Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07005 and HMPREF1058_RS07000 are separated by 89 nucleotides HMPREF1058_RS07000 and HMPREF1058_RS06995 are separated by 124 nucleotides
HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315
_RS07005
HMPREF1058_RS07000: HMPREF1058_RS07000 - DNA/RNA non-specific endonuclease, at 338,405 to 339,262
_RS07000
HMPREF1058_RS06995: HMPREF1058_RS06995 - alpha-L-fucosidase, at 339,387 to 340,736
_RS06995
Position (kb) 338
339
340 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.479 kb on + strand, within HMPREF1058_RS07005 at 337.551 kb on + strand, within HMPREF1058_RS07005 at 337.664 kb on + strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.933 kb on - strand, within HMPREF1058_RS07005 at 337.951 kb on - strand, within HMPREF1058_RS07005 at 337.952 kb on + strand, within HMPREF1058_RS07005 at 337.953 kb on - strand, within HMPREF1058_RS07005 at 337.971 kb on - strand, within HMPREF1058_RS07005 at 337.975 kb on - strand, within HMPREF1058_RS07005 at 338.011 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.039 kb on - strand, within HMPREF1058_RS07005 at 338.119 kb on + strand, within HMPREF1058_RS07005 at 338.186 kb on - strand at 338.193 kb on + strand at 338.194 kb on - strand at 338.199 kb on - strand at 338.313 kb on + strand at 338.322 kb on + strand at 338.344 kb on + strand at 338.344 kb on + strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.348 kb on + strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.366 kb on + strand at 338.366 kb on + strand at 338.367 kb on - strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.374 kb on + strand at 338.516 kb on - strand, within HMPREF1058_RS07000 at 338.533 kb on + strand, within HMPREF1058_RS07000 at 338.558 kb on - strand, within HMPREF1058_RS07000 at 338.659 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.688 kb on + strand, within HMPREF1058_RS07000 at 338.689 kb on - strand, within HMPREF1058_RS07000 at 338.789 kb on - strand, within HMPREF1058_RS07000 at 338.790 kb on + strand, within HMPREF1058_RS07000 at 338.791 kb on - strand, within HMPREF1058_RS07000 at 338.873 kb on - strand, within HMPREF1058_RS07000 at 338.885 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 339.008 kb on - strand, within HMPREF1058_RS07000 at 339.009 kb on + strand, within HMPREF1058_RS07000 at 339.019 kb on + strand, within HMPREF1058_RS07000 at 339.020 kb on - strand, within HMPREF1058_RS07000 at 339.053 kb on - strand at 339.063 kb on - strand, within HMPREF1058_RS07000 at 339.181 kb on + strand at 339.182 kb on - strand at 339.184 kb on - strand at 339.203 kb on + strand at 339.204 kb on - strand at 339.295 kb on + strand at 339.326 kb on + strand at 339.327 kb on - strand at 339.328 kb on + strand at 339.346 