Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05470 and HMPREF1058_RS05465 are separated by 212 nucleotides HMPREF1058_RS05465 and HMPREF1058_RS05460 are separated by 126 nucleotides
HMPREF1058_RS05470: HMPREF1058_RS05470 - carboxymuconolactone decarboxylase family protein, at 158,378 to 159,985
_RS05470
HMPREF1058_RS05465: HMPREF1058_RS05465 - DNA-binding protein, at 160,198 to 160,755
_RS05465
HMPREF1058_RS05460: HMPREF1058_RS05460 - aldo/keto reductase, at 160,882 to 162,054
_RS05460
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 159.360 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.939 kb on + strand at 159.940 kb on - strand at 160.008 kb on - strand at 160.048 kb on - strand at 160.121 kb on + strand at 160.122 kb on - strand at 160.122 kb on - strand at 160.229 kb on + strand at 160.236 kb on - strand at 160.252 kb on - strand at 160.331 kb on - strand, within HMPREF1058_RS05465 at 160.557 kb on + strand, within HMPREF1058_RS05465 at 160.558 kb on - strand, within HMPREF1058_RS05465 at 160.558 kb on - strand, within HMPREF1058_RS05465 at 160.566 kb on + strand, within HMPREF1058_RS05465 at 160.580 kb on + strand, within HMPREF1058_RS05465 at 160.596 kb on + strand, within HMPREF1058_RS05465 at 160.713 kb on + strand at 160.768 kb on - strand at 160.768 kb on - strand at 160.769 kb on + strand at 160.770 kb on - strand at 160.790 kb on - strand at 160.790 kb on - strand at 160.810 kb on + strand at 160.811 kb on - strand at 160.812 kb on + strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.890 kb on + strand at 160.891 kb on - strand at 160.901 kb on + strand at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.274 kb on + strand, within HMPREF1058_RS05460 at 161.335 kb on - strand, within HMPREF1058_RS05460 at 161.425 kb on + strand, within HMPREF1058_RS05460 at 161.518 kb on - strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.668 kb on + strand, within HMPREF1058_RS05460 at 161.701 kb on - strand, within HMPREF1058_RS05460 at 161.714 kb on - strand, within HMPREF1058_RS05460
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 159,360 + HMPREF1058_RS05470 0.61 +0.5 159,494 + HMPREF1058_RS05470 0.69 -0.4 159,494 + HMPREF1058_RS05470 0.69 -0.7 159,494 + HMPREF1058_RS05470 0.69 -0.7 159,494 + HMPREF1058_RS05470 0.69 +0.4 159,495 - HMPREF1058_RS05470 0.69 -0.5 159,495 - HMPREF1058_RS05470 0.69 +2.1 159,495 - HMPREF1058_RS05470 0.69 -1.0 159,495 - HMPREF1058_RS05470 0.69 -1.3 159,495 - HMPREF1058_RS05470 0.69 +0.0 159,939 + -1.3 159,940 - -1.6 160,008 - -2.3 160,048 - +1.6 160,121 + +0.4 160,122 - -0.4 160,122 - -1.0 160,229 + -1.3 160,236 - -1.7 160,252 - +0.3 160,331 - HMPREF1058_RS05465 0.24 +0.0 160,557 + HMPREF1058_RS05465 0.64 +0.0 160,558 - HMPREF1058_RS05465 0.65 -1.7 160,558 - HMPREF1058_RS05465 0.65 -0.3 160,566 + HMPREF1058_RS05465 0.66 +4.3 160,580 + HMPREF1058_RS05465 0.68 +1.5 160,596 + HMPREF1058_RS05465 0.71 +1.8 160,713 + -0.4 160,768 - +0.2 160,768 - +1.3 160,769 + -1.4 160,770 - -1.6 160,790 - +1.8 160,790 - +0.2 160,810 + -0.7 160,811 - -1.2 160,812 + -0.7 160,813 - -2.0 160,813 - +0.0 160,813 - +1.2 160,813 - -1.0 160,890 + +2.7 160,891 - +1.6 160,901 + -2.3 161,088 + HMPREF1058_RS05460 0.18 -2.0 161,088 + HMPREF1058_RS05460 0.18 +0.4 161,274 + HMPREF1058_RS05460 0.33 -0.2 161,335 - HMPREF1058_RS05460 0.39 -0.8 161,425 + HMPREF1058_RS05460 0.46 -2.3 161,518 - HMPREF1058_RS05460 0.54 -0.3 161,561 + HMPREF1058_RS05460 0.58 -1.0 161,561 + HMPREF1058_RS05460 0.58 -0.4 161,668 + HMPREF1058_RS05460 0.67 +0.2 161,701 - HMPREF1058_RS05460 0.70 -1.3 161,714 - HMPREF1058_RS05460 0.71 -0.5
Or see this region's nucleotide sequence