Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08700

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
1,063,793	+		HMPREF1058_RS08705	0.45	-3.7
1,063,794	-		HMPREF1058_RS08705	0.45	-1.1
1,063,794	-		HMPREF1058_RS08705	0.45	+0.6
1,063,865	-		HMPREF1058_RS08705	0.51	-1.9
1,063,867	-		HMPREF1058_RS08705	0.51	+4.7
1,063,867	-		HMPREF1058_RS08705	0.51	-3.7
1,063,894	+		HMPREF1058_RS08705	0.53	-2.3
1,063,936	+		HMPREF1058_RS08705	0.57	-1.6
1,063,937	-		HMPREF1058_RS08705	0.57	-0.1
1,063,964	+		HMPREF1058_RS08705	0.59	-0.4
1,063,985	-		HMPREF1058_RS08705	0.61	+1.8
1,063,985	-		HMPREF1058_RS08705	0.61	-0.3
1,064,096	+		HMPREF1058_RS08705	0.71	-0.3
1,064,109	-		HMPREF1058_RS08705	0.72	-0.7
1,064,231	+		HMPREF1058_RS08705	0.83	-1.0
1,064,411	+				+1.0
1,064,476	+				+1.3
1,064,517	+				+0.7
1,064,526	-				-0.9
1,064,530	+				+0.6
1,064,665	-				+0.5
1,064,906	-				-1.3
1,064,969	+				-3.9
1,064,970	-				-4.2
1,065,023	+				-0.3
1,065,130	+		HMPREF1058_RS08700	0.11	+0.1
1,065,130	+		HMPREF1058_RS08700	0.11	-1.9
1,065,130	+		HMPREF1058_RS08700	0.11	-0.4
1,065,224	+		HMPREF1058_RS08700	0.14	-1.3
1,065,333	+		HMPREF1058_RS08700	0.17	-2.1
1,065,448	+		HMPREF1058_RS08700	0.21	-3.1
1,065,478	+		HMPREF1058_RS08700	0.22	-0.3
1,065,542	+		HMPREF1058_RS08700	0.24	-2.6
1,065,578	+		HMPREF1058_RS08700	0.25	-1.0
1,065,602	+		HMPREF1058_RS08700	0.25	-0.3
1,065,663	-		HMPREF1058_RS08700	0.27	-1.5
1,065,666	+		HMPREF1058_RS08700	0.27	-1.3
1,065,669	+		HMPREF1058_RS08700	0.27	-0.9
1,065,669	+		HMPREF1058_RS08700	0.27	-3.7
1,065,737	+		HMPREF1058_RS08700	0.30	-2.4
1,065,798	-		HMPREF1058_RS08700	0.31	-2.2
1,065,816	+		HMPREF1058_RS08700	0.32	-1.0
1,065,851	+		HMPREF1058_RS08700	0.33	-0.6
1,065,852	-		HMPREF1058_RS08700	0.33	-0.2
1,065,865	-		HMPREF1058_RS08700	0.33	-1.4
1,065,872	+		HMPREF1058_RS08700	0.34	-0.3
1,065,902	+		HMPREF1058_RS08700	0.35	-1.0
1,065,902	+		HMPREF1058_RS08700	0.35	+0.7
1,065,909	+		HMPREF1058_RS08700	0.35	-4.2
1,065,910	-		HMPREF1058_RS08700	0.35	-0.3
1,065,910	-		HMPREF1058_RS08700	0.35	-2.7
1,065,929	+		HMPREF1058_RS08700	0.35	-2.3
1,065,929	+		HMPREF1058_RS08700	0.35	-1.3
1,065,930	-		HMPREF1058_RS08700	0.35	-0.7
1,065,957	+		HMPREF1058_RS08700	0.36	-1.6
1,065,963	+		HMPREF1058_RS08700	0.36	-0.3
1,066,050	-		HMPREF1058_RS08700	0.39	-2.2
1,066,104	+		HMPREF1058_RS08700	0.41	+0.3
1,066,104	+		HMPREF1058_RS08700	0.41	-3.5
1,066,104	+		HMPREF1058_RS08700	0.41	-0.5
1,066,105	-		HMPREF1058_RS08700	0.41	-0.3
1,066,105	-		HMPREF1058_RS08700	0.41	-1.1
1,066,121	+		HMPREF1058_RS08700	0.41	-0.3
1,066,122	-		HMPREF1058_RS08700	0.41	-2.3
1,066,122	-		HMPREF1058_RS08700	0.41	+1.0
1,066,278	-		HMPREF1058_RS08700	0.46	-2.1
1,066,299	+		HMPREF1058_RS08700	0.47	-0.8
1,066,374	+		HMPREF1058_RS08700	0.49	-2.5
1,066,375	-		HMPREF1058_RS08700	0.49	-2.3
1,066,375	-		HMPREF1058_RS08700	0.49	-3.4
1,066,397	-		HMPREF1058_RS08700	0.50	-4.0
1,066,397	-		HMPREF1058_RS08700	0.50	-1.9
1,066,397	-		HMPREF1058_RS08700	0.50	-1.5
1,066,419	-		HMPREF1058_RS08700	0.50	-0.3
1,066,419	-		HMPREF1058_RS08700	0.50	-1.3
1,066,494	+		HMPREF1058_RS08700	0.53	-0.7
1,066,550	+		HMPREF1058_RS08700	0.54	-0.8
1,066,551	-		HMPREF1058_RS08700	0.54	-2.6
1,066,584	-		HMPREF1058_RS08700	0.55	+0.0
1,066,589	-		HMPREF1058_RS08700	0.55	-1.3
1,066,589	-		HMPREF1058_RS08700	0.55	-0.3
1,066,665	-		HMPREF1058_RS08700	0.58	+0.2
1,066,668	+		HMPREF1058_RS08700	0.58	-1.3
1,066,669	-		HMPREF1058_RS08700	0.58	-2.3
1,066,692	+		HMPREF1058_RS08700	0.59	-1.5
1,066,710	+		HMPREF1058_RS08700	0.59	-1.6
1,066,909	+		HMPREF1058_RS08700	0.65	-2.6
1,066,934	+		HMPREF1058_RS08700	0.66	+2.0
1,066,934	+		HMPREF1058_RS08700	0.66	-2.9
1,066,935	-		HMPREF1058_RS08700	0.66	-2.6
1,066,996	-		HMPREF1058_RS08700	0.68	-1.9
1,067,115	-		HMPREF1058_RS08700	0.72	-0.4
1,067,160	-		HMPREF1058_RS08700	0.73	-0.7
1,067,331	+		HMPREF1058_RS08700	0.78	+0.9
1,067,335	+		HMPREF1058_RS08700	0.78	-3.1
1,067,358	+		HMPREF1058_RS08700	0.79	-0.8
1,067,358	+		HMPREF1058_RS08700	0.79	-0.7
1,067,359	-		HMPREF1058_RS08700	0.79	-1.3
1,067,409	+		HMPREF1058_RS08700	0.80	-3.3
1,067,411	+		HMPREF1058_RS08700	0.81	-0.3
1,067,499	+		HMPREF1058_RS08700	0.83	+0.6
1,067,499	+		HMPREF1058_RS08700	0.83	-3.3
1,067,500	-		HMPREF1058_RS08700	0.83	-3.4
1,067,546	+		HMPREF1058_RS08700	0.85	-1.0
1,067,649	+		HMPREF1058_RS08700	0.88	-0.9
1,067,649	+		HMPREF1058_RS08700	0.88	-2.3
1,067,651	+		HMPREF1058_RS08700	0.88	-0.4
1,067,651	+		HMPREF1058_RS08700	0.88	-3.9
1,067,652	-		HMPREF1058_RS08700	0.88	-3.3
1,067,661	+		HMPREF1058_RS08700	0.88	+1.1
1,067,670	+		HMPREF1058_RS08700	0.88	-1.3
1,067,688	+		HMPREF1058_RS08700	0.89	-1.9
1,067,689	-		HMPREF1058_RS08700	0.89	+3.9
1,067,690	+		HMPREF1058_RS08700	0.89	-2.2
1,067,691	-		HMPREF1058_RS08700	0.89	+0.4
1,067,691	-		HMPREF1058_RS08700	0.89	-1.1
1,067,763	+				-1.3
1,067,764	-				-2.0
1,067,764	-				-3.1
1,067,793	+				+1.3
1,067,819	-				-3.9
1,067,819	-				-3.6
1,067,862	-				-1.6
1,067,972	+				-1.9
1,067,972	+				-2.6
1,067,972	+				-2.4
1,067,972	+				+0.6
1,067,973	-				-1.1
1,067,977	-				-1.9
1,068,023	+				+2.5
1,068,062	+				-3.4
1,068,086	+				+0.7
1,068,087	-				-1.4
1,068,164	+				-2.5
1,068,219	+				-0.7
1,068,219	+				-1.2
1,068,220	-				+0.7
1,068,220	-				-1.3
1,068,307	-		HMPREF1058_RS08695	0.12	-2.6
1,068,307	-		HMPREF1058_RS08695	0.12	-0.2
1,068,354	-		HMPREF1058_RS08695	0.15	-1.4
1,068,357	+				-0.3
1,068,358	-		HMPREF1058_RS08695	0.15	-3.9
1,068,358	-		HMPREF1058_RS08695	0.15	-1.3
1,068,375	-		HMPREF1058_RS08695	0.16	-2.4
1,068,411	-		HMPREF1058_RS08695	0.18	-2.7
1,068,565	+		HMPREF1058_RS08695	0.25	-1.9
1,068,566	-		HMPREF1058_RS08695	0.25	-0.8
1,068,635	+		HMPREF1058_RS08695	0.29	+1.4
1,068,635	+		HMPREF1058_RS08695	0.29	-1.5
1,068,679	-		HMPREF1058_RS08695	0.31	-2.6
1,068,693	-		HMPREF1058_RS08695	0.32	-1.3
1,068,702	-		HMPREF1058_RS08695	0.32	-1.9
1,068,707	-		HMPREF1058_RS08695	0.32	-0.8
1,068,718	+		HMPREF1058_RS08695	0.33	-0.7
1,068,729	+		HMPREF1058_RS08695	0.34	-1.3
1,068,729	+		HMPREF1058_RS08695	0.34	-2.3
1,068,749	-		HMPREF1058_RS08695	0.35	-1.3
1,068,788	-		HMPREF1058_RS08695	0.37	-0.6
1,068,855	+		HMPREF1058_RS08695	0.40	-1.5
1,068,856	-		HMPREF1058_RS08695	0.40	-1.0
1,068,858	-		HMPREF1058_RS08695	0.40	-1.1
1,068,935	+		HMPREF1058_RS08695	0.44	-2.6
1,068,983	+		HMPREF1058_RS08695	0.46	-1.3
1,068,984	-		HMPREF1058_RS08695	0.46	-1.3
1,069,026	+		HMPREF1058_RS08695	0.48	-1.9
1,069,027	-		HMPREF1058_RS08695	0.49	-0.9