kb on + strand at 339.356 kb on - strand at 339.382 kb on + strand at 339.384 kb on + strand at 339.385 kb on - strand at 339.385 kb on - strand at 339.459 kb on - strand at 339.459 kb on - strand at 339.528 kb on - strand, within HMPREF1058_RS06995 at 339.550 kb on - strand, within HMPREF1058_RS06995 at 339.595 kb on - strand, within HMPREF1058_RS06995 at 339.603 kb on + strand, within HMPREF1058_RS06995 at 339.612 kb on + strand, within HMPREF1058_RS06995 at 339.649 kb on - strand at 339.697 kb on - strand, within HMPREF1058_RS06995 at 339.698 kb on + strand, within HMPREF1058_RS06995 at 339.706 kb on + strand, within HMPREF1058_RS06995 at 339.707 kb on - strand, within HMPREF1058_RS06995 at 339.759 kb on - strand, within HMPREF1058_RS06995 at 339.821 kb on - strand, within HMPREF1058_RS06995 at 339.850 kb on - strand, within HMPREF1058_RS06995 at 339.850 kb on - strand, within HMPREF1058_RS06995 at 339.908 kb on - strand, within HMPREF1058_RS06995 at 339.914 kb on + strand, within HMPREF1058_RS06995 at 339.915 kb on - strand, within HMPREF1058_RS06995 at 340.061 kb on - strand, within HMPREF1058_RS06995 at 340.131 kb on - strand, within HMPREF1058_RS06995 at 340.173 kb on + strand, within HMPREF1058_RS06995 at 340.173 kb on + strand, within HMPREF1058_RS06995 at 340.233 kb on + strand, within HMPREF1058_RS06995 at 340.235 kb on + strand, within HMPREF1058_RS06995 at 340.245 kb on + strand, within HMPREF1058_RS06995 at 340.245 kb on + strand, within HMPREF1058_RS06995 at 340.246 kb on - strand, within HMPREF1058_RS06995 at 340.247 kb on + strand, within HMPREF1058_RS06995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 337,434 + HMPREF1058_RS07005 0.42 -4.1 337,434 + HMPREF1058_RS07005 0.42 -0.0 337,434 + HMPREF1058_RS07005 0.42 -1.8 337,435 - HMPREF1058_RS07005 0.42 -0.0 337,435 - HMPREF1058_RS07005 0.42 -0.0 337,479 + HMPREF1058_RS07005 0.45 -2.3 337,551 + HMPREF1058_RS07005 0.50 -0.4 337,664 + HMPREF1058_RS07005 0.57 -1.4 337,834 - HMPREF1058_RS07005 0.68 -4.7 337,834 - HMPREF1058_RS07005 0.68 -1.6 337,933 - HMPREF1058_RS07005 0.75 -2.3 337,951 - HMPREF1058_RS07005 0.76 -3.1 337,952 + HMPREF1058_RS07005 0.76 -4.1 337,953 - HMPREF1058_RS07005 0.76 -3.0 337,971 - HMPREF1058_RS07005 0.77 -2.8 337,975 - HMPREF1058_RS07005 0.78 -0.0 338,011 + HMPREF1058_RS07005 0.80 -2.8 338,024 + HMPREF1058_RS07005 0.81 -2.4 338,024 + HMPREF1058_RS07005 0.81 -3.0 338,039 - HMPREF1058_RS07005 0.82 -0.0 338,119 + HMPREF1058_RS07005 0.87 -2.8 338,186 - -1.1 338,193 + -2.0 338,194 - -2.9 338,199 - -1.4 338,313 + +0.4 338,322 + -0.5 338,344 + +0.7 338,344 + +1.9 338,345 - -0.0 338,345 - +1.1 338,345 - +1.0 338,348 + +0.2 338,349 - +2.4 338,349 - +1.2 338,349 - +1.3 338,362 + +2.2 338,362 + -0.0 338,362 + +1.5 338,362 + -1.0 338,363 - -4.2 338,363 - +1.0 338,363 - +0.5 338,366 + -1.0 338,366 + -1.3 338,367 - -2.0 338,370 + +2.9 338,370 + +0.5 338,370 + +2.8 338,370 + -1.4 338,370 + +2.5 338,371 - -0.7 338,371 - +0.2 338,371 - +2.0 338,371 - +1.7 338,371 - -0.1 338,374 + -3.0 338,516 - HMPREF1058_RS07000 0.13 +0.5 338,533 + HMPREF1058_RS07000 0.15 -1.6 338,558 - HMPREF1058_RS07000 0.18 +1.3 338,659 + HMPREF1058_RS07000 0.30 +1.7 338,667 + HMPREF1058_RS07000 0.31 +0.9 338,667 + HMPREF1058_RS07000 0.31 -0.3 338,668 - HMPREF1058_RS07000 0.31 +2.7 338,668 - HMPREF1058_RS07000 0.31 -0.4 338,668 - HMPREF1058_RS07000 0.31 +0.9 338,669 + HMPREF1058_RS07000 0.31 -0.1 338,669 + HMPREF1058_RS07000 0.31 -1.6 338,669 + HMPREF1058_RS07000 0.31 +1.2 338,670 - HMPREF1058_RS07000 0.31 -0.5 338,670 - HMPREF1058_RS07000 0.31 -3.4 338,670 - HMPREF1058_RS07000 0.31 +1.2 338,688 + HMPREF1058_RS07000 0.33 +0.3 338,689 - HMPREF1058_RS07000 0.33 +2.1 338,789 - HMPREF1058_RS07000 0.45 -1.0 338,790 + HMPREF1058_RS07000 0.45 +1.4 338,791 - HMPREF1058_RS07000 0.45 +1.6 338,873 - HMPREF1058_RS07000 0.55 -0.0 338,885 - HMPREF1058_RS07000 0.56 +0.3 338,887 - HMPREF1058_RS07000 0.56 +0.1 338,887 - HMPREF1058_RS07000 0.56 +2.8 338,904 - HMPREF1058_RS07000 0.58 +3.5 338,904 - HMPREF1058_RS07000 0.58 -1.6 339,008 - HMPREF1058_RS07000 0.70 +0.6 339,009 + HMPREF1058_RS07000 0.70 +1.3 339,019 + HMPREF1058_RS07000 0.72 +1.7 339,020 - HMPREF1058_RS07000 0.72 -1.6 339,053 - +4.4 339,063 - HMPREF1058_RS07000 0.77 -1.8 339,181 + -0.0 339,182 - -3.0 339,184 - -1.2 339,203 + +1.0 339,204 - -1.2 339,295 + -0.0 339,326 + +0.7 339,327 - -0.5 339,328 + +0.2 339,346 + -1.0 339,356 - +0.2 339,382 + -0.0 339,384 + -1.6 339,385 - +1.2 339,385 - +0.1 339,459 - +1.5 339,459 - -0.0 339,528 - HMPREF1058_RS06995 0.10 -0.7 339,550 - HMPREF1058_RS06995 0.12 -1.0 339,595 - HMPREF1058_RS06995 0.15 +0.3 339,603 + HMPREF1058_RS06995 0.16 +3.3 339,612 + HMPREF1058_RS06995 0.17 +2.3 339,649 - +1.6 339,697 - HMPREF1058_RS06995 0.23 -0.8 339,698 + HMPREF1058_RS06995 0.23 -0.0 339,706 + HMPREF1058_RS06995 0.24 -0.7 339,707 - HMPREF1058_RS06995 0.24 -0.2 339,759 - HMPREF1058_RS06995 0.28 +0.8 339,821 - HMPREF1058_RS06995 0.32 -0.4 339,850 - HMPREF1058_RS06995 0.34 +2.7 339,850 - HMPREF1058_RS06995 0.34 +0.1 339,908 - HMPREF1058_RS06995 0.39 -0.5 339,914 + HMPREF1058_RS06995 0.39 -0.4 339,915 - HMPREF1058_RS06995 0.39 -0.8 340,061 - HMPREF1058_RS06995 0.50 +0.3 340,131 - HMPREF1058_RS06995 0.55 -1.4 340,173 + HMPREF1058_RS06995 0.58 +1.0 340,173 + HMPREF1058_RS06995 0.58 -1.2 340,233 + HMPREF1058_RS06995 0.63 -2.8 340,235 + HMPREF1058_RS06995 0.63 -1.8 340,245 + HMPREF1058_RS06995 0.64 -0.3 340,245 + HMPREF1058_RS06995 0.64 -2.4 340,246 - HMPREF1058_RS06995 0.64 +1.0 340,247 + HMPREF1058_RS06995 0.64 -0.3
Or see this region's nucleotide sequence