Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06215

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06220 and HMPREF1058_RS0119805 are separated by 324 nucleotidesHMPREF1058_RS0119805 and HMPREF1058_RS06215 overlap by 11 nucleotidesHMPREF1058_RS06215 and HMPREF1058_RS06210 are separated by 556 nucleotidesHMPREF1058_RS06210 and HMPREF1058_RS06205 are separated by 48 nucleotides HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560 _RS06220 HMPREF1058_RS0119805: HMPREF1058_RS0119805 - lysine exporter LysO family protein, at 533,885 to 534,505 _RS0119805 HMPREF1058_RS06215: HMPREF1058_RS06215 - LysO family transporter, at 534,495 to 534,782 _RS06215 HMPREF1058_RS06210: HMPREF1058_RS06210 - antibiotic biosynthesis monooxygenase, at 535,339 to 535,614 _RS06210 HMPREF1058_RS06205: HMPREF1058_RS06205 - glycosyltransferase, at 535,663 to 536,820 _RS06205 Position (kb) 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 533.614 kb on + strandat 533.642 kb on + strandat 533.664 kb on + strandat 533.665 kb on - strandat 533.690 kb on - strandat 533.701 kb on + strandat 533.711 kb on + strandat 533.734 kb on - strandat 533.797 kb on + strandat 533.853 kb on - strandat 533.862 kb on + strandat 533.864 kb on + strandat 533.864 kb on + strandat 533.864 kb on + strandat 533.865 kb on - strandat 533.867 kb on + strandat 533.868 kb on - strandat 533.924 kb on + strandat 533.924 kb on + strandat 533.925 kb on - strandat 533.925 kb on - strandat 533.930 kb on + strandat 534.077 kb on + strand, within HMPREF1058_RS0119805at 534.104 kb on - strand, within HMPREF1058_RS0119805at 534.113 kb on + strand, within HMPREF1058_RS0119805at 534.202 kb on - strand, within HMPREF1058_RS0119805at 534.396 kb on - strand, within HMPREF1058_RS0119805at 534.399 kb on + strand, within HMPREF1058_RS0119805at 534.399 kb on + strand, within HMPREF1058_RS0119805at 534.399 kb on + strand, within HMPREF1058_RS0119805at 534.400 kb on - strand, within HMPREF1058_RS0119805at 534.400 kb on - strand, within HMPREF1058_RS0119805at 534.400 kb on - strand, within HMPREF1058_RS0119805at 534.400 kb on - strand, within HMPREF1058_RS0119805at 534.401 kb on + strand, within HMPREF1058_RS0119805at 534.401 kb on + strand, within HMPREF1058_RS0119805at 534.401 kb on + strand, within HMPREF1058_RS0119805at 534.404 kb on + strand, within HMPREF1058_RS0119805at 534.404 kb on + strand, within HMPREF1058_RS0119805at 534.404 kb on + strand, within HMPREF1058_RS0119805at 534.405 kb on - strand, within HMPREF1058_RS0119805at 534.405 kb on - strand, within HMPREF1058_RS0119805at 534.405 kb on - strand, within HMPREF1058_RS0119805at 534.408 kb on + strand, within HMPREF1058_RS0119805at 534.408 kb on + strand, within HMPREF1058_RS0119805at 534.408 kb on + strand, within HMPREF1058_RS0119805at 534.408 kb on + strand, within HMPREF1058_RS0119805at 534.409 kb on - strand, within HMPREF1058_RS0119805at 534.409 kb on - strand, within HMPREF1058_RS0119805at 534.409 kb on - strand, within HMPREF1058_RS0119805at 534.410 kb on + strand, within HMPREF1058_RS0119805at 534.488 kb on + strandat 534.539 kb on - strand, within HMPREF1058_RS06215at 534.541 kb on - strand, within HMPREF1058_RS06215at 534.570 kb on + strand, within HMPREF1058_RS06215at 534.577 kb on - strand, within HMPREF1058_RS06215at 534.627 kb on - strand, within HMPREF1058_RS06215at 534.741 kb on + strand, within HMPREF1058_RS06215at 534.741 kb on + strand, within HMPREF1058_RS06215at 534.741 kb on + strand, within HMPREF1058_RS06215at 534.741 kb on + strand, within HMPREF1058_RS06215at 534.742 kb on - strand, within HMPREF1058_RS06215at 534.742 kb on - strand, within HMPREF1058_RS06215at 534.742 kb on - strand, within HMPREF1058_RS06215at 534.742 kb on - strand, within HMPREF1058_RS06215at 534.765 kb on - strandat 534.813 kb on - strandat 534.816 kb on - strandat 534.819 kb on + strandat 534.851 kb on + strandat 534.851 kb on + strandat 534.852 kb on - strandat 534.853 kb on + strandat 534.853 kb on + strandat 534.895 kb on + strandat 534.900 kb on - strandat 534.977 kb on + strandat 534.984 kb on - strandat 535.026 kb on - strandat 535.090 kb on + strandat 535.091 kb on - strandat 535.199 kb on - strandat 535.225 kb on + strandat 535.225 kb on + strandat 535.291 kb on + strandat 535.586 kb on - strand, within HMPREF1058_RS06210at 535.586 kb on - strand, within HMPREF1058_RS06210at 535.594 kb on - strandat 535.604 kb on - strandat 535.627 kb on + strandat 535.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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533,614 + -2.2
533,642 + +0.3
533,664 + -0.2
533,665 - +2.3
533,690 - +1.4
533,701 + -0.1
533,711 + +2.0
533,734 - +0.8
533,797 + +1.1
533,853 - -0.0
533,862 + +1.8
533,864 + -3.3
533,864 + +1.0
533,864 + -2.3
533,865 - +0.9
533,867 + -0.6
533,868 - +0.6
533,924 + -1.6
533,924 + -1.8
533,925 - +0.4
533,925 - -1.0
533,930 + -0.8
534,077 + HMPREF1058_RS0119805 0.31 +0.7
534,104 - HMPREF1058_RS0119805 0.35 -0.0
534,113 + HMPREF1058_RS0119805 0.37 -1.7
534,202 - HMPREF1058_RS0119805 0.51 -0.1
534,396 - HMPREF1058_RS0119805 0.82 +0.3
534,399 + HMPREF1058_RS0119805 0.83 -1.0
534,399 + HMPREF1058_RS0119805 0.83 -3.3
534,399 + HMPREF1058_RS0119805 0.83 -0.0
534,400 - HMPREF1058_RS0119805 0.83 -2.0
534,400 - HMPREF1058_RS0119805 0.83 -0.9
534,400 - HMPREF1058_RS0119805 0.83 +0.6
534,400 - HMPREF1058_RS0119805 0.83 -0.1
534,401 + HMPREF1058_RS0119805 0.83 +1.6
534,401 + HMPREF1058_RS0119805 0.83 -2.0
534,401 + HMPREF1058_RS0119805 0.83 -2.2
534,404 + HMPREF1058_RS0119805 0.84 -2.0
534,404 + HMPREF1058_RS0119805 0.84 -1.6
534,404 + HMPREF1058_RS0119805 0.84 -1.4
534,405 - HMPREF1058_RS0119805 0.84 -2.5
534,405 - HMPREF1058_RS0119805 0.84 +2.5
534,405 - HMPREF1058_RS0119805 0.84 +0.8
534,408 + HMPREF1058_RS0119805 0.84 +1.3
534,408 + HMPREF1058_RS0119805 0.84 +0.3
534,408 + HMPREF1058_RS0119805 0.84 -1.8
534,408 + HMPREF1058_RS0119805 0.84 +1.6
534,409 - HMPREF1058_RS0119805 0.84 -0.0
534,409 - HMPREF1058_RS0119805 0.84 -2.8
534,409 - HMPREF1058_RS0119805 0.84 -0.8
534,410 + HMPREF1058_RS0119805 0.85 -0.8
534,488 + -2.8
534,539 - HMPREF1058_RS06215 0.15 -0.7
534,541 - HMPREF1058_RS06215 0.16 +0.2
534,570 + HMPREF1058_RS06215 0.26 +2.6
534,577 - HMPREF1058_RS06215 0.28 +0.9
534,627 - HMPREF1058_RS06215 0.46 +4.6
534,741 + HMPREF1058_RS06215 0.85 +1.2
534,741 + HMPREF1058_RS06215 0.85 +1.4
534,741 + HMPREF1058_RS06215 0.85 -0.5
534,741 + HMPREF1058_RS06215 0.85 +1.0
534,742 - HMPREF1058_RS06215 0.86 -2.0
534,742 - HMPREF1058_RS06215 0.86 -0.6
534,742 - HMPREF1058_RS06215 0.86 -1.4
534,742 - HMPREF1058_RS06215 0.86 +0.7
534,765 - +1.0
534,813 - +0.7
534,816 - +2.9
534,819 + -0.2
534,851 + -0.0
534,851 + +2.2
534,852 - +0.9
534,853 + -0.5
534,853 + -0.7
534,895 + -0.0
534,900 - -1.0
534,977 + +2.1
534,984 - -0.6
535,026 - -1.6
535,090 + +0.5
535,091 - +5.7
535,199 - +1.5
535,225 + +0.4
535,225 + -1.8
535,291 + -1.4
535,586 - HMPREF1058_RS06210 0.89 -1.7
535,586 - HMPREF1058_RS06210 0.89 -0.0
535,594 - -0.6
535,604 - -0.6
535,627 + +0.4
535,644 - +3.0

Or see this region's nucleotide sequence