Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10765 and HMPREF1058_RS10760 are separated by 144 nucleotides HMPREF1058_RS10760 and HMPREF1058_RS10755 are separated by 18 nucleotides
HMPREF1058_RS10765: HMPREF1058_RS10765 - ribonuclease III, at 568,552 to 569,478
_RS10765
HMPREF1058_RS10760: HMPREF1058_RS10760 - sulfatase, at 569,623 to 571,176
_RS10760
HMPREF1058_RS10755: HMPREF1058_RS10755 - alpha-galactosidase, at 571,195 to 573,270
_RS10755
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 568.640 kb on - strand at 568.653 kb on + strand, within HMPREF1058_RS10765 at 568.661 kb on - strand, within HMPREF1058_RS10765 at 568.869 kb on + strand, within HMPREF1058_RS10765 at 568.872 kb on - strand, within HMPREF1058_RS10765 at 568.901 kb on - strand, within HMPREF1058_RS10765 at 568.901 kb on - strand, within HMPREF1058_RS10765 at 568.924 kb on - strand, within HMPREF1058_RS10765 at 568.930 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.932 kb on + strand, within HMPREF1058_RS10765 at 568.933 kb on - strand, within HMPREF1058_RS10765 at 568.968 kb on + strand, within HMPREF1058_RS10765 at 568.972 kb on + strand, within HMPREF1058_RS10765 at 568.973 kb on - strand, within HMPREF1058_RS10765 at 569.033 kb on - strand at 569.034 kb on + strand, within HMPREF1058_RS10765 at 569.035 kb on - strand, within HMPREF1058_RS10765 at 569.036 kb on + strand, within HMPREF1058_RS10765 at 569.036 kb on + strand, within HMPREF1058_RS10765 at 569.158 kb on - strand, within HMPREF1058_RS10765 at 569.194 kb on - strand, within HMPREF1058_RS10765 at 569.359 kb on - strand, within HMPREF1058_RS10765 at 569.436 kb on - strand at 569.509 kb on + strand at 569.514 kb on - strand at 569.514 kb on - strand at 569.550 kb on + strand at 569.550 kb on + strand at 569.554 kb on + strand at 569.555 kb on - strand at 569.557 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.609 kb on + strand at 569.610 kb on - strand at 569.708 kb on - strand at 569.729 kb on - strand at 569.752 kb on + strand at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.782 kb on + strand, within HMPREF1058_RS10760 at 569.783 kb on - strand, within HMPREF1058_RS10760 at 569.889 kb on + strand, within HMPREF1058_RS10760 at 569.890 kb on - strand, within HMPREF1058_RS10760 at 569.890 kb on - strand, within HMPREF1058_RS10760 at 569.973 kb on + strand, within HMPREF1058_RS10760 at 570.016 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.021 kb on + strand, within HMPREF1058_RS10760 at 570.022 kb on - strand, within HMPREF1058_RS10760 at 570.042 kb on + strand, within HMPREF1058_RS10760 at 570.047 kb on + strand, within HMPREF1058_RS10760 at 570.076 kb on + strand, within HMPREF1058_RS10760 at 570.123 kb on - strand, within HMPREF1058_RS10760 at 570.125 kb on - strand, within HMPREF1058_RS10760 at 570.125 kb on - strand, within HMPREF1058_RS10760 at 570.235 kb on - strand, within HMPREF1058_RS10760 at 570.288 kb on + strand, within HMPREF1058_RS10760 at 570.304 kb on + strand, within HMPREF1058_RS10760 at 570.305 kb on - strand, within HMPREF1058_RS10760 at 570.314 kb on + strand, within HMPREF1058_RS10760 at 570.398 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.408 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.410 kb on + strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.411 kb on - strand, within HMPREF1058_RS10760 at 570.412 kb on + strand, within HMPREF1058_RS10760 at 570.412 kb on + strand, within HMPREF1058_RS10760 at 570.413 kb on - strand, within HMPREF1058_RS10760 at 570.413 kb on - strand, within HMPREF1058_RS10760 at 570.417 kb on - strand, within HMPREF1058_RS10760 at 570.492 kb on + strand, within HMPREF1058_RS10760 at 570.585 kb on - strand, within HMPREF1058_RS10760 at 570.616 kb on + strand, within HMPREF1058_RS10760 at 570.642 kb on + strand, within HMPREF1058_RS10760 at 570.751 kb on - strand, within HMPREF1058_RS10760 at 570.786 kb on - strand, within HMPREF1058_RS10760 at 570.805 kb on + strand, within HMPREF1058_RS10760 at 570.806 kb on - strand, within HMPREF1058_RS10760 at 570.806 kb on - strand, within HMPREF1058_RS10760 at 570.918 kb on + strand, within HMPREF1058_RS10760 at 570.929 kb on + strand, within HMPREF1058_RS10760 at 570.996 kb on + strand, within HMPREF1058_RS10760 at 570.997 kb on - strand, within HMPREF1058_RS10760 at 571.063 kb on + strand at 571.071 kb on + strand at 571.072 kb on - strand at 571.157 kb on - strand at 571.162 kb on + strand at 571.171 kb on - strand at 571.196 kb on + strand at 571.237 kb on - strand at 571.237 kb on - strand at 571.290 kb on + strand at 571.291 kb on - strand at 571.294 kb on + strand at 571.295 kb on - strand at 571.297 kb on + strand at 571.369 kb on + strand at 571.370 kb on - strand at 571.370 kb on - strand at 571.446 kb on + strand, within HMPREF1058_RS10755 at 571.460 kb on - strand, within HMPREF1058_RS10755 at 571.550 kb on + strand, within HMPREF1058_RS10755 at 571.704 kb on + strand, within HMPREF1058_RS10755 at 571.876 kb on - strand, within HMPREF1058_RS10755 at 571.876 kb on - strand, within HMPREF1058_RS10755 at 571.907 kb on - strand, within HMPREF1058_RS10755 at 571.920 kb on + strand, within HMPREF1058_RS10755 at 571.921 kb on - strand, within HMPREF1058_RS10755 at 571.922 kb on + strand, within HMPREF1058_RS10755 at 571.934 kb on - strand, within HMPREF1058_RS10755 at 571.971 kb on - strand, within HMPREF1058_RS10755 at 572.001 kb on - strand, within HMPREF1058_RS10755 at 572.007 kb on + strand, within HMPREF1058_RS10755 at 572.008 kb on - strand, within HMPREF1058_RS10755 at 572.008 kb on - strand, within HMPREF1058_RS10755 at 572.037 kb on + strand, within HMPREF1058_RS10755 at 572.056 kb on - strand, within HMPREF1058_RS10755 at 572.092 kb on - strand, within HMPREF1058_RS10755 at 572.146 kb on - strand, within HMPREF1058_RS10755
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 568,640 - -2.6 568,653 + HMPREF1058_RS10765 0.11 +0.6 568,661 - HMPREF1058_RS10765 0.12 +1.3 568,869 + HMPREF1058_RS10765 0.34 -0.3 568,872 - HMPREF1058_RS10765 0.35 +0.0 568,901 - HMPREF1058_RS10765 0.38 +0.2 568,901 - HMPREF1058_RS10765 0.38 -0.2 568,924 - HMPREF1058_RS10765 0.40 +1.1 568,930 + HMPREF1058_RS10765 0.41 +0.3 568,932 + HMPREF1058_RS10765 0.41 -0.5 568,932 + HMPREF1058_RS10765 0.41 -2.0 568,932 + HMPREF1058_RS10765 0.41 -0.4 568,932 + HMPREF1058_RS10765 0.41 +1.6 568,932 + HMPREF1058_RS10765 0.41 -2.1 568,933 - HMPREF1058_RS10765 0.41 -0.6 568,968 + HMPREF1058_RS10765 0.45 -0.2 568,972 + HMPREF1058_RS10765 0.45 +0.9 568,973 - HMPREF1058_RS10765 0.45 -2.8 569,033 - -0.2 569,034 + HMPREF1058_RS10765 0.52 +1.2 569,035 - HMPREF1058_RS10765 0.52 -0.7 569,036 + HMPREF1058_RS10765 0.52 +0.4 569,036 + HMPREF1058_RS10765 0.52 -0.1 569,158 - HMPREF1058_RS10765 0.65 -2.2 569,194 - HMPREF1058_RS10765 0.69 -0.4 569,359 - HMPREF1058_RS10765 0.87 -0.8 569,436 - +0.6 569,509 + -1.0 569,514 - +1.5 569,514 - -0.7 569,550 + +0.9 569,550 + -3.2 569,554 + +4.1 569,555 - -0.8 569,557 + +0.8 569,609 + +1.5 569,609 + +0.9 569,609 + -1.3 569,609 + +1.1 569,610 - -0.2 569,708 - +3.3 569,729 - -0.4 569,752 + +0.2 569,782 + HMPREF1058_RS10760 0.10 -0.8 569,782 + HMPREF1058_RS10760 0.10 -2.6 569,782 + HMPREF1058_RS10760 0.10 -0.1 569,783 - HMPREF1058_RS10760 0.10 -0.3 569,889 + HMPREF1058_RS10760 0.17 -1.8 569,890 - HMPREF1058_RS10760 0.17 -0.8 569,890 - HMPREF1058_RS10760 0.17 +0.2 569,973 + HMPREF1058_RS10760 0.23 -2.0 570,016 + HMPREF1058_RS10760 0.25 -0.2 570,021 + HMPREF1058_RS10760 0.26 -0.2 570,021 + HMPREF1058_RS10760 0.26 +0.3 570,021 + HMPREF1058_RS10760 0.26 +0.4 570,022 - HMPREF1058_RS10760 0.26 -1.9 570,042 + HMPREF1058_RS10760 0.27 -3.9 570,047 + HMPREF1058_RS10760 0.27 -0.2 570,076 + HMPREF1058_RS10760 0.29 -0.2 570,123 - HMPREF1058_RS10760 0.32 -2.3 570,125 - HMPREF1058_RS10760 0.32 -1.8 570,125 - HMPREF1058_RS10760 0.32 +0.3 570,235 - HMPREF1058_RS10760 0.39 -0.9 570,288 + HMPREF1058_RS10760 0.43 -0.2 570,304 + HMPREF1058_RS10760 0.44 -3.2 570,305 - HMPREF1058_RS10760 0.44 -2.2 570,314 + HMPREF1058_RS10760 0.44 -0.0 570,398 + HMPREF1058_RS10760 0.50 -2.0 570,408 + HMPREF1058_RS10760 0.51 -0.2 570,408 + HMPREF1058_RS10760 0.51 -1.5 570,408 + HMPREF1058_RS10760 0.51 -2.1 570,408 + HMPREF1058_RS10760 0.51 -2.0 570,410 + HMPREF1058_RS10760 0.51 -6.7 570,410 + HMPREF1058_RS10760 0.51 -2.0 570,410 + HMPREF1058_RS10760 0.51 -1.9 570,410 + HMPREF1058_RS10760 0.51 -1.7 570,411 - HMPREF1058_RS10760 0.51 -2.4 570,411 - HMPREF1058_RS10760 0.51 -0.3 570,411 - HMPREF1058_RS10760 0.51 -0.1 570,412 + HMPREF1058_RS10760 0.51 -1.6 570,412 + HMPREF1058_RS10760 0.51 -1.3 570,413 - HMPREF1058_RS10760 0.51 -0.0 570,413 - HMPREF1058_RS10760 0.51 -0.6 570,417 - HMPREF1058_RS10760 0.51 +5.8 570,492 + HMPREF1058_RS10760 0.56 -2.1 570,585 - HMPREF1058_RS10760 0.62 -0.1 570,616 + HMPREF1058_RS10760 0.64 -2.2 570,642 + HMPREF1058_RS10760 0.66 -1.7 570,751 - HMPREF1058_RS10760 0.73 -1.3 570,786 - HMPREF1058_RS10760 0.75 +0.2 570,805 + HMPREF1058_RS10760 0.76 -2.7 570,806 - HMPREF1058_RS10760 0.76 -2.5 570,806 - HMPREF1058_RS10760 0.76 -1.0 570,918 + HMPREF1058_RS10760 0.83 -3.9 570,929 + HMPREF1058_RS10760 0.84 -0.8 570,996 + HMPREF1058_RS10760 0.88 +0.0 570,997 - HMPREF1058_RS10760 0.88 -0.6 571,063 + -1.6 571,071 + -1.2 571,072 - -0.5 571,157 - -2.5 571,162 + -1.4 571,171 - -1.5 571,196 + -1.5 571,237 - -2.6 571,237 - +0.6 571,290 + -2.2 571,291 - +0.4 571,294 + -1.4 571,295 - -0.1 571,297 + -0.2 571,369 + -1.6 571,370 - -0.7 571,370 - -1.0 571,446 + HMPREF1058_RS10755 0.12 -0.4 571,460 - HMPREF1058_RS10755 0.13 +0.8 571,550 + HMPREF1058_RS10755 0.17 -1.2 571,704 + HMPREF1058_RS10755 0.25 -0.4 571,876 - HMPREF1058_RS10755 0.33 -1.3 571,876 - HMPREF1058_RS10755 0.33 -1.8 571,907 - HMPREF1058_RS10755 0.34 -0.2 571,920 + HMPREF1058_RS10755 0.35 -2.7 571,921 - HMPREF1058_RS10755 0.35 -0.8 571,922 + HMPREF1058_RS10755 0.35 -0.1 571,934 - HMPREF1058_RS10755 0.36 -1.1 571,971 - HMPREF1058_RS10755 0.37 +3.6 572,001 - HMPREF1058_RS10755 0.39 -0.4 572,007 + HMPREF1058_RS10755 0.39 -0.2 572,008 - HMPREF1058_RS10755 0.39 -2.2 572,008 - HMPREF1058_RS10755 0.39 -0.6 572,037 + HMPREF1058_RS10755 0.41 -1.9 572,056 - HMPREF1058_RS10755 0.41 -3.4 572,092 - HMPREF1058_RS10755 0.43 +0.1 572,146 - HMPREF1058_RS10755 0.46 +1.4
Or see this region's nucleotide sequence