Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04200 and HMPREF1058_RS04195 are separated by 409 nucleotides HMPREF1058_RS04195 and HMPREF1058_RS04190 are separated by 37 nucleotides HMPREF1058_RS04190 and HMPREF1058_RS04185 are separated by 268 nucleotides
HMPREF1058_RS04200: HMPREF1058_RS04200 - aspartate kinase, at 95,544 to 96,890
_RS04200
HMPREF1058_RS04195: HMPREF1058_RS04195 - chloramphenicol acetyltransferase, at 97,300 to 97,935
_RS04195
HMPREF1058_RS04190: HMPREF1058_RS04190 - HAD family hydrolase, at 97,973 to 98,662
_RS04190
HMPREF1058_RS04185: HMPREF1058_RS04185 - hypothetical protein, at 98,931 to 99,632
_RS04185
Position (kb) 97
98 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 96.334 kb on + strand, within HMPREF1058_RS04200 at 96.471 kb on - strand, within HMPREF1058_RS04200 at 96.520 kb on + strand, within HMPREF1058_RS04200 at 96.563 kb on + strand, within HMPREF1058_RS04200 at 96.586 kb on + strand, within HMPREF1058_RS04200 at 96.587 kb on - strand, within HMPREF1058_RS04200 at 96.599 kb on - strand, within HMPREF1058_RS04200 at 96.603 kb on - strand, within HMPREF1058_RS04200 at 96.606 kb on + strand, within HMPREF1058_RS04200 at 96.606 kb on + strand, within HMPREF1058_RS04200 at 96.607 kb on - strand, within HMPREF1058_RS04200 at 96.617 kb on - strand, within HMPREF1058_RS04200 at 96.678 kb on - strand at 96.700 kb on + strand at 96.700 kb on + strand, within HMPREF1058_RS04200 at 96.725 kb on - strand, within HMPREF1058_RS04200 at 96.729 kb on - strand, within HMPREF1058_RS04200 at 96.854 kb on - strand at 96.868 kb on + strand at 96.958 kb on + strand at 96.980 kb on - strand at 97.013 kb on + strand at 97.087 kb on - strand at 97.089 kb on - strand at 97.168 kb on + strand at 97.204 kb on + strand at 97.233 kb on - strand at 97.256 kb on + strand at 97.268 kb on + strand at 97.290 kb on + strand at 97.311 kb on + strand at 97.312 kb on - strand at 97.412 kb on + strand, within HMPREF1058_RS04195 at 97.479 kb on + strand, within HMPREF1058_RS04195 at 97.505 kb on + strand, within HMPREF1058_RS04195 at 97.529 kb on + strand, within HMPREF1058_RS04195 at 97.535 kb on - strand, within HMPREF1058_RS04195 at 97.535 kb on - strand, within HMPREF1058_RS04195 at 97.603 kb on + strand, within HMPREF1058_RS04195 at 97.626 kb on + strand, within HMPREF1058_RS04195 at 97.654 kb on - strand, within HMPREF1058_RS04195 at 97.842 kb on + strand, within HMPREF1058_RS04195 at 97.926 kb on + strand at 97.927 kb on - strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.932 kb on - strand at 97.932 kb on - strand at 97.936 kb on + strand at 97.994 kb on - strand at 98.335 kb on - strand, within HMPREF1058_RS04190 at 98.413 kb on - strand, within HMPREF1058_RS04190 at 98.500 kb on + strand, within HMPREF1058_RS04190 at 98.555 kb on + strand, within HMPREF1058_RS04190 at 98.559 kb on + strand, within HMPREF1058_RS04190 at 98.559 kb on + strand, within HMPREF1058_RS04190 at 98.623 kb on + strand at 98.623 kb on + strand at 98.646 kb on + strand at 98.661 kb on - strand at 98.710 kb on - strand at 98.751 kb on - strand at 98.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 96,334 + HMPREF1058_RS04200 0.59 +0.2 96,471 - HMPREF1058_RS04200 0.69 -0.8 96,520 + HMPREF1058_RS04200 0.72 -1.1 96,563 + HMPREF1058_RS04200 0.76 +0.2 96,586 + HMPREF1058_RS04200 0.77 -1.4 96,587 - HMPREF1058_RS04200 0.77 -0.2 96,599 - HMPREF1058_RS04200 0.78 -1.8 96,603 - HMPREF1058_RS04200 0.79 +4.3 96,606 + HMPREF1058_RS04200 0.79 -0.8 96,606 + HMPREF1058_RS04200 0.79 +4.7 96,607 - HMPREF1058_RS04200 0.79 -0.1 96,617 - HMPREF1058_RS04200 0.80 +2.4 96,678 - -0.8 96,700 + -0.8 96,700 + HMPREF1058_RS04200 0.86 +1.6 96,725 - HMPREF1058_RS04200 0.88 +2.0 96,729 - HMPREF1058_RS04200 0.88 -1.4 96,854 - -0.0 96,868 + +0.8 96,958 + -1.8 96,980 - -0.4 97,013 + -1.8 97,087 - +3.9 97,089 - +0.4 97,168 + +2.2 97,204 + -1.1 97,233 - -0.4 97,256 + +2.0 97,268 + -2.1 97,290 + -0.8 97,311 + +5.6 97,312 - +1.0 97,412 + HMPREF1058_RS04195 0.18 +1.2 97,479 + HMPREF1058_RS04195 0.28 +0.2 97,505 + HMPREF1058_RS04195 0.32 +2.2 97,529 + HMPREF1058_RS04195 0.36 -1.4 97,535 - HMPREF1058_RS04195 0.37 +1.1 97,535 - HMPREF1058_RS04195 0.37 +1.4 97,603 + HMPREF1058_RS04195 0.48 +0.1 97,626 + HMPREF1058_RS04195 0.51 +0.2 97,654 - HMPREF1058_RS04195 0.56 -0.4 97,842 + HMPREF1058_RS04195 0.85 +1.8 97,926 + +0.9 97,927 - +0.2 97,931 + -0.4 97,931 + -0.5 97,932 - -1.8 97,932 - +0.5 97,936 + +0.2 97,994 - -1.8 98,335 - HMPREF1058_RS04190 0.52 +0.2 98,413 - HMPREF1058_RS04190 0.64 +0.2 98,500 + HMPREF1058_RS04190 0.76 -2.6 98,555 + HMPREF1058_RS04190 0.84 -0.8 98,559 + HMPREF1058_RS04190 0.85 -0.8 98,559 + HMPREF1058_RS04190 0.85 +0.0 98,623 + +0.5 98,623 + +1.3 98,646 + +0.9 98,661 - +1.2 98,710 - +1.6 98,751 - -0.8 98,866 + -0.3
Or see this region's nucleotide sequence