Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09920 and HMPREF1058_RS09915 are separated by 46 nucleotides HMPREF1058_RS09915 and HMPREF1058_RS09910 overlap by 32 nucleotides HMPREF1058_RS09910 and HMPREF1058_RS09905 are separated by 6 nucleotides
HMPREF1058_RS09920: HMPREF1058_RS09920 - conjugative transposon protein TraN, at 759,766 to 760,752
_RS09920
HMPREF1058_RS09915: HMPREF1058_RS09915 - conjugative transposon protein TraM, at 760,799 to 762,175
_RS09915
HMPREF1058_RS09910: HMPREF1058_RS09910 - DUF3989 domain-containing protein, at 762,144 to 762,464
_RS09910
HMPREF1058_RS09905: HMPREF1058_RS09905 - conjugative transposon protein TraK, at 762,471 to 763,094
_RS09905
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 760.040 kb on + strand, within HMPREF1058_RS09920 at 760.041 kb on - strand, within HMPREF1058_RS09920 at 760.091 kb on + strand, within HMPREF1058_RS09920 at 760.113 kb on - strand, within HMPREF1058_RS09920 at 760.248 kb on - strand, within HMPREF1058_RS09920 at 760.341 kb on - strand, within HMPREF1058_RS09920 at 760.381 kb on + strand, within HMPREF1058_RS09920 at 760.741 kb on + strand at 760.753 kb on + strand at 761.030 kb on + strand, within HMPREF1058_RS09915 at 761.055 kb on + strand, within HMPREF1058_RS09915 at 761.253 kb on + strand, within HMPREF1058_RS09915 at 761.253 kb on + strand, within HMPREF1058_RS09915 at 761.981 kb on + strand, within HMPREF1058_RS09915 at 762.178 kb on - strand, within HMPREF1058_RS09910 at 762.189 kb on + strand, within HMPREF1058_RS09910 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.757 kb on + strand, within HMPREF1058_RS09905 at 762.763 kb on + strand, within HMPREF1058_RS09905 at 763.129 kb on + strand at 763.162 kb on + strand at 763.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 760,040 + HMPREF1058_RS09920 0.28 -1.6 760,041 - HMPREF1058_RS09920 0.28 -0.8 760,091 + HMPREF1058_RS09920 0.33 +1.0 760,113 - HMPREF1058_RS09920 0.35 +0.3 760,248 - HMPREF1058_RS09920 0.49 +0.7 760,341 - HMPREF1058_RS09920 0.58 -1.3 760,381 + HMPREF1058_RS09920 0.62 -1.5 760,741 + +2.8 760,753 + +0.2 761,030 + HMPREF1058_RS09915 0.17 +1.9 761,055 + HMPREF1058_RS09915 0.19 +1.3 761,253 + HMPREF1058_RS09915 0.33 -1.7 761,253 + HMPREF1058_RS09915 0.33 +0.6 761,981 + HMPREF1058_RS09915 0.86 -0.3 762,178 - HMPREF1058_RS09910 0.11 -1.9 762,189 + HMPREF1058_RS09910 0.14 -0.1 762,301 + HMPREF1058_RS09910 0.49 +4.1 762,301 + HMPREF1058_RS09910 0.49 -0.2 762,757 + HMPREF1058_RS09905 0.46 -0.4 762,763 + HMPREF1058_RS09905 0.47 -1.2 763,129 + +2.3 763,162 + -0.1 763,162 + +0.5
Or see this region's nucleotide sequence