Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09900 and HMPREF1058_RS09895 are separated by 3 nucleotides HMPREF1058_RS09895 and HMPREF1058_RS09890 are separated by 23 nucleotides HMPREF1058_RS09890 and HMPREF1058_RS09885 are separated by 49 nucleotides
HMPREF1058_RS09900: HMPREF1058_RS09900 - conjugative transposon protein TraJ, at 763,299 to 764,303
_RS09900
HMPREF1058_RS09895: HMPREF1058_RS09895 - DUF4141 domain-containing protein, at 764,307 to 764,936
_RS09895
HMPREF1058_RS09890: HMPREF1058_RS09890 - DUF3876 domain-containing protein, at 764,960 to 765,340
_RS09890
HMPREF1058_RS09885: HMPREF1058_RS09885 - TraG family conjugative transposon ATPase, at 765,390 to 767,894
_RS09885
Position (kb) 764
765 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 763.627 kb on + strand, within HMPREF1058_RS09900 at 763.828 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 764.084 kb on + strand, within HMPREF1058_RS09900 at 764.303 kb on + strand at 764.383 kb on + strand, within HMPREF1058_RS09895 at 764.410 kb on + strand, within HMPREF1058_RS09895 at 764.638 kb on + strand, within HMPREF1058_RS09895 at 764.638 kb on + strand, within HMPREF1058_RS09895 at 764.731 kb on + strand, within HMPREF1058_RS09895 at 765.003 kb on + strand, within HMPREF1058_RS09890 at 765.391 kb on + strand at 765.538 kb on + strand at 765.824 kb on + strand, within HMPREF1058_RS09885 at 765.845 kb on + strand, within HMPREF1058_RS09885
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 763,627 + HMPREF1058_RS09900 0.33 -1.3 763,828 + HMPREF1058_RS09900 0.53 -0.4 763,846 + HMPREF1058_RS09900 0.54 +1.3 763,846 + HMPREF1058_RS09900 0.54 +0.5 764,084 + HMPREF1058_RS09900 0.78 -2.5 764,303 + +1.9 764,383 + HMPREF1058_RS09895 0.12 -1.4 764,410 + HMPREF1058_RS09895 0.16 +1.3 764,638 + HMPREF1058_RS09895 0.53 +0.9 764,638 + HMPREF1058_RS09895 0.53 +2.7 764,731 + HMPREF1058_RS09895 0.67 -2.3 765,003 + HMPREF1058_RS09890 0.11 +1.7 765,391 + +4.2 765,538 + -1.5 765,824 + HMPREF1058_RS09885 0.17 +0.8 765,845 + HMPREF1058_RS09885 0.18 -0.0
Or see this region's nucleotide sequence