2
1,575,812	+		HMPREF1058_RS13165	0.86	+0.9
1,575,815	+		HMPREF1058_RS13165	0.86	+1.7
1,575,830	-		HMPREF1058_RS13165	0.86	+1.4
1,575,860	-		HMPREF1058_RS13165	0.87	+1.3
1,575,873	-		HMPREF1058_RS13165	0.88	-1.8
1,575,909	+		HMPREF1058_RS13165	0.89	+2.4
1,575,923	+		HMPREF1058_RS13165	0.89	+2.2
1,575,924	-		HMPREF1058_RS13165	0.89	+1.2
1,575,959	-				-1.3
1,576,012	+				+1.7
1,576,106	+				-0.2
1,576,106	+				-0.2
1,576,193	+				+4.8
1,576,225	+				-0.2
1,576,225	+				+0.6
1,576,225	+				+2.1
1,576,226	-				+2.6
1,576,226	-				-0.5
1,576,230	-				+0.1
1,576,230	-				-0.2
1,576,230	-				-0.1
1,576,406	-				+1.2
1,576,494	-				-1.2
1,576,496	+				+3.2
1,576,497	-				+0.8
1,576,529	+				-2.0
1,576,567	+				-2.2
1,576,587	-				-0.8
1,576,644	-				+1.0
1,576,685	+				+0.6
1,576,685	+				-0.4
1,576,686	-				+2.1
1,576,686	-				+0.2
1,576,713	-				-1.1
1,576,741	-				-1.2
1,576,760	+				-1.2
1,576,767	-				+1.6
1,576,800	-				+0.2
1,576,800	-				+1.1
1,576,803	+		HMPREF1058_RS13160	0.10	+1.7
1,576,811	+		HMPREF1058_RS13160	0.10	+1.5
1,576,812	-		HMPREF1058_RS13160	0.10	+0.6
1,576,814	+		HMPREF1058_RS13160	0.10	-0.6
1,576,815	-		HMPREF1058_RS13160	0.10	+1.5
1,576,815	-		HMPREF1058_RS13160	0.10	+0.0
1,576,823	+		HMPREF1058_RS13160	0.11	+0.8
1,576,824	-		HMPREF1058_RS13160	0.11	-0.2
1,576,845	+		HMPREF1058_RS13160	0.11	-1.8
1,576,845	+		HMPREF1058_RS13160	0.11	+1.4
1,576,959	+		HMPREF1058_RS13160	0.14	-1.2
1,576,959	+		HMPREF1058_RS13160	0.14	+1.0
1,576,960	-		HMPREF1058_RS13160	0.14	+0.1
1,577,037	-		HMPREF1058_RS13160	0.16	+2.0
1,577,112	-		HMPREF1058_RS13160	0.18	-2.5
1,577,192	+		HMPREF1058_RS13160	0.20	-2.5
1,577,194	+		HMPREF1058_RS13160	0.20	-2.5
1,577,230	-		HMPREF1058_RS13160	0.21	+0.4
1,577,239	+		HMPREF1058_RS13160	0.21	+0.5
1,577,240	-		HMPREF1058_RS13160	0.21	+2.7
1,577,264	+		HMPREF1058_RS13160	0.22	+0.3
1,577,264	+		HMPREF1058_RS13160	0.22	+1.3
1,577,264	+		HMPREF1058_RS13160	0.22	-0.2
1,577,265	-		HMPREF1058_RS13160	0.22	-0.6
1,577,267	-		HMPREF1058_RS13160	0.22	+2.1
1,577,330	+		HMPREF1058_RS13160	0.23	-0.3
1,577,330	+		HMPREF1058_RS13160	0.23	+2.4
1,577,331	-		HMPREF1058_RS13160	0.23	-2.2
1,577,468	+		HMPREF1058_RS13160	0.27	-0.4
1,577,469	-		HMPREF1058_RS13160	0.27	+1.1
1,577,469	-		HMPREF1058_RS13160	0.27	+0.5
1,577,471	+		HMPREF1058_RS13160	0.27	+0.7
1,577,471	+		HMPREF1058_RS13160	0.27	+0.9
1,577,471	+		HMPREF1058_RS13160	0.27	+1.5
