Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07550 and HMPREF1058_RS07545 are separated by 278 nucleotides HMPREF1058_RS07545 and HMPREF1058_RS07540 are separated by 21 nucleotides HMPREF1058_RS07540 and HMPREF1058_RS07535 are separated by 14 nucleotides
HMPREF1058_RS07550: HMPREF1058_RS07550 - alpha/beta hydrolase, at 192,978 to 194,033
_RS07550
HMPREF1058_RS07545: HMPREF1058_RS07545 - hypothetical protein, at 194,312 to 194,491
_RS07545
HMPREF1058_RS07540: HMPREF1058_RS07540 - acetyltransferase, at 194,513 to 195,088
_RS07540
HMPREF1058_RS07535: HMPREF1058_RS07535 - hypothetical protein, at 195,103 to 195,390
_RS07535
Position (kb) 194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 193.357 kb on + strand, within HMPREF1058_RS07550 at 193.477 kb on + strand, within HMPREF1058_RS07550 at 193.506 kb on - strand, within HMPREF1058_RS07550 at 193.741 kb on + strand, within HMPREF1058_RS07550 at 193.764 kb on + strand, within HMPREF1058_RS07550 at 194.159 kb on - strand at 194.301 kb on + strand at 194.312 kb on - strand at 194.373 kb on - strand, within HMPREF1058_RS07545 at 194.448 kb on - strand, within HMPREF1058_RS07545 at 194.490 kb on - strand at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.854 kb on + strand, within HMPREF1058_RS07540 at 194.855 kb on - strand, within HMPREF1058_RS07540 at 195.080 kb on + strand at 195.081 kb on - strand at 195.088 kb on + strand at 195.089 kb on - strand at 195.107 kb on - strand at 195.125 kb on + strand at 195.200 kb on - strand, within HMPREF1058_RS07535 at 195.290 kb on + strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.346 kb on + strand, within HMPREF1058_RS07535 at 195.356 kb on - strand, within HMPREF1058_RS07535 at 195.381 kb on + strand at 195.381 kb on + strand at 195.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 193,357 + HMPREF1058_RS07550 0.36 -1.0 193,477 + HMPREF1058_RS07550 0.47 +0.1 193,506 - HMPREF1058_RS07550 0.50 -1.0 193,741 + HMPREF1058_RS07550 0.72 -0.1 193,764 + HMPREF1058_RS07550 0.74 +1.2 194,159 - -1.1 194,301 + -1.7 194,312 - +0.4 194,373 - HMPREF1058_RS07545 0.34 +2.7 194,448 - HMPREF1058_RS07545 0.76 +0.1 194,490 - -1.7 194,666 + HMPREF1058_RS07540 0.27 +0.5 194,666 + HMPREF1058_RS07540 0.27 -1.1 194,854 + HMPREF1058_RS07540 0.59 -0.5 194,855 - HMPREF1058_RS07540 0.59 +1.7 195,080 + +2.9 195,081 - +0.9 195,088 + +2.9 195,089 - +0.5 195,107 - +0.3 195,125 + -1.1 195,200 - HMPREF1058_RS07535 0.34 +1.2 195,290 + HMPREF1058_RS07535 0.65 -2.1 195,291 - HMPREF1058_RS07535 0.65 -1.7 195,291 - HMPREF1058_RS07535 0.65 -2.4 195,346 + HMPREF1058_RS07535 0.84 -1.1 195,356 - HMPREF1058_RS07535 0.88 -3.1 195,381 + -1.9 195,381 + -0.0 195,491 + +1.2
Or see this region's nucleotide sequence