Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02325 and HMPREF1058_RS02320 overlap by 23 nucleotides HMPREF1058_RS02320 and HMPREF1058_RS02315 are separated by 48 nucleotides
HMPREF1058_RS02325: HMPREF1058_RS02325 - radical SAM protein, at 226,662 to 228,173
_RS02325
HMPREF1058_RS02320: HMPREF1058_RS02320 - hypothetical protein, at 228,151 to 228,354
_RS02320
HMPREF1058_RS02315: HMPREF1058_RS02315 - HlyD family efflux transporter periplasmic adaptor subunit, at 228,403 to 229,548
_RS02315
Position (kb) 228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 227.221 kb on - strand, within HMPREF1058_RS02325 at 227.221 kb on - strand, within HMPREF1058_RS02325 at 227.331 kb on + strand, within HMPREF1058_RS02325 at 227.356 kb on + strand, within HMPREF1058_RS02325 at 227.524 kb on - strand, within HMPREF1058_RS02325 at 227.672 kb on + strand, within HMPREF1058_RS02325 at 227.672 kb on + strand, within HMPREF1058_RS02325 at 227.673 kb on - strand, within HMPREF1058_RS02325 at 227.673 kb on - strand, within HMPREF1058_RS02325 at 227.686 kb on + strand, within HMPREF1058_RS02325 at 227.686 kb on + strand, within HMPREF1058_RS02325 at 227.686 kb on + strand, within HMPREF1058_RS02325 at 227.687 kb on - strand, within HMPREF1058_RS02325 at 227.690 kb on + strand, within HMPREF1058_RS02325 at 227.691 kb on - strand, within HMPREF1058_RS02325 at 227.691 kb on - strand, within HMPREF1058_RS02325 at 227.759 kb on + strand, within HMPREF1058_RS02325 at 227.847 kb on + strand, within HMPREF1058_RS02325 at 227.847 kb on + strand, within HMPREF1058_RS02325 at 227.890 kb on + strand, within HMPREF1058_RS02325 at 227.891 kb on - strand, within HMPREF1058_RS02325 at 228.041 kb on + strand at 228.128 kb on - strand at 228.145 kb on + strand at 228.147 kb on + strand at 228.147 kb on + strand at 228.148 kb on - strand at 228.148 kb on - strand at 228.148 kb on - strand at 228.148 kb on - strand at 228.209 kb on + strand, within HMPREF1058_RS02320 at 228.248 kb on - strand, within HMPREF1058_RS02320 at 228.260 kb on - strand, within HMPREF1058_RS02320 at 228.260 kb on - strand, within HMPREF1058_RS02320 at 228.260 kb on - strand, within HMPREF1058_RS02320 at 228.260 kb on - strand, within HMPREF1058_RS02320 at 228.317 kb on + strand, within HMPREF1058_RS02320 at 228.369 kb on - strand at 228.429 kb on - strand at 228.455 kb on - strand at 228.499 kb on + strand at 228.506 kb on + strand at 228.512 kb on - strand at 228.574 kb on - strand, within HMPREF1058_RS02315 at 228.574 kb on - strand, within HMