Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04805

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotidesHMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotides HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413 _RS04810 HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895 _RS04805 HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462 _RS04800 Position (kb) 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 313.417 kb on + strand, within HMPREF1058_RS04810at 313.430 kb on + strand, within HMPREF1058_RS04810at 313.586 kb on + strand, within HMPREF1058_RS04810at 313.591 kb on + strand, within HMPREF1058_RS04810at 313.768 kb on + strand, within HMPREF1058_RS04810at 313.768 kb on + strand, within HMPREF1058_RS04810at 314.153 kb on - strandat 314.213 kb on - strandat 314.320 kb on + strandat 314.377 kb on - strandat 314.417 kb on + strandat 314.418 kb on - strandat 314.722 kb on - strand, within HMPREF1058_RS04805at 314.754 kb on + strand, within HMPREF1058_RS04805at 314.755 kb on - strand, within HMPREF1058_RS04805at 314.755 kb on - strand, within HMPREF1058_RS04805at 314.760 kb on - strand, within HMPREF1058_RS04805at 314.804 kb on - strand, within HMPREF1058_RS04805at 314.845 kb on + strand, within HMPREF1058_RS04805at 315.010 kb on + strandat 315.013 kb on - strandat 315.020 kb on + strandat 315.020 kb on + strandat 315.034 kb on - strandat 315.089 kb on - strand, within HMPREF1058_RS04800at 315.435 kb on - strand, within HMPREF1058_RS04800at 315.853 kb on + strand, within HMPREF1058_RS04800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
remove
313,417 + HMPREF1058_RS04810 0.76 +0.0
313,430 + HMPREF1058_RS04810 0.76 +0.6
313,586 + HMPREF1058_RS04810 0.80 -0.4
313,591 + HMPREF1058_RS04810 0.80 +2.2
313,768 + HMPREF1058_RS04810 0.84 -0.6
313,768 + HMPREF1058_RS04810 0.84 -1.0
314,153 - +0.9
314,213 - -0.1
314,320 + +0.0
314,377 - -3.3
314,417 + -1.8
314,418 - +5.0
314,722 - HMPREF1058_RS04805 0.64 -2.1
314,754 + HMPREF1058_RS04805 0.71 -1.0
314,755 - HMPREF1058_RS04805 0.71 +0.3
314,755 - HMPREF1058_RS04805 0.71 -0.4
314,760 - HMPREF1058_RS04805 0.72 -0.3
314,804 - HMPREF1058_RS04805 0.81 +4.5
314,845 + HMPREF1058_RS04805 0.90 -1.0
315,010 + -1.6
315,013 - +0.0
315,020 + +2.4
315,020 + -1.0
315,034 - +1.5
315,089 - HMPREF1058_RS04800 0.13 -2.0
315,435 - HMPREF1058_RS04800 0.35 +0.6
315,853 + HMPREF1058_RS04800 0.61 -1.3

Or see this region's nucleotide sequence