Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06810 and HMPREF1058_RS06805 are separated by 4 nucleotides HMPREF1058_RS06805 and HMPREF1058_RS06800 are separated by 3 nucleotides
HMPREF1058_RS06810: HMPREF1058_RS06810 - response regulator, at 391,681 to 392,820
_RS06810
HMPREF1058_RS06805: HMPREF1058_RS06805 - endonuclease/exonuclease/phosphatase family protein, at 392,825 to 393,886
_RS06805
HMPREF1058_RS06800: HMPREF1058_RS06800 - response regulator, at 393,890 to 395,740
_RS06800
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.941 kb on + strand, within HMPREF1058_RS06810 at 391.942 kb on - strand, within HMPREF1058_RS06810 at 391.985 kb on + strand, within HMPREF1058_RS06810 at 391.986 kb on - strand, within HMPREF1058_RS06810 at 392.034 kb on + strand, within HMPREF1058_RS06810 at 392.035 kb on - strand, within HMPREF1058_RS06810 at 392.038 kb on - strand, within HMPREF1058_RS06810 at 392.130 kb on + strand, within HMPREF1058_RS06810 at 392.152 kb on + strand, within HMPREF1058_RS06810 at 392.262 kb on + strand, within HMPREF1058_RS06810 at 392.357 kb on + strand, within HMPREF1058_RS06810 at 392.389 kb on - strand, within HMPREF1058_RS06810 at 392.438 kb on + strand, within HMPREF1058_RS06810 at 392.532 kb on + strand, within HMPREF1058_RS06810 at 392.534 kb on - strand, within HMPREF1058_RS06810 at 392.545 kb on - strand, within HMPREF1058_RS06810 at 392.594 kb on + strand, within HMPREF1058_RS06810 at 392.594 kb on + strand, within HMPREF1058_RS06810 at 392.688 kb on + strand, within HMPREF1058_RS06810 at 392.717 kb on + strand at 392.718 kb on - strand at 392.721 kb on - strand at 392.721 kb on - strand at 392.757 kb on - strand at 392.866 kb on + strand at 392.872 kb on - strand at 392.886 kb on + strand at 392.887 kb on - strand at 392.887 kb on - strand at 392.922 kb on + strand at 392.922 kb on + strand at 392.923 kb on - strand at 393.059 kb on + strand, within HMPREF1058_RS06805 at 393.059 kb on + strand, within HMPREF1058_RS06805 at 393.163 kb on - strand, within HMPREF1058_RS06805 at 393.413 kb on - strand, within HMPREF1058_RS06805 at 393.421 kb on + strand, within HMPREF1058_RS06805 at 393.429 kb on - strand, within HMPREF1058_RS06805 at 393.564 kb on + strand, within HMPREF1058_RS06805 at 393.564 kb on + strand, within HMPREF1058_RS06805 at 393.636 kb on + strand, within HMPREF1058_RS06805 at 393.785 kb on + strand at 393.845 kb on - strand at 393.845 kb on - strand at 393.902 kb on + strand at 393.902 kb on + strand at 393.906 kb on + strand at 393.917 kb on - strand at 393.986 kb on + strand at 393.987 kb on - strand at 393.987 kb on - strand at 394.002 kb on + strand at 394.008 kb on + strand at 394.016 kb on + strand at 394.094 kb on + strand, within HMPREF1058_RS06800 at 394.095 kb on - strand, within HMPREF1058_RS06800 at 394.096 kb on + strand, within HMPREF1058_RS06800 at 394.123 kb on - strand, within HMPREF1058_RS06800 at 394.137 kb on - strand, within HMPREF1058_RS06800 at 394.264 kb on + strand, within HMPREF1058_RS06800 at 394.265 kb on - strand, within HMPREF1058_RS06800 at 394.313 kb on - strand, within