Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10125 and HMPREF1058_RS10120 overlap by 4 nucleotides HMPREF1058_RS10120 and HMPREF1058_RS10115 are separated by 254 nucleotides HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides
HMPREF1058_RS10125: HMPREF1058_RS10125 - AAA family ATPase, at 718,717 to 720,711
_RS10125
HMPREF1058_RS10120: HMPREF1058_RS10120 - hypothetical protein, at 720,708 to 720,995
_RS10120
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
Position (kb) 720
721 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 719.806 kb on + strand, within HMPREF1058_RS10125 at 720.100 kb on + strand, within HMPREF1058_RS10125 at 720.219 kb on + strand, within HMPREF1058_RS10125 at 720.254 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.420 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.516 kb on + strand at 720.700 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.780 kb on + strand, within HMPREF1058_RS10120 at 720.812 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.984 kb on + strand at 720.996 kb on + strand at 721.078 kb on + strand at 721.084 kb on + strand at 721.084 kb on + strand at 721.095 kb on + strand at 721.095 kb on + strand at 721.211 kb on + strand at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 719,806 + HMPREF1058_RS10125 0.55 -1.2 720,100 + HMPREF1058_RS10125 0.69 -1.8 720,219 + HMPREF1058_RS10125 0.75 +1.6 720,254 + HMPREF1058_RS10125 0.77 -1.3 720,317 + HMPREF1058_RS10125 0.80 -0.9 720,317 + HMPREF1058_RS10125 0.80 -0.4 720,420 + HMPREF1058_RS10125 0.85 -3.9 720,484 + HMPREF1058_RS10125 0.89 +0.3 720,484 + HMPREF1058_RS10125 0.89 -1.1 720,516 + +0.2 720,700 + -1.5 720,724 + -1.1 720,724 + -0.1 720,724 + -0.3 720,724 + +0.6 720,724 + -0.1 720,780 + HMPREF1058_RS10120 0.25 -1.5 720,812 + HMPREF1058_RS10120 0.36 -0.1 720,871 + HMPREF1058_RS10120 0.57 +1.3 720,871 + HMPREF1058_RS10120 0.57 -3.0 720,984 + -2.2 720,996 + -0.9 721,078 + +1.1 721,084 + +3.2 721,084 + +0.1 721,095 + -3.7 721,095 + +0.5 721,211 + +1.2 721,429 + HMPREF1058_RS10115 0.32 +1.0 721,557 + HMPREF1058_RS10115 0.56 +2.0 721,559 + HMPREF1058_RS10115 0.56 -1.3 721,656 + HMPREF1058_RS10115 0.74 +0.4 721,656 + HMPREF1058_RS10115 0.74 -0.9 721,723 + HMPREF1058_RS10115 0.86 -0.7 721,759 + -3.9 721,979 + HMPREF1058_RS10110 0.72 +1.1
Or see this region's nucleotide sequence