1,577,502	+		HMPREF1058_RS13160	0.28	+0.3
1,577,503	-		HMPREF1058_RS13160	0.28	-0.0
1,577,514	+		HMPREF1058_RS13160	0.28	+1.2
1,577,515	-		HMPREF1058_RS13160	0.28	+0.8
1,577,533	-		HMPREF1058_RS13160	0.28	+1.9
1,577,547	+		HMPREF1058_RS13160	0.29	+0.2
1,577,622	-		HMPREF1058_RS13160	0.31	-1.6
1,577,622	-		HMPREF1058_RS13160	0.31	-0.7
1,577,807	+		HMPREF1058_RS13160	0.35	+0.7
1,577,807	+		HMPREF1058_RS13160	0.35	-0.2
1,577,820	-		HMPREF1058_RS13160	0.36	+1.0
1,577,820	-		HMPREF1058_RS13160	0.36	-3.6
1,577,820	-		HMPREF1058_RS13160	0.36	-1.2
1,577,820	-		HMPREF1058_RS13160	0.36	+4.9
1,577,850	-		HMPREF1058_RS13160	0.36	+2.8
1,577,988	+		HMPREF1058_RS13160	0.40	+0.2
1,577,989	-		HMPREF1058_RS13160	0.40	+1.6
1,577,990	+		HMPREF1058_RS13160	0.40	+0.4
1,577,991	-		HMPREF1058_RS13160	0.40	+0.2
1,577,997	+		HMPREF1058_RS13160	0.40	-0.3
1,577,997	+		HMPREF1058_RS13160	0.40	+0.1
1,577,998	-		HMPREF1058_RS13160	0.40	+3.0
1,577,998	-		HMPREF1058_RS13160	0.40	-0.2
1,578,054	-		HMPREF1058_RS13160	0.41	+1.7
1,578,054	-		HMPREF1058_RS13160	0.41	+0.9
1,578,054	-		HMPREF1058_RS13160	0.41	-1.2
1,578,054	-		HMPREF1058_RS13160	0.41	+0.1
1,578,054	-		HMPREF1058_RS13160	0.41	+0.6
1,578,057	-		HMPREF1058_RS13160	0.42	+4.1
1,578,122	+		HMPREF1058_RS13160	0.43	-1.5
1,578,130	-		HMPREF1058_RS13160	0.43	+1.4
1,578,132	+				-0.2
1,578,136	+		HMPREF1058_RS13160	0.44	+0.2
1,578,185	+		HMPREF1058_RS13160	0.45	+2.1
1,578,185	+		HMPREF1058_RS13160	0.45	+1.8
1,578,186	-		HMPREF1058_RS13160	0.45	+0.1
1,578,186	-		HMPREF1058_RS13160	0.45	+1.8
1,578,191	-		HMPREF1058_RS13160	0.45	-0.0
1,578,191	-		HMPREF1058_RS13160	0.45	+1.2
1,578,287	+		HMPREF1058_RS13160	0.47	-1.3
1,578,287	+		HMPREF1058_RS13160	0.47	+0.6
1,578,341	-		HMPREF1058_RS13160	0.49	+3.7
1,578,356	+		HMPREF1058_RS13160	0.49	+0.9
1,578,356	+		HMPREF1058_RS13160	0.49	-1.8
1,578,357	-		HMPREF1058_RS13160	0.49	-1.2
1,578,357	-		HMPREF1058_RS13160	0.49	+1.4
1,578,357	-		HMPREF1058_RS13160	0.49	-1.0
1,578,398	+		HMPREF1058_RS13160	0.50	+0.1
1,578,470	+		HMPREF1058_RS13160	0.52	+1.6
1,578,470	+		HMPREF1058_RS13160	0.52	+1.3
1,578,470	+		HMPREF1058_RS13160	0.52	+0.9
1,578,470	+		HMPREF1058_RS13160	0.52	-1.2
1,578,471	-		HMPREF1058_RS13160	0.52	-0.7
1,578,471	-		HMPREF1058_RS13160	0.52	+0.6
1,578,475	-		HMPREF1058_RS13160	0.52	-0.7
1,578,524	+		HMPREF1058_RS13160	0.53	+1.2
1,578,552	-		HMPREF1058_RS13160	0.54	-2.8