HMPREF1058_RS06800 at 394.386 kb on - strand, within HMPREF1058_RS06800 at 394.397 kb on + strand, within HMPREF1058_RS06800 at 394.526 kb on + strand, within HMPREF1058_RS06800 at 394.574 kb on - strand, within HMPREF1058_RS06800 at 394.603 kb on + strand, within HMPREF1058_RS06800 at 394.603 kb on + strand, within HMPREF1058_RS06800 at 394.604 kb on - strand, within HMPREF1058_RS06800 at 394.716 kb on + strand, within HMPREF1058_RS06800 at 394.728 kb on - strand, within HMPREF1058_RS06800 at 394.764 kb on + strand, within HMPREF1058_RS06800 at 394.765 kb on - strand, within HMPREF1058_RS06800 at 394.856 kb on - strand, within HMPREF1058_RS06800 at 394.863 kb on + strand, within HMPREF1058_RS06800
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 391,941 + HMPREF1058_RS06810 0.23 +1.3 391,942 - HMPREF1058_RS06810 0.23 +0.5 391,985 + HMPREF1058_RS06810 0.27 +1.1 391,986 - HMPREF1058_RS06810 0.27 -0.3 392,034 + HMPREF1058_RS06810 0.31 +1.0 392,035 - HMPREF1058_RS06810 0.31 -1.6 392,038 - HMPREF1058_RS06810 0.31 +0.3 392,130 + HMPREF1058_RS06810 0.39 +1.6 392,152 + HMPREF1058_RS06810 0.41 +0.2 392,262 + HMPREF1058_RS06810 0.51 -1.6 392,357 + HMPREF1058_RS06810 0.59 -0.6 392,389 - HMPREF1058_RS06810 0.62 -0.2 392,438 + HMPREF1058_RS06810 0.66 +0.3 392,532 + HMPREF1058_RS06810 0.75 +0.4 392,534 - HMPREF1058_RS06810 0.75 +0.6 392,545 - HMPREF1058_RS06810 0.76 -1.3 392,594 + HMPREF1058_RS06810 0.80 -2.2 392,594 + HMPREF1058_RS06810 0.80 -3.0 392,688 + HMPREF1058_RS06810 0.88 +0.4 392,717 + -0.1 392,718 - +0.7 392,721 - +1.4 392,721 - +0.7 392,757 - +1.0 392,866 + +2.3 392,872 - +0.2 392,886 + -0.7 392,887 - -0.0 392,887 - -1.6 392,922 + -0.8 392,922 + -1.2 392,923 - -1.3 393,059 + HMPREF1058_RS06805 0.22 +2.2 393,059 + HMPREF1058_RS06805 0.22 +1.7 393,163 - HMPREF1058_RS06805 0.32 -1.0 393,413 - HMPREF1058_RS06805 0.55 +1.6 393,421 + HMPREF1058_RS06805 0.56 -1.0 393,429 - HMPREF1058_RS06805 0.57 -2.3 393,564 + HMPREF1058_RS06805 0.70 +0.4 393,564 + HMPREF1058_RS06805 0.70 +1.1 393,636 + HMPREF1058_RS06805 0.76 +0.9 393,785 + -0.6 393,845 - -1.6 393,845 - +0.1 393,902 + -0.4 393,902 + -1.6 393,906 + -1.4 393,917 - +1.0 393,986 + +1.2 393,987 - +1.6 393,987 - +1.2 394,002 + -1.8 394,008 + -2.0 394,016 + -0.8 394,094 + HMPREF1058_RS06800 0.11 -0.3 394,095 - HMPREF1058_RS06800 0.11 +1.2 394,096 + HMPREF1058_RS06800 0.11 -0.0 394,123 - HMPREF1058_RS06800 0.13 +1.2 394,137 - HMPREF1058_RS06800 0.13 -0.4 394,264 + HMPREF1058_RS06800 0.20 -3.7 394,265 - HMPREF1058_RS06800 0.20 +0.5 394,313 - HMPREF1058_RS06800 0.23 -2.8 394,386 - HMPREF1058_RS06800 0.27 -1.1 394,397 + HMPREF1058_RS06800 0.27 -0.0 394,526 + HMPREF1058_RS06800 0.34 +1.7 394,574 - HMPREF1058_RS06800 0.37 -0.0 394,603 + HMPREF1058_RS06800 0.39 -3.0 394,603 + HMPREF1058_RS06800 0.39 -0.4 394,604 - HMPREF1058_RS06800 0.39 -3.0 394,716 + HMPREF1058_RS06800 0.45 -0.3 394,728 - HMPREF1058_RS06800 0.45 +1.0 394,764 + HMPREF1058_RS06800 0.47 +1.8 394,765 - HMPREF1058_RS06800 0.47 -0.4 394,856 - HMPREF1058_RS06800 0.52 +0.2 394,863 + HMPREF1058_RS06800 0.53 +1.0
Or see this region's nucleotide sequence