Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11435 and HMPREF1058_RS11430 are separated by 118 nucleotides HMPREF1058_RS11430 and HMPREF1058_RS11425 are separated by 37 nucleotides
HMPREF1058_RS11435: HMPREF1058_RS11435 - DNA mismatch repair protein MutS, at 380,111 to 382,723
_RS11435
HMPREF1058_RS11430: HMPREF1058_RS11430 - flavin reductase, at 382,842 to 383,348
_RS11430
HMPREF1058_RS11425: HMPREF1058_RS11425 - transposase, at 383,386 to 384,378
_RS11425
HMPREF1058_RS11420: HMPREF1058_RS11420 - hypothetical protein, at 384,344 to 384,730
_RS11420
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 381.886 kb on + strand, within HMPREF1058_RS11435 at 381.887 kb on - strand, within HMPREF1058_RS11435 at 381.887 kb on - strand, within HMPREF1058_RS11435 at 381.887 kb on - strand, within HMPREF1058_RS11435 at 381.890 kb on + strand, within HMPREF1058_RS11435 at 381.891 kb on - strand, within HMPREF1058_RS11435 at 381.919 kb on + strand, within HMPREF1058_RS11435 at 381.965 kb on + strand, within HMPREF1058_RS11435 at 381.966 kb on - strand, within HMPREF1058_RS11435 at 381.966 kb on - strand, within HMPREF1058_RS11435 at 381.968 kb on - strand, within HMPREF1058_RS11435 at 382.002 kb on + strand, within HMPREF1058_RS11435 at 382.013 kb on - strand, within HMPREF1058_RS11435 at 382.026 kb on - strand, within HMPREF1058_RS11435 at 382.026 kb on - strand, within HMPREF1058_RS11435 at 382.030 kb on + strand, within HMPREF1058_RS11435 at 382.030 kb on + strand, within HMPREF1058_RS11435 at 382.040 kb on - strand, within HMPREF1058_RS11435 at 382.239 kb on - strand, within HMPREF1058_RS11435 at 382.241 kb on - strand, within HMPREF1058_RS11435 at 382.242 kb on + strand, within HMPREF1058_RS11435 at 382.342 kb on + strand, within HMPREF1058_RS11435 at 382.497 kb on + strand at 382.536 kb on - strand at 382.623 kb on + strand at 382.648 kb on + strand at 382.774 kb on - strand at 382.795 kb on + strand at 382.812 kb on - strand at 382.826 kb on + strand at 382.853 kb on - strand at 382.976 kb on - strand, within HMPREF1058_RS11430 at 383.022 kb on - strand, within HMPREF1058_RS11430 at 383.034 kb on - strand, within HMPREF1058_RS11430 at 383.089 kb on + strand, within HMPREF1058_RS11430 at 383.093 kb on + strand, within HMPREF1058_RS11430 at 383.094 kb on - strand, within HMPREF1058_RS11430 at 383.094 kb on - strand, within HMPREF1058_RS11430 at 383.130 kb on - strand, within HMPREF1058_RS11430 at 383.135 kb on - strand, within HMPREF1058_RS11430 at 383.313 kb on + strand at 383.314 kb on - strand at 383.339 kb on - strand at 383.351 kb on - strand at 383.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 381,886 + HMPREF1058_RS11435 0.68 -1.3 381,887 - HMPREF1058_RS11435 0.68 +1.6 381,887 - HMPREF1058_RS11435 0.68 +1.2 381,887 - HMPREF1058_RS11435 0.68 +0.7 381,890 + HMPREF1058_RS11435 0.68 -0.3 381,891 - HMPREF1058_RS11435 0.68 -1.3 381,919 + HMPREF1058_RS11435 0.69 -1.2 381,965 + HMPREF1058_RS11435 0.71 -1.6 381,966 - HMPREF1058_RS11435 0.71 -0.9 381,966 - HMPREF1058_RS11435 0.71 +0.6 381,968 - HMPREF1058_RS11435 0.71 -0.8 382,002 + HMPREF1058_RS11435 0.72 -1.7 382,013 - HMPREF1058_RS11435 0.73 +3.0 382,026 - HMPREF1058_RS11435 0.73 -0.7 382,026 - HMPREF1058_RS11435 0.73 -1.3 382,030 + HMPREF1058_RS11435 0.73 -4.7 382,030 + HMPREF1058_RS11435 0.73 -2.8 382,040 - HMPREF1058_RS11435 0.74 -0.8 382,239 - HMPREF1058_RS11435 0.81 +0.4 382,241 - HMPREF1058_RS11435 0.82 +0.4 382,242 + HMPREF1058_RS11435 0.82 -0.7 382,342 + HMPREF1058_RS11435 0.85 -1.8 382,497 + -0.3 382,536 - +1.4 382,623 + -2.3 382,648 + -1.3 382,774 - -0.3 382,795 + +1.1 382,812 - -2.1 382,826 + -0.9 382,853 - +0.9 382,976 - HMPREF1058_RS11430 0.26 -0.3 383,022 - HMPREF1058_RS11430 0.36 +0.8 383,034 - HMPREF1058_RS11430 0.38 +1.7 383,089 + HMPREF1058_RS11430 0.49 +3.9 383,093 + HMPREF1058_RS11430 0.50 +0.8 383,094 - HMPREF1058_RS11430 0.50 -0.6 383,094 - HMPREF1058_RS11430 0.50 +1.7 383,130 - HMPREF1058_RS11430 0.57 -0.4 383,135 - HMPREF1058_RS11430 0.58 +1.9 383,313 + +2.1 383,314 - -3.1 383,339 - -1.0 383,351 - +0.2 383,405 - +0.5
Or see this region's nucleotide sequence