1,578,606	+		HMPREF1058_RS13160	0.55	-1.3
1,578,607	-		HMPREF1058_RS13160	0.55	-0.8
1,578,607	-		HMPREF1058_RS13160	0.55	+2.6
1,578,607	-		HMPREF1058_RS13160	0.55	+0.3
1,578,608	+		HMPREF1058_RS13160	0.55	-2.3
1,578,642	+		HMPREF1058_RS13160	0.56	+0.6
1,578,755	-		HMPREF1058_RS13160	0.59	+2.0
1,578,767	+		HMPREF1058_RS13160	0.59	+0.6
1,578,820	-		HMPREF1058_RS13160	0.61	+0.2
1,578,881	+		HMPREF1058_RS13160	0.62	+1.3
1,578,882	-		HMPREF1058_RS13160	0.62	+0.1
1,578,888	+		HMPREF1058_RS13160	0.62	+1.3
1,578,889	-		HMPREF1058_RS13160	0.62	+0.7
1,578,995	-		HMPREF1058_RS13160	0.65	+4.0
1,579,007	+		HMPREF1058_RS13160	0.65	-0.6
1,579,008	-		HMPREF1058_RS13160	0.65	+2.7
1,579,025	-		HMPREF1058_RS13160	0.66	+0.1
1,579,028	+		HMPREF1058_RS13160	0.66	+2.1
1,579,028	+		HMPREF1058_RS13160	0.66	+1.5
1,579,050	-		HMPREF1058_RS13160	0.66	+1.2
1,579,107	-		HMPREF1058_RS13160	0.68	-0.4
1,579,123	+		HMPREF1058_RS13160	0.68	+0.7
1,579,123	+		HMPREF1058_RS13160	0.68	+0.8
1,579,123	+		HMPREF1058_RS13160	0.68	-0.5
1,579,123	+		HMPREF1058_RS13160	0.68	+0.8
1,579,124	-		HMPREF1058_RS13160	0.68	-0.8
1,579,127	+		HMPREF1058_RS13160	0.68	-2.5
1,579,127	+		HMPREF1058_RS13160	0.68	-1.2
1,579,190	+		HMPREF1058_RS13160	0.70	+1.7
1,579,204	+		HMPREF1058_RS13160	0.70	-0.2
1,579,236	-		HMPREF1058_RS13160	0.71	-1.3
1,579,241	-		HMPREF1058_RS13160	0.71	+0.7
1,579,256	+		HMPREF1058_RS13160	0.72	+0.7
1,579,263	+		HMPREF1058_RS13160	0.72	+2.0
1,579,299	+		HMPREF1058_RS13160	0.73	+2.3
1,579,397	+		HMPREF1058_RS13160	0.75	-0.1
1,579,397	+		HMPREF1058_RS13160	0.75	+0.8
1,579,397	+		HMPREF1058_RS13160	0.75	+1.8
1,579,397	+		HMPREF1058_RS13160	0.75	+0.5
1,579,397	+		HMPREF1058_RS13160	0.75	+0.4
1,579,398	-		HMPREF1058_RS13160	0.75	+1.7
1,579,398	-		HMPREF1058_RS13160	0.75	+1.0
1,579,401	+		HMPREF1058_RS13160	0.75	+2.5
1,579,402	-		HMPREF1058_RS13160	0.75	+0.2
1,579,535	+		HMPREF1058_RS13160	0.79	+0.4
1,579,551	-		HMPREF1058_RS13160	0.79	-0.4
1,579,617	-		HMPREF1058_RS13160	0.81	-0.2
1,579,623	-		HMPREF1058_RS13160	0.81	+1.4
1,579,625	+		HMPREF1058_RS13160	0.81	-0.1
1,579,625	+		HMPREF1058_RS13160	0.81	+0.5
1,579,626	-		HMPREF1058_RS13160	0.81	+0.4
1,579,627	+		HMPREF1058_RS13160	0.81	+2.0
1,579,627	+		HMPREF1058_RS13160	0.81	+1.3
1,579,627	+		HMPREF1058_RS13160	0.81	+0.2
1,579,628	-		HMPREF1058_RS13160	0.81	+0.6
1,579,628	-		HMPREF1058_RS13160	0.81	+2.2
1,579,682	+		HMPREF1058_RS13160	0.82	+1.2
1,579,682	+		HMPREF1058_RS13160	0.82	+0.7
1,579,682	+		HMPREF1058_RS13160	0.82	-0.2
1,579,683	-		HMPREF1058_RS13160	0.82	+1.5
1,579,732	+		HMPREF1058_RS13160	0.84	+1.9
1,579,732	+		HMPREF1058_RS13160	0.84	+2.1
1,579,743	-		HMPREF1058_RS13160	0.84	-0.7
1,579,751	+		HMPREF1058_RS13160	0.84	+1.7
1,579,752	-		HMPREF1058_RS13160	0.84	-0.0
1,579,805	+		HMPREF1058_RS13160	0.85	+3.0
1,579,807	+		HMPREF1058_RS13160	0.85	+1.4
1,579,807	+		HMPREF1058_RS13160	0.85	+0.9
1,579,808	+		HMPREF1058_RS13160	0.86	+0.4
1,579,808	-		HMPREF1058_RS13160	0.86	-0.0
1,579,811	+		HMPREF1058_RS13160	0.86	+0.8
1,579,860	-		HMPREF1058_RS13160	0.87	+5.7
1,579,927	+		HMPREF1058_RS13160	0.88	+1.2
1,579,927	+				-0.2
1,579,928	-		HMPREF1058_RS13160	0.89	+0.6
1,579,955	+		HMPREF1058_RS13160	0.89	-1.2
1,579,956	-		HMPREF1058_RS13160	0.89	+2.3
1,580,129	+				+0.7
1,580,130	-				-0.7
1,580,130	-				-0.2
1,580,141	-				+4.8
1,580,152	+				-0.4
1,580,194	-				+0.3
1,580,196	-				+1.6
1,580,199	-				-0.5
1,580,199	-				+1.1
1,580,199	-				+1.2
1,580,209	+				-2.5
1,580,210	-				+0.8
1,580,230	+				+2.1
1,580,231	-				-1.2
1,580,231	-				-2.6
1,580,274	-				-0.4
1,580,282	+				+1.1
1,580,329	+				+0.6
1,580,331	+				-0.2
1,580,380	-				-0.2
1,580,380	-				+2.0
1,580,380	-				-1.1
1,580,397	-				-1.2
1,580,449	+				+1.7
1,580,479	-				-2.3
1,580,525	+				-1.2
1,580,567	+				+2.2
1,580,594	+				-0.7
1,580,629	-				-2.2
1,580,652	-				-4.9
1,580,667	-				-2.5
1,580,682	+				-1.4
1,580,682	+				+0.5
1,580,683	-				-1.2
1,580,687	+				+0.8
1,580,811	-		HMPREF1058_RS13155	0.18	-1.8
1,580,863	-		HMPREF1058_RS13155	0.23	-1.8
1,580,908	-		HMPREF1058_RS13155	0.28	-0.2
1,581,019	+		HMPREF1058_RS13155	0.41	+2.8
1,581,020	-		HMPREF1058_RS13155	0.41	-1.4
1,581,053	+		HMPREF1058_RS13155	0.44	-0.8
1,581,054	-		HMPREF1058_RS13155	0.44	-1.8
1,581,054	-		HMPREF1058_RS13155	0.44	-0.8
1,581,206	+		HMPREF1058_RS13155	0.61	-2.1
1,581,236	-		HMPREF1058_RS13155	0.64	+0.2
1,581,236	-		HMPREF1058_RS13155	0.64	+0.8
1,581,253	-		HMPREF1058_RS13155	0.66	+0.7
1,581,253	-		HMPREF1058_RS13155	0.66	+0.8
1,581,255	-		HMPREF1058_RS13155	0.67	-2.8
1,581,255	-		HMPREF1058_RS13155	0.67	+0.2
1,581,295	+		HMPREF1058_RS13155	0.71	+0.8
1,581,308	+		HMPREF1058_RS13155	0.72	-2.1
1,581,315	-		HMPREF1058_RS13155	0.73	-0.2
1,581,323	+		HMPREF1058_RS13155	0.74	-1.8
1,581,345	-		HMPREF1058_RS13155	0.76	-0.4