Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09070 and HMPREF1058_RS09065 are separated by 50 nucleotides HMPREF1058_RS09065 and HMPREF1058_RS09060 are separated by 17 nucleotides HMPREF1058_RS09060 and HMPREF1058_RS09055 are separated by 114 nucleotides
HMPREF1058_RS09070: HMPREF1058_RS09070 - alpha-galactosidase, at 951,730 to 953,337
_RS09070
HMPREF1058_RS09065: HMPREF1058_RS09065 - helix-turn-helix transcriptional regulator, at 953,388 to 954,158
_RS09065
HMPREF1058_RS09060: HMPREF1058_RS09060 - hypothetical protein, at 954,176 to 954,760
_RS09060
HMPREF1058_RS09055: HMPREF1058_RS09055 - MATE family efflux transporter, at 954,875 to 956,167
_RS09055
Position (kb) 954
955 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 953.219 kb on + strand at 953.267 kb on + strand at 953.268 kb on - strand at 953.268 kb on - strand at 953.304 kb on - strand at 953.335 kb on + strand at 953.344 kb on - strand at 953.457 kb on + strand at 953.477 kb on + strand, within HMPREF1058_RS09065 at 953.536 kb on + strand, within HMPREF1058_RS09065 at 953.536 kb on + strand, within HMPREF1058_RS09065 at 953.537 kb on - strand, within HMPREF1058_RS09065 at 953.537 kb on - strand, within HMPREF1058_RS09065 at 953.538 kb on + strand, within HMPREF1058_RS09065 at 953.539 kb on - strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.540 kb on + strand, within HMPREF1058_RS09065 at 953.541 kb on - strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.556 kb on + strand, within HMPREF1058_RS09065 at 953.606 kb on - strand, within HMPREF1058_RS09065 at 953.631 kb on + strand, within HMPREF1058_RS09065 at 953.645 kb on + strand, within HMPREF1058_RS09065 at 953.706 kb on + strand, within HMPREF1058_RS09065 at 953.708 kb on + strand, within HMPREF1058_RS09065 at 953.741 kb on + strand, within HMPREF1058_RS09065 at 953.742 kb on - strand, within HMPREF1058_RS09065 at 953.761 kb on + strand, within HMPREF1058_RS09065 at 953.782 kb on - strand, within HMPREF1058_RS09065 at 953.789 kb on + strand, within HMPREF1058_RS09065 at 953.855 kb on + strand, within HMPREF1058_RS09065 at 953.855 kb on + strand, within HMPREF1058_RS09065 at 953.856 kb on - strand, within HMPREF1058_RS09065 at 953.901 kb on - strand, within HMPREF1058_RS09065 at 953.995 kb on + strand, within HMPREF1058_RS09065 at 953.996 kb on - strand, within HMPREF1058_RS09065 at 954.048 kb on - strand, within HMPREF1058_RS09065 at 954.093 kb on - strand at 954.151 kb on + strand at 954.192 kb on - strand at 954.194 kb on + strand at 954.205 kb on + strand at 954.206 kb on - strand at 954.239 kb on - strand, within HMPREF1058_RS09060 at 954.321 kb on - strand, within HMPREF1058_RS09060 at 954.519 kb on - strand, within HMPREF1058_RS09060 at 954.599 kb on - strand, within HMPREF1058_RS09060 at 954.616 kb on + strand, within HMPREF1058_RS09060 at 954.650 kb on + strand, within HMPREF1058_RS09060 at 954.651 kb on - strand, within HMPREF1058_RS09060 at 954.683 kb on + strand, within HMPREF1058_RS09060 at 954.754 kb on + strand at 954.760 kb on + strand at 954.760 kb on + strand at 954.761 kb on - strand at 954.774 kb on + strand at 954.822 kb on + strand at 954.823 kb on - strand at 954.826 kb on + strand at 954.827 kb on - strand at 954.835 kb on - strand at 954.876 kb on + strand at 954.949 kb on + strand at 954.949 kb on + strand at 954.949 kb on + strand at 954.950 kb on - strand at 954.951 kb on + strand at 954.971 kb on + strand at 954.990 kb on + strand at 954.996 kb on + strand at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.007 kb on + strand, within HMPREF1058_RS09055 at 955.009 kb on - strand, within HMPREF1058_RS09055 at 955.033 kb on + strand, within HMPREF1058_RS09055 at 955.077 kb on + strand, within HMPREF1058_RS09055 at 955.078 kb on - strand, within HMPREF1058_RS09055 at 955.078 kb on - strand, within HMPREF1058_RS09055 at 955.103 kb on - strand, within HMPREF1058_RS09055 at 955.103 kb on - strand, within HMPREF1058_RS09055 at 955.104 kb on + strand, within HMPREF1058_RS09055 at 955.104 kb on + strand, within HMPREF1058_RS09055 at 955.105 kb on - strand, within HMPREF1058_RS09055 at 955.168 kb on - strand, within HMPREF1058_RS09055 at 955.168 kb on - strand, within HMPREF1058_RS09055 at 955.326 kb on - strand, within HMPREF1058_RS09055 at 955.442 kb on - strand, within HMPREF1058_RS09055 at 955.447 kb on + strand, within HMPREF1058_RS09055 at 955.479 kb on + strand, within HMPREF1058_RS09055 at 955.479 kb on + strand, within HMPREF1058_RS09055 at 955.592 kb on + strand, within HMPREF1058_RS09055 at 955.636 kb on + strand, within HMPREF1058_RS09055 at 955.670 kb on - strand, within HMPREF1058_RS09055 at 955.673 kb on + strand, within HMPREF1058_RS09055 at 955.682 kb on + strand, within HMPREF1058_RS09055 at 955.683 kb on - strand, within HMPREF1058_RS09055
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 953,219 + +1.5 953,267 + -1.5 953,268 - +2.4 953,268 - -1.9 953,304 - -0.2 953,335 + -0.9 953,344 - +0.1 953,457 + +0.8 953,477 + HMPREF1058_RS09065 0.12 +0.3 953,536 + HMPREF1058_RS09065 0.19 -1.4 953,536 + HMPREF1058_RS09065 0.19 -0.1 953,537 - HMPREF1058_RS09065 0.19 +1.0 953,537 - HMPREF1058_RS09065 0.19 +1.6 953,538 + HMPREF1058_RS09065 0.19 -0.3 953,539 - HMPREF1058_RS09065 0.20 +0.4 953,540 + HMPREF1058_RS09065 0.20 -1.6 953,540 + HMPREF1058_RS09065 0.20 -1.3 953,540 + HMPREF1058_RS09065 0.20 +1.5 953,541 - HMPREF1058_RS09065 0.20 -1.3 953,556 + HMPREF1058_RS09065 0.22 +1.7 953,556 + HMPREF1058_RS09065 0.22 +2.6 953,556 + HMPREF1058_RS09065 0.22 +2.0 953,606 - HMPREF1058_RS09065 0.28 +0.7 953,631 + HMPREF1058_RS09065 0.32 -0.2 953,645 + HMPREF1058_RS09065 0.33 -1.2 953,706 + HMPREF1058_RS09065 0.41 +1.0 953,708 + HMPREF1058_RS09065 0.42 +0.2 953,741 + HMPREF1058_RS09065 0.46 -1.6 953,742 - HMPREF1058_RS09065 0.46 +0.2 953,761 + HMPREF1058_RS09065 0.48 -1.6 953,782 - HMPREF1058_RS09065 0.51 -1.6 953,789 + HMPREF1058_RS09065 0.52 +0.9 953,855 + HMPREF1058_RS09065 0.61 +0.3 953,855 + HMPREF1058_RS09065 0.61 +1.0 953,856 - HMPREF1058_RS09065 0.61 +1.4 953,901 - HMPREF1058_RS09065 0.67 +0.8 953,995 + HMPREF1058_RS09065 0.79 +1.6 953,996 - HMPREF1058_RS09065 0.79 -1.0 954,048 - HMPREF1058_RS09065 0.86 -0.1 954,093 - +0.9 954,151 + -0.7 954,192 - +1.3 954,194 + +0.5 954,205 + -2.3 954,206 - -2.9 954,239 - HMPREF1058_RS09060 0.11 -0.2 954,321 - HMPREF1058_RS09060 0.25 +0.4 954,519 - HMPREF1058_RS09060 0.59 +1.0 954,599 - HMPREF1058_RS09060 0.72 +1.5 954,616 + HMPREF1058_RS09060 0.75 -0.3 954,650 + HMPREF1058_RS09060 0.81 +0.4 954,651 - HMPREF1058_RS09060 0.81 +0.4 954,683 + HMPREF1058_RS09060 0.87 +4.4 954,754 + -1.7 954,760 + +3.0 954,760 + -1.3 954,761 - -0.9 954,774 + -1.9 954,822 + -4.1 954,823 - -0.1 954,826 + +0.3 954,827 - -1.9 954,835 - +1.4 954,876 + +0.9 954,949 + -1.0 954,949 + +0.8 954,949 + -0.0 954,950 - +1.4 954,951 + -3.3 954,971 + +0.5 954,990 + +0.5 954,996 + -1.3 955,007 + HMPREF1058_RS09055 0.10 +1.7 955,007 + HMPREF1058_RS09055 0.10 -1.9 955,007 + HMPREF1058_RS09055 0.10 -0.3 955,007 + HMPREF1058_RS09055 0.10 +1.7 955,007 + HMPREF1058_RS09055 0.10 +0.6 955,009 - HMPREF1058_RS09055 0.10 -1.1 955,033 + HMPREF1058_RS09055 0.12 +0.3 955,077 + HMPREF1058_RS09055 0.16 -0.9 955,078 - HMPREF1058_RS09055 0.16 +0.2 955,078 - HMPREF1058_RS09055 0.16 +1.1 955,103 - HMPREF1058_RS09055 0.18 -0.8 955,103 - HMPREF1058_RS09055 0.18 +0.7 955,104 + HMPREF1058_RS09055 0.18 -3.9 955,104 + HMPREF1058_RS09055 0.18 -0.0 955,105 - HMPREF1058_RS09055 0.18 -0.5 955,168 - HMPREF1058_RS09055 0.23 +2.2 955,168 - HMPREF1058_RS09055 0.23 +1.1 955,326 - HMPREF1058_RS09055 0.35 -2.3 955,442 - HMPREF1058_RS09055 0.44 -2.3 955,447 + HMPREF1058_RS09055 0.44 -0.9 955,479 + HMPREF1058_RS09055 0.47 +0.9 955,479 + HMPREF1058_RS09055 0.47 -1.7 955,592 + HMPREF1058_RS09055 0.55 +2.1 955,636 + HMPREF1058_RS09055 0.59 -1.3 955,670 - HMPREF1058_RS09055 0.61 +1.3 955,673 + HMPREF1058_RS09055 0.62 -0.0 955,682 + HMPREF1058_RS09055 0.62 -0.6 955,683 - HMPREF1058_RS09055 0.62 +0.9
Or see this region's nucleotide sequence