Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides HMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotides HMPREF1058_RS07070 and HMPREF1058_RS07065 are separated by 332 nucleotides
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384
_RS07065
Position (kb) 322
323
324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.626 kb on - strand, within HMPREF1058_RS07075 at 322.634 kb on - strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.636 kb on - strand, within HMPREF1058_RS07075 at 322.641 kb on - strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.651 kb on - strand, within HMPREF1058_RS07075 at 322.691 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.728 kb on + strand, within HMPREF1058_RS07075 at 322.729 kb on - strand, within HMPREF1058_RS07075 at 322.743 kb on + strand, within HMPREF1058_RS07075 at 322.819 kb on + strand, within HMPREF1058_RS07075 at 322.853 kb on + strand at 322.856 kb on + strand at 322.856 kb on + strand at 322.857 kb on - strand at 322.857 kb on - strand at 322.858 kb on + strand at 322.860 kb on + strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.865 kb on + strand at 322.865 kb on + strand at 322.866 kb on - strand at 322.867 kb on + strand at 322.871 kb on - strand at 322.904 kb on - strand at 322.906 kb on - strand at 322.910 kb on + strand at 322.959 kb on + strand at 323.005 kb on - strand at 323.005 kb on - strand at 323.008 kb on - strand at 323.041 kb on + strand at 323.042 kb on - strand at 323.052 kb on + strand at 323.170 kb on + strand at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.207 kb on + strand, within HMPREF1058_RS07070 at 323.208 kb on - strand, within HMPREF1058_RS07070 at 323.280 kb on - strand, within HMPREF1058_RS07070 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070 at 323.922 kb on - strand at 323.965 kb on + strand at 323.965 kb on + strand at 323.966 kb on - strand at 324.002 kb on + strand at 324.004 kb on + strand at 324.004 kb on + strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.006 kb on + strand at 324.007 kb on - strand at 324.007 kb on - strand at 324.027 kb on + strand at 324.027 kb on + strand at 324.041 kb on - strand at 324.042 kb on + strand at 324.042 kb on + strand at 324.043 kb on - strand at 324.045 kb on - strand at 324.045 kb on - strand at 324.056 kb on - strand at 324.140 kb on + strand at 324.140 kb on + strand at 324.141 kb on - strand at 324.193 kb on - strand at 324.242 kb on - strand at 324.308 kb on - strand at 324.325 kb on - strand at 324.412 kb on - strand, within HMPREF1058_RS07065 at 324.495 kb on + strand, within HMPREF1058_RS07065 at 324.540 kb on - strand, within HMPREF1058_RS07065 at 324.544 kb on + strand, within HMPREF1058_RS07065 at 324.550 kb on + strand, within HMPREF1058_RS07065 at 324.551 kb on - strand, within HMPREF1058_RS07065 at 324.592 kb on + strand, within HMPREF1058_RS07065 at 324.639 kb on - strand, within HMPREF1058_RS07065 at 324.687 kb on - strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.737 kb on + strand, within HMPREF1058_RS07065 at 324.738 kb on - strand, within HMPREF1058_RS07065 at 324.761 kb on - strand, within HMPREF1058_RS07065 at 324.844 kb on + strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.890 kb on - strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.954 kb on + strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 322,024 + HMPREF1058_RS07080 0.29 -1.8 322,025 - HMPREF1058_RS07080 0.29 +0.5 322,025 - HMPREF1058_RS07080 0.29 +0.8 322,042 - HMPREF1058_RS07080 0.38 -3.9 322,046 - HMPREF1058_RS07080 0.40 +1.3 322,149 + +0.6 322,149 + -0.3 322,149 + -2.8 322,305 + -0.7 322,307 + +3.1 322,327 + +3.9 322,327 + -1.6 322,329 + -0.3 322,348 + -1.7 322,349 - -3.3 322,352 - -0.0 322,352 - -1.6 322,386 - -3.2 322,454 - HMPREF1058_RS07075 0.16 -3.8 322,465 + HMPREF1058_RS07075 0.18 -1.0 322,465 + HMPREF1058_RS07075 0.18 -0.0 322,626 - HMPREF1058_RS07075 0.50 -1.0 322,634 - HMPREF1058_RS07075 0.52 -3.3 322,635 + HMPREF1058_RS07075 0.52 -1.0 322,635 + HMPREF1058_RS07075 0.52 -1.6 322,636 - HMPREF1058_RS07075 0.52 -1.6 322,641 - HMPREF1058_RS07075 0.53 -1.0 322,643 + HMPREF1058_RS07075 0.54 -0.4 322,643 + HMPREF1058_RS07075 0.54 -0.0 322,651 - HMPREF1058_RS07075 0.55 -2.0 322,691 - HMPREF1058_RS07075 0.63 -1.0 322,709 - HMPREF1058_RS07075 0.67 -3.7 322,709 - HMPREF1058_RS07075 0.67 -0.7 322,728 + HMPREF1058_RS07075 0.71 -1.6 322,729 - HMPREF1058_RS07075 0.71 -2.3 322,743 + HMPREF1058_RS07075 0.74 -1.9 322,819 + HMPREF1058_RS07075 0.89 -1.3 322,853 + -1.0 322,856 + -0.8 322,856 + +0.8 322,857 - -1.6 322,857 - -1.0 322,858 + -2.8 322,860 + +1.7 322,861 - +1.6 322,861 - +0.1 322,861 - -0.9 322,865 + -1.2 322,865 + -2.9 322,866 - +1.4 322,867 + +1.8 322,871 - -1.0 322,904 - +0.6 322,906 - -1.7 322,910 + -2.7 322,959 + -1.0 323,005 - -2.8 323,005 - -4.3 323,008 - -1.6 323,041 + -2.3 323,042 - -0.2 323,052 + -0.0 323,170 + -0.0 323,196 - HMPREF1058_RS07070 0.21 -1.0 323,196 - HMPREF1058_RS07070 0.21 +1.8 323,207 + HMPREF1058_RS07070 0.22 -1.3 323,208 - HMPREF1058_RS07070 0.22 -1.6 323,280 - HMPREF1058_RS07070 0.29 -4.1 323,338 + HMPREF1058_RS07070 0.35 +1.0 323,353 + HMPREF1058_RS07070 0.37 -2.6 323,369 + HMPREF1058_RS07070 0.39 +0.8 323,369 + HMPREF1058_RS07070 0.39 -0.0 323,372 + HMPREF1058_RS07070 0.39 -1.2 323,397 + HMPREF1058_RS07070 0.42 -3.5 323,408 + HMPREF1058_RS07070 0.43 -1.5 323,408 + HMPREF1058_RS07070 0.43 -1.0 323,502 + HMPREF1058_RS07070 0.53 -1.7 323,510 - HMPREF1058_RS07070 0.53 -4.7 323,534 + HMPREF1058_RS07070 0.56 +0.1 323,616 - HMPREF1058_RS07070 0.64 +1.6 323,709 - HMPREF1058_RS07070 0.74 -1.8 323,709 - HMPREF1058_RS07070 0.74 -2.8 323,712 + HMPREF1058_RS07070 0.74 -0.9 323,713 - HMPREF1058_RS07070 0.74 -2.3 323,725 - HMPREF1058_RS07070 0.76 +0.6 323,725 - HMPREF1058_RS07070 0.76 -1.0 323,732 + HMPREF1058_RS07070 0.76 +1.8 323,733 - HMPREF1058_RS07070 0.77 -0.6 323,733 - HMPREF1058_RS07070 0.77 +0.5 323,798 + HMPREF1058_RS07070 0.83 -1.2 323,798 + HMPREF1058_RS07070 0.83 +1.2 323,799 - HMPREF1058_RS07070 0.83 -1.6 323,858 + HMPREF1058_RS07070 0.90 -0.3 323,922 - +2.9 323,965 + -0.8 323,965 + -3.0 323,966 - -0.5 324,002 + -1.0 324,004 + -0.5 324,004 + +0.2 324,005 - -1.3 324,005 - -0.0 324,005 - +0.5 324,006 + +0.9 324,007 - -0.9 324,007 - -0.6 324,027 + -1.0 324,027 + -0.6 324,041 - +0.9 324,042 + -0.4 324,042 + +1.3 324,043 - -1.9 324,045 - -0.9 324,045 - -0.6 324,056 - -1.6 324,140 + -0.7 324,140 + -2.3 324,141 - -0.6 324,193 - -0.4 324,242 - -0.6 324,308 - -4.4 324,325 - -2.8 324,412 - HMPREF1058_RS07065 0.11 -2.3 324,495 + HMPREF1058_RS07065 0.19 -2.6 324,540 - HMPREF1058_RS07065 0.23 -1.8 324,544 + HMPREF1058_RS07065 0.23 -2.0 324,550 + HMPREF1058_RS07065 0.24 -3.3 324,551 - HMPREF1058_RS07065 0.24 -2.3 324,592 + HMPREF1058_RS07065 0.28 -2.6 324,639 - HMPREF1058_RS07065 0.32 +1.0 324,687 - HMPREF1058_RS07065 0.36 -0.3 324,732 + HMPREF1058_RS07065 0.40 -2.1 324,732 + HMPREF1058_RS07065 0.40 -1.2 324,737 + HMPREF1058_RS07065 0.41 -1.6 324,738 - HMPREF1058_RS07065 0.41 -3.0 324,761 - HMPREF1058_RS07065 0.43 -1.6 324,844 + HMPREF1058_RS07065 0.51 -1.6 324,845 - HMPREF1058_RS07065 0.51 -2.3 324,845 - HMPREF1058_RS07065 0.51 -0.7 324,890 - HMPREF1058_RS07065 0.55 -0.4 324,919 + HMPREF1058_RS07065 0.57 -1.0 324,919 + HMPREF1058_RS07065 0.57 -0.0 324,954 + HMPREF1058_RS07065 0.61 -2.9 324,955 - HMPREF1058_RS07065 0.61 -1.0 324,955 - HMPREF1058_RS07065 0.61 -0.0
Or see this region's nucleotide sequence