Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10145 and HMPREF1058_RS10140 are separated by 119 nucleotides HMPREF1058_RS10140 and HMPREF1058_RS10135 overlap by 11 nucleotides HMPREF1058_RS10135 and HMPREF1058_RS10130 are separated by 2 nucleotides HMPREF1058_RS10130 and HMPREF1058_RS0119665 overlap by 1 nucleotides
HMPREF1058_RS10145: HMPREF1058_RS10145 - hypothetical protein, at 715,471 to 716,052
_RS10145
HMPREF1058_RS10140: HMPREF1058_RS10140 - hypothetical protein, at 716,172 to 716,624
_RS10140
HMPREF1058_RS10135: HMPREF1058_RS10135 - hypothetical protein, at 716,614 to 716,979
_RS10135
HMPREF1058_RS10130: HMPREF1058_RS10130 - MBL fold metallo-hydrolase, at 716,982 to 717,716
_RS10130
HMPREF1058_RS0119665: HMPREF1058_RS0119665 - recombinase RecT, at 717,716 to 718,705
_RS0119665
Position (kb) 716
717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 715.998 kb on + strand at 716.057 kb on + strand at 716.177 kb on + strand at 716.219 kb on + strand, within HMPREF1058_RS10140 at 716.348 kb on + strand, within HMPREF1058_RS10140 at 716.400 kb on + strand, within HMPREF1058_RS10140 at 716.465 kb on + strand, within HMPREF1058_RS10140 at 716.526 kb on + strand, within HMPREF1058_RS10140 at 716.626 kb on + strand at 716.632 kb on + strand at 716.732 kb on + strand, within HMPREF1058_RS10135 at 716.781 kb on + strand, within HMPREF1058_RS10135 at 716.784 kb on + strand, within HMPREF1058_RS10135 at 716.823 kb on + strand, within HMPREF1058_RS10135 at 716.831 kb on + strand, within HMPREF1058_RS10135 at 716.974 kb on + strand at 717.254 kb on + strand, within HMPREF1058_RS10130 at 717.326 kb on + strand, within HMPREF1058_RS10130 at 717.444 kb on + strand, within HMPREF1058_RS10130 at 717.495 kb on + strand, within HMPREF1058_RS10130 at 717.524 kb on + strand, within HMPREF1058_RS10130 at 717.663 kb on + strand at 717.787 kb on + strand at 717.829 kb on + strand, within HMPREF1058_RS0119665 at 717.914 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.564 kb on + strand, within HMPREF1058_RS0119665 at 718.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 715,998 + +0.3 716,057 + -1.0 716,177 + +4.6 716,219 + HMPREF1058_RS10140 0.10 -1.2 716,348 + HMPREF1058_RS10140 0.39 +1.7 716,400 + HMPREF1058_RS10140 0.50 +0.4 716,465 + HMPREF1058_RS10140 0.65 +1.7 716,526 + HMPREF1058_RS10140 0.78 -0.4 716,626 + -2.3 716,632 + -0.1 716,732 + HMPREF1058_RS10135 0.32 +0.0 716,781 + HMPREF1058_RS10135 0.46 +4.4 716,784 + HMPREF1058_RS10135 0.46 +0.1 716,823 + HMPREF1058_RS10135 0.57 -0.3 716,831 + HMPREF1058_RS10135 0.59 +0.2 716,974 + -2.3 717,254 + HMPREF1058_RS10130 0.37 -1.6 717,326 + HMPREF1058_RS10130 0.47 -1.0 717,444 + HMPREF1058_RS10130 0.63 -0.4 717,495 + HMPREF1058_RS10130 0.70 -3.2 717,524 + HMPREF1058_RS10130 0.74 +0.2 717,663 + -0.3 717,787 + -0.3 717,829 + HMPREF1058_RS0119665 0.11 -0.2 717,914 + HMPREF1058_RS0119665 0.20 -3.2 718,499 + HMPREF1058_RS0119665 0.79 +1.3 718,499 + HMPREF1058_RS0119665 0.79 +0.1 718,499 + HMPREF1058_RS0119665 0.79 -0.1 718,526 + HMPREF1058_RS0119665 0.82 +0.7 718,526 + HMPREF1058_RS0119665 0.82 +1.1 718,564 + HMPREF1058_RS0119665 0.86 +1.8 718,669 + +0.7
Or see this region's nucleotide sequence