Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02535 and HMPREF1058_RS02530 are separated by 46 nucleotides HMPREF1058_RS02530 and HMPREF1058_RS02525 are separated by 17 nucleotides
HMPREF1058_RS02535: HMPREF1058_RS02535 - imidazolonepropionase, at 160,254 to 161,498
_RS02535
HMPREF1058_RS02530: HMPREF1058_RS02530 - GxxExxY protein, at 161,545 to 161,931
_RS02530
HMPREF1058_RS02525: HMPREF1058_RS02525 - glutamate formimidoyltransferase, at 161,949 to 162,851
_RS02525
Position (kb) 161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 160.563 kb on + strand, within HMPREF1058_RS02535 at 160.612 kb on - strand, within HMPREF1058_RS02535 at 160.633 kb on - strand, within HMPREF1058_RS02535 at 160.656 kb on + strand, within HMPREF1058_RS02535 at 160.756 kb on - strand, within HMPREF1058_RS02535 at 160.794 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.909 kb on + strand, within HMPREF1058_RS02535 at 160.910 kb on - strand, within HMPREF1058_RS02535 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535 at 161.295 kb on + strand, within HMPREF1058_RS02535 at 161.295 kb on + strand, within HMPREF1058_RS02535 at 161.296 kb on - strand at 161.362 kb on + strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.366 kb on + strand, within HMPREF1058_RS02535 at 161.367 kb on - strand, within HMPREF1058_RS02535 at 161.369 kb on + strand, within HMPREF1058_RS02535 at 161.511 kb on + strand at 161.571 kb on + strand at 161.600 kb on - strand, within HMPREF1058_RS02530 at 161.608 kb on + strand, within HMPREF1058_RS02530 at 161.614 kb on + strand, within HMPREF1058_RS02530 at 161.693 kb on - strand, within HMPREF1058_RS02530 at 161.784 kb on + strand, within HMPREF1058_RS02530 at 161.785 kb on - strand, within HMPREF1058_RS02530 at 161.811 kb on - strand, within HMPREF1058_RS02530 at 161.811 kb on - strand, within HMPREF1058_RS02530 at 161.851 kb on + strand, within HMPREF1058_RS02530 at 161.862 kb on - strand, within HMPREF1058_RS02530 at 161.866 kb on + strand, within HMPREF1058_RS02530 at 161.882 kb on - strand, within HMPREF1058_RS02530 at 161.884 kb on + strand, within HMPREF1058_RS02530 at 161.893 kb on + strand at 161.894 kb on - strand at 161.911 kb on + strand at 161.940 kb on + strand at 161.940 kb on + strand at 161.945 kb on + strand at 161.946 kb on - strand at 161.946 kb on - strand at 161.946 kb on - strand at 161.951 kb on - strand at 162.008 kb on - strand at 162.010 kb on + strand at 162.259 kb on - strand, within HMPREF1058_RS02525 at 162.285 kb on + strand, within HMPREF1058_RS02525 at 162.285 kb on + strand, within HMPREF1058_RS02525 at 162.287 kb on + strand, within HMPREF1058_RS02525 at 162.293 kb on - strand, within HMPREF1058_RS02525 at 162.488 kb on + strand, within HMPREF1058_RS02525 at 162.488 kb on + strand, within HMPREF1058_RS02525 at 162.490 kb on + strand, within HMPREF1058_RS02525 at 162.548 kb on + strand, within HMPREF1058_RS02525 at 162.548 kb on + strand, within HMPREF1058_RS02525 at 162.577 kb on - strand, within HMPREF1058_RS02525 at 162.582 kb on + strand, within HMPREF1058_RS02525 at 162.582 kb on + strand, within HMPREF1058_RS02525 at 162.637 kb on - strand, within HMPREF1058_RS02525 at 162.643 kb on - strand, within HMPREF1058_RS02525 at 162.731 kb on + strand, within HMPREF1058_RS02525 at 162.731 kb on + strand, within HMPREF1058_RS02525 at 162.733 kb on + strand, within HMPREF1058_RS02525 at 162.851 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 160,563 + HMPREF1058_RS02535 0.25 -2.7 160,612 - HMPREF1058_RS02535 0.29 -0.1 160,633 - HMPREF1058_RS02535 0.30 -1.1 160,656 + HMPREF1058_RS02535 0.32 -0.5 160,756 - HMPREF1058_RS02535 0.40 +0.1 160,794 + HMPREF1058_RS02535 0.43 -1.8 160,909 + HMPREF1058_RS02535 0.53 +1.0 160,909 + HMPREF1058_RS02535 0.53 +1.5 160,909 + HMPREF1058_RS02535 0.53 +0.7 160,910 - HMPREF1058_RS02535 0.53 -2.4 161,201 + HMPREF1058_RS02535 0.76 -0.7 161,201 + HMPREF1058_RS02535 0.76 -1.3 161,202 - HMPREF1058_RS02535 0.76 -1.7 161,202 - HMPREF1058_RS02535 0.76 -0.5 161,203 + HMPREF1058_RS02535 0.76 +1.9 161,203 + HMPREF1058_RS02535 0.76 -0.7 161,204 - HMPREF1058_RS02535 0.76 -0.1 161,204 - HMPREF1058_RS02535 0.76 -2.7 161,295 + HMPREF1058_RS02535 0.84 +2.7 161,295 + HMPREF1058_RS02535 0.84 +0.9 161,296 - -1.7 161,362 + HMPREF1058_RS02535 0.89 +0.3 161,363 - HMPREF1058_RS02535 0.89 -1.7 161,363 - HMPREF1058_RS02535 0.89 +2.0 161,363 - HMPREF1058_RS02535 0.89 -2.1 161,366 + HMPREF1058_RS02535 0.89 +0.4 161,367 - HMPREF1058_RS02535 0.89 +0.5 161,369 + HMPREF1058_RS02535 0.90 +1.9 161,511 + +0.9 161,571 + +0.3 161,600 - HMPREF1058_RS02530 0.14 -1.7 161,608 + HMPREF1058_RS02530 0.16 +0.5 161,614 + HMPREF1058_RS02530 0.18 +1.6 161,693 - HMPREF1058_RS02530 0.38 +0.4 161,784 + HMPREF1058_RS02530 0.62 +1.7 161,785 - HMPREF1058_RS02530 0.62 -0.1 161,811 - HMPREF1058_RS02530 0.69 +2.2 161,811 - HMPREF1058_RS02530 0.69 +0.5 161,851 + HMPREF1058_RS02530 0.79 +0.8 161,862 - HMPREF1058_RS02530 0.82 +1.0 161,866 + HMPREF1058_RS02530 0.83 +1.1 161,882 - HMPREF1058_RS02530 0.87 +0.5 161,884 + HMPREF1058_RS02530 0.88 +1.7 161,893 + -0.5 161,894 - +3.2 161,911 + -2.7 161,940 + +1.3 161,940 + +1.5 161,945 + +3.2 161,946 - -0.1 161,946 - -2.4 161,946 - -0.1 161,951 - -1.3 162,008 - -2.7 162,010 + +2.2 162,259 - HMPREF1058_RS02525 0.34 -3.5 162,285 + HMPREF1058_RS02525 0.37 +0.8 162,285 + HMPREF1058_RS02525 0.37 +1.9 162,287 + HMPREF1058_RS02525 0.37 -1.6 162,293 - HMPREF1058_RS02525 0.38 -2.4 162,488 + HMPREF1058_RS02525 0.60 -0.1 162,488 + HMPREF1058_RS02525 0.60 +1.7 162,490 + HMPREF1058_RS02525 0.60 -0.8 162,548 + HMPREF1058_RS02525 0.66 +2.8 162,548 + HMPREF1058_RS02525 0.66 -0.9 162,577 - HMPREF1058_RS02525 0.70 +0.3 162,582 + HMPREF1058_RS02525 0.70 +1.4 162,582 + HMPREF1058_RS02525 0.70 +0.8 162,637 - HMPREF1058_RS02525 0.76 -0.9 162,643 - HMPREF1058_RS02525 0.77 -2.7 162,731 + HMPREF1058_RS02525 0.87 +0.4 162,731 + HMPREF1058_RS02525 0.87 +1.8 162,733 + HMPREF1058_RS02525 0.87 +0.4 162,851 + +1.3 162,870 + +4.1 162,870 + +0.5 162,873 - -1.3
Or see this region's nucleotide sequence