Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11490 and HMPREF1058_RS11485 are separated by 119 nucleotides HMPREF1058_RS11485 and HMPREF1058_RS11480 overlap by 4 nucleotides HMPREF1058_RS11480 and HMPREF1058_RS11475 are separated by 0 nucleotides
HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418
_RS11490
HMPREF1058_RS11485: HMPREF1058_RS11485 - ketopantoate reductase family protein, at 368,538 to 369,449
_RS11485
HMPREF1058_RS11480: HMPREF1058_RS11480 - prolipoprotein diacylglyceryl transferase, at 369,446 to 370,267
_RS11480
HMPREF1058_RS11475: HMPREF1058_RS11475 - chloramphenicol acetyltransferase, at 370,268 to 370,924
_RS11475
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 367.623 kb on - strand, within HMPREF1058_RS11490 at 367.801 kb on + strand, within HMPREF1058_RS11490 at 367.802 kb on - strand, within HMPREF1058_RS11490 at 367.859 kb on + strand, within HMPREF1058_RS11490 at 367.930 kb on + strand, within HMPREF1058_RS11490 at 367.931 kb on - strand, within HMPREF1058_RS11490 at 367.934 kb on + strand, within HMPREF1058_RS11490 at 367.975 kb on + strand, within HMPREF1058_RS11490 at 367.976 kb on - strand, within HMPREF1058_RS11490 at 368.071 kb on + strand, within HMPREF1058_RS11490 at 368.288 kb on + strand, within HMPREF1058_RS11490 at 368.314 kb on + strand at 368.372 kb on - strand at 368.378 kb on + strand at 368.414 kb on + strand at 368.414 kb on + strand at 368.416 kb on + strand at 368.417 kb on - strand at 368.534 kb on + strand at 368.534 kb on + strand at 368.535 kb on - strand at 368.687 kb on - strand, within HMPREF1058_RS11485 at 368.708 kb on + strand, within HMPREF1058_RS11485 at 368.709 kb on - strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.711 kb on - strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.893 kb on + strand, within HMPREF1058_RS11485 at 368.969 kb on - strand, within HMPREF1058_RS11485 at 369.040 kb on + strand, within HMPREF1058_RS11485 at 369.041 kb on - strand, within HMPREF1058_RS11485 at 369.245 kb on + strand, within HMPREF1058_RS11485 at 369.445 kb on + strand at 369.445 kb on + strand at 369.567 kb on + strand, within HMPREF1058_RS11480 at 369.569 kb on + strand, within HMPREF1058_RS11480 at 369.570 kb on - strand, within HMPREF1058_RS11480 at 369.677 kb on + strand, within HMPREF1058_RS11480 at 369.678 kb on - strand, within HMPREF1058_RS11480 at 369.678 kb on - strand, within HMPREF1058_RS11480 at 369.708 kb on + strand, within HMPREF1058_RS11480 at 369.818 kb on + strand, within HMPREF1058_RS11480 at 369.852 kb on + strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.863 kb on - strand, within HMPREF1058_RS11480 at 369.864 kb on + strand, within HMPREF1058_RS11480 at 369.865 kb on - strand, within HMPREF1058_RS11480 at 369.927 kb on + strand, within HMPREF1058_RS11480 at 369.931 kb on - strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.934 kb on + strand, within HMPREF1058_RS11480 at 369.979 kb on + strand, within HMPREF1058_RS11480 at 370.078 kb on - strand, within HMPREF1058_RS11480 at 370.178 kb on - strand, within HMPREF1058_RS11480 at 370.241 kb on + strand at 370.277 kb on - strand at 370.278 kb on + strand at 370.281 kb on + strand at 370.282 kb on - strand at 370.282 kb on - strand at 370.286 kb on - strand at 370.424 kb on + strand, within HMPREF1058_RS11475 at 370.431 kb on - strand, within HMPREF1058_RS11475
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 367,623 - HMPREF1058_RS11490 0.28 -2.6 367,801 + HMPREF1058_RS11490 0.44 -2.6 367,802 - HMPREF1058_RS11490 0.44 -4.6 367,859 + HMPREF1058_RS11490 0.49 -1.3 367,930 + HMPREF1058_RS11490 0.56 -1.3 367,931 - HMPREF1058_RS11490 0.56 -2.6 367,934 + HMPREF1058_RS11490 0.56 -4.1 367,975 + HMPREF1058_RS11490 0.60 -2.9 367,976 - HMPREF1058_RS11490 0.60 -0.3 368,071 + HMPREF1058_RS11490 0.68 -1.3 368,288 + HMPREF1058_RS11490 0.88 -2.6 368,314 + -1.9 368,372 - -3.4 368,378 + -2.6 368,414 + +0.7 368,414 + -0.2 368,416 + -0.6 368,417 - -0.5 368,534 + +0.2 368,534 + -0.3 368,535 - -0.5 368,687 - HMPREF1058_RS11485 0.16 -1.6 368,708 + HMPREF1058_RS11485 0.19 +0.5 368,709 - HMPREF1058_RS11485 0.19 +0.6 368,710 + HMPREF1058_RS11485 0.19 +1.5 368,710 + HMPREF1058_RS11485 0.19 +2.4 368,711 - HMPREF1058_RS11485 0.19 +0.8 368,733 + HMPREF1058_RS11485 0.21 -0.3 368,733 + HMPREF1058_RS11485 0.21 -3.3 368,893 + HMPREF1058_RS11485 0.39 +4.4 368,969 - HMPREF1058_RS11485 0.47 +0.2 369,040 + HMPREF1058_RS11485 0.55 -0.1 369,041 - HMPREF1058_RS11485 0.55 -1.3 369,245 + HMPREF1058_RS11485 0.78 -1.2 369,445 + +0.6 369,445 + +1.3 369,567 + HMPREF1058_RS11480 0.15 -2.6 369,569 + HMPREF1058_RS11480 0.15 -0.4 369,570 - HMPREF1058_RS11480 0.15 -1.9 369,677 + HMPREF1058_RS11480 0.28 +1.8 369,678 - HMPREF1058_RS11480 0.28 +0.9 369,678 - HMPREF1058_RS11480 0.28 -0.6 369,708 + HMPREF1058_RS11480 0.32 +0.3 369,818 + HMPREF1058_RS11480 0.45 -1.9 369,852 + HMPREF1058_RS11480 0.49 -0.9 369,863 - HMPREF1058_RS11480 0.51 +1.0 369,863 - HMPREF1058_RS11480 0.51 -1.3 369,863 - HMPREF1058_RS11480 0.51 -0.3 369,864 + HMPREF1058_RS11480 0.51 -0.3 369,865 - HMPREF1058_RS11480 0.51 -0.1 369,927 + HMPREF1058_RS11480 0.59 -0.7 369,931 - HMPREF1058_RS11480 0.59 -1.5 369,934 + HMPREF1058_RS11480 0.59 +1.7 369,934 + HMPREF1058_RS11480 0.59 -1.0 369,934 + HMPREF1058_RS11480 0.59 +4.6 369,979 + HMPREF1058_RS11480 0.65 +0.9 370,078 - HMPREF1058_RS11480 0.77 -0.4 370,178 - HMPREF1058_RS11480 0.89 +0.7 370,241 + +1.7 370,277 - -1.6 370,278 + -0.4 370,281 + -1.3 370,282 - +0.5 370,282 - -0.8 370,286 - -1.3 370,424 + HMPREF1058_RS11475 0.24 -1.4 370,431 - HMPREF1058_RS11475 0.25 -0.9
Or see this region's nucleotide sequence