Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10595 and HMPREF1058_RS10590 are separated by 13 nucleotides HMPREF1058_RS10590 and HMPREF1058_RS10585 overlap by 1 nucleotides HMPREF1058_RS10585 and HMPREF1058_RS10580 are separated by 21 nucleotides
HMPREF1058_RS10595: HMPREF1058_RS10595 - methyltransferase domain-containing protein, at 619,291 to 620,361
_RS10595
HMPREF1058_RS10590: HMPREF1058_RS10590 - acyltransferase, at 620,375 to 621,259
_RS10590
HMPREF1058_RS10585: HMPREF1058_RS10585 - acyl carrier protein, at 621,259 to 621,510
_RS10585
HMPREF1058_RS10580: HMPREF1058_RS10580 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 621,532 to 622,761
_RS10580
Position (kb) 621
622 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 620.293 kb on + strand at 620.293 kb on + strand at 620.328 kb on + strand at 620.328 kb on + strand at 620.329 kb on - strand at 620.343 kb on + strand at 620.362 kb on - strand at 620.377 kb on - strand at 620.446 kb on + strand at 620.449 kb on - strand at 620.509 kb on + strand, within HMPREF1058_RS10590 at 620.509 kb on + strand, within HMPREF1058_RS10590 at 620.510 kb on - strand, within HMPREF1058_RS10590 at 620.556 kb on + strand, within HMPREF1058_RS10590 at 620.646 kb on - strand at 620.688 kb on + strand, within HMPREF1058_RS10590 at 620.689 kb on - strand, within HMPREF1058_RS10590 at 620.723 kb on + strand, within HMPREF1058_RS10590 at 620.723 kb on + strand, within HMPREF1058_RS10590 at 620.905 kb on + strand, within HMPREF1058_RS10590 at 620.905 kb on + strand, within HMPREF1058_RS10590 at 620.909 kb on + strand, within HMPREF1058_RS10590 at 620.910 kb on - strand, within HMPREF1058_RS10590 at 620.930 kb on + strand, within HMPREF1058_RS10590 at 621.034 kb on - strand, within HMPREF1058_RS10590 at 621.132 kb on - strand, within HMPREF1058_RS10590 at 621.138 kb on + strand, within HMPREF1058_RS10590 at 621.138 kb on + strand, within HMPREF1058_RS10590 at 621.203 kb on - strand at 621.276 kb on + strand at 621.277 kb on - strand at 621.370 kb on + strand at 621.373 kb on + strand, within HMPREF1058_RS10585 at 621.374 kb on - strand, within HMPREF1058_RS10585 at 621.374 kb on - strand, within HMPREF1058_RS10585 at 621.445 kb on + strand, within HMPREF1058_RS10585 at 621.516 kb on + strand at 621.519 kb on - strand at 621.725 kb on + strand, within HMPREF1058_RS10580 at 621.725 kb on + strand, within HMPREF1058_RS10580 at 621.792 kb on - strand, within HMPREF1058_RS10580 at 621.876 kb on + strand, within HMPREF1058_RS10580 at 621.877 kb on - strand, within HMPREF1058_RS10580 at 621.926 kb on - strand, within HMPREF1058_RS10580 at 621.963 kb on + strand, within HMPREF1058_RS10580 at 621.964 kb on - strand, within HMPREF1058_RS10580 at 621.994 kb on + strand, within HMPREF1058_RS10580 at 621.995 kb on - strand, within HMPREF1058_RS10580 at 622.014 kb on + strand, within HMPREF1058_RS10580 at 622.014 kb on + strand, within HMPREF1058_RS10580 at 622.014 kb on + strand, within HMPREF1058_RS10580 at 622.179 kb on - strand, within HMPREF1058_RS10580 at 622.186 kb on + strand, within HMPREF1058_RS10580 at 622.187 kb on - strand, within HMPREF1058_RS10580 at 622.233 kb on + strand, within HMPREF1058_RS10580 at 622.366 kb on - strand, within HMPREF1058_RS10580 at 622.459 kb on + strand, within HMPREF1058_RS10580 at 622.459 kb on + strand, within HMPREF1058_RS10580 at 622.460 kb on - strand, within HMPREF1058_RS10580
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 620,293 + +4.9 620,293 + +2.7 620,328 + +1.1 620,328 + +1.4 620,329 - +1.0 620,343 + +0.4 620,362 - +0.9 620,377 - -0.6 620,446 + -1.3 620,449 - +1.3 620,509 + HMPREF1058_RS10590 0.15 +0.7 620,509 + HMPREF1058_RS10590 0.15 +4.6 620,510 - HMPREF1058_RS10590 0.15 +1.8 620,556 + HMPREF1058_RS10590 0.20 +2.6 620,646 - -1.3 620,688 + HMPREF1058_RS10590 0.35 +1.2 620,689 - HMPREF1058_RS10590 0.35 -1.0 620,723 + HMPREF1058_RS10590 0.39 +0.7 620,723 + HMPREF1058_RS10590 0.39 -2.0 620,905 + HMPREF1058_RS10590 0.60 -0.3 620,905 + HMPREF1058_RS10590 0.60 +1.4 620,909 + HMPREF1058_RS10590 0.60 +1.2 620,910 - HMPREF1058_RS10590 0.60 +1.1 620,930 + HMPREF1058_RS10590 0.63 -0.0 621,034 - HMPREF1058_RS10590 0.74 +1.0 621,132 - HMPREF1058_RS10590 0.86 +0.9 621,138 + HMPREF1058_RS10590 0.86 -0.6 621,138 + HMPREF1058_RS10590 0.86 -0.7 621,203 - +1.5 621,276 + +0.4 621,277 - +4.7 621,370 + -1.3 621,373 + HMPREF1058_RS10585 0.45 -0.1 621,374 - HMPREF1058_RS10585 0.46 +0.3 621,374 - HMPREF1058_RS10585 0.46 +0.5 621,445 + HMPREF1058_RS10585 0.74 +2.0 621,516 + -0.3 621,519 - +2.0 621,725 + HMPREF1058_RS10580 0.16 -1.8 621,725 + HMPREF1058_RS10580 0.16 +0.7 621,792 - HMPREF1058_RS10580 0.21 +0.4 621,876 + HMPREF1058_RS10580 0.28 +1.0 621,877 - HMPREF1058_RS10580 0.28 -0.0 621,926 - HMPREF1058_RS10580 0.32 -0.8 621,963 + HMPREF1058_RS10580 0.35 +0.4 621,964 - HMPREF1058_RS10580 0.35 -1.0 621,994 + HMPREF1058_RS10580 0.38 -0.2 621,995 - HMPREF1058_RS10580 0.38 -0.7 622,014 + HMPREF1058_RS10580 0.39 +0.5 622,014 + HMPREF1058_RS10580 0.39 +1.0 622,014 + HMPREF1058_RS10580 0.39 -0.3 622,179 - HMPREF1058_RS10580 0.53 +1.3 622,186 + HMPREF1058_RS10580 0.53 -1.0 622,187 - HMPREF1058_RS10580 0.53 -0.1 622,233 + HMPREF1058_RS10580 0.57 -0.3 622,366 - HMPREF1058_RS10580 0.68 -0.8 622,459 + HMPREF1058_RS10580 0.75 +0.6 622,459 + HMPREF1058_RS10580 0.75 -0.1 622,460 - HMPREF1058_RS10580 0.75 -0.8
Or see this region's nucleotide sequence