Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02480 and HMPREF1058_RS02475 are separated by 366 nucleotides HMPREF1058_RS02475 and HMPREF1058_RS02470 are separated by 78 nucleotides
HMPREF1058_RS02480: HMPREF1058_RS02480 - electron transfer flavoprotein subunit beta/FixA family protein, at 172,601 to 173,494
_RS02480
HMPREF1058_RS02475: HMPREF1058_RS02475 - hypothetical protein, at 173,861 to 174,119
_RS02475
HMPREF1058_RS02470: HMPREF1058_RS02470 - hypothetical protein, at 174,198 to 175,262
_RS02470
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 173.057 kb on - strand, within HMPREF1058_RS02480 at 173.168 kb on - strand, within HMPREF1058_RS02480 at 173.235 kb on + strand, within HMPREF1058_RS02480 at 173.236 kb on - strand, within HMPREF1058_RS02480 at 173.238 kb on - strand, within HMPREF1058_RS02480 at 173.475 kb on - strand at 173.477 kb on + strand at 173.496 kb on + strand at 173.497 kb on - strand at 173.507 kb on - strand at 173.516 kb on + strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.580 kb on + strand at 173.634 kb on - strand at 173.643 kb on - strand at 173.655 kb on - strand at 173.710 kb on + strand at 173.807 kb on + strand at 173.837 kb on - strand at 173.925 kb on - strand, within HMPREF1058_RS02475 at 173.959 kb on - strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.005 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.043 kb on - strand, within HMPREF1058_RS02475 at 174.062 kb on + strand, within HMPREF1058_RS02475 at 174.129 kb on + strand at 174.130 kb on - strand at 174.157 kb on - strand at 174.159 kb on + strand at 174.198 kb on - strand at 174.261 kb on - strand at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand at 174.330 kb on - strand, within HMPREF1058_RS02470 at 174.393 kb on - strand, within HMPREF1058_RS02470 at 174.411 kb on - strand, within HMPREF1058_RS02470 at 174.453 kb on - strand, within HMPREF1058_RS02470 at 174.527 kb on + strand, within HMPREF1058_RS02470 at 174.532 kb on + strand, within HMPREF1058_RS02470 at 174.554 kb on + strand, within HMPREF1058_RS02470 at 174.554 kb on + strand, within HMPREF1058_RS02470 at 174.555 kb on - strand, within HMPREF1058_RS02470 at 174.567 kb on + strand, within HMPREF1058_RS02470 at 174.672 kb on + strand, within HMPREF1058_RS02470 at 174.674 kb on + strand, within HMPREF1058_RS02470 at 174.674 kb on + strand, within HMPREF1058_RS02470 at 174.742 kb on + strand, within HMPREF1058_RS02470 at 174.743 kb on - strand, within HMPREF1058_RS02470 at 174.852 kb on - strand, within HMPREF1058_RS02470 at 174.881 kb on + strand, within HMPREF1058_RS02470 at 174.948 kb on + strand, within HMPREF1058_RS02470 at 175.018 kb on - strand, within HMPREF1058_RS02470 at 175.032 kb on + strand, within HMPREF1058_RS02470 at 175.033 kb on - strand, within HMPREF1058_RS02470 at 175.034 kb on + strand, within HMPREF1058_RS02470 at 175.045 kb on + strand, within HMPREF1058_RS02470 at 175.046 kb on - strand, within HMPREF1058_RS02470 at 175.069 kb on - strand, within HMPREF1058_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 173,057 - HMPREF1058_RS02480 0.51 -0.1 173,168 - HMPREF1058_RS02480 0.63 -4.5 173,235 + HMPREF1058_RS02480 0.71 -2.4 173,236 - HMPREF1058_RS02480 0.71 -0.1 173,238 - HMPREF1058_RS02480 0.71 -1.7 173,475 - -4.0 173,477 + -2.9 173,496 + -1.1 173,497 - -1.1 173,507 - -1.1 173,516 + -1.1 173,517 - +0.1 173,517 - +1.0 173,517 - +2.0 173,580 + -0.6 173,634 - +0.6 173,643 - -0.1 173,655 - +0.2 173,710 + +1.4 173,807 + +1.2 173,837 - -1.1 173,925 - HMPREF1058_RS02475 0.25 +3.7 173,959 - HMPREF1058_RS02475 0.38 -0.3 174,004 + HMPREF1058_RS02475 0.55 +0.5 174,004 + HMPREF1058_RS02475 0.55 -0.1 174,005 - HMPREF1058_RS02475 0.56 -0.7 174,009 - HMPREF1058_RS02475 0.57 -2.7 174,009 - HMPREF1058_RS02475 0.57 -3.4 174,043 - HMPREF1058_RS02475 0.70 -0.5 174,062 + HMPREF1058_RS02475 0.78 +0.5 174,129 + +3.6 174,130 - +0.7 174,157 - +0.9 174,159 + -3.7 174,198 - -1.3 174,261 - +0.2 174,313 - HMPREF1058_RS02470 0.11 +4.8 174,313 - HMPREF1058_RS02470 0.11 +0.8 174,313 - -0.1 174,330 - HMPREF1058_RS02470 0.12 -0.1 174,393 - HMPREF1058_RS02470 0.18 +0.5 174,411 - HMPREF1058_RS02470 0.20 +0.3 174,453 - HMPREF1058_RS02470 0.24 +0.2 174,527 + HMPREF1058_RS02470 0.31 +4.0 174,532 + HMPREF1058_RS02470 0.31 +2.8 174,554 + HMPREF1058_RS02470 0.33 -0.4 174,554 + HMPREF1058_RS02470 0.33 +0.1 174,555 - HMPREF1058_RS02470 0.34 +0.9 174,567 + HMPREF1058_RS02470 0.35 -1.4 174,672 + HMPREF1058_RS02470 0.45 +0.5 174,674 + HMPREF1058_RS02470 0.45 +3.2 174,674 + HMPREF1058_RS02470 0.45 +0.7 174,742 + HMPREF1058_RS02470 0.51 -2.5 174,743 - HMPREF1058_RS02470 0.51 -1.7 174,852 - HMPREF1058_RS02470 0.61 -1.4 174,881 + HMPREF1058_RS02470 0.64 +0.3 174,948 + HMPREF1058_RS02470 0.70 -0.0 175,018 - HMPREF1058_RS02470 0.77 -1.0 175,032 + HMPREF1058_RS02470 0.78 +0.6 175,033 - HMPREF1058_RS02470 0.78 +0.5 175,034 + HMPREF1058_RS02470 0.78 -0.8 175,045 + HMPREF1058_RS02470 0.80 -0.2 175,046 - HMPREF1058_RS02470 0.80 +3.2 175,069 - HMPREF1058_RS02470 0.82 -2.4
Or see this region's nucleotide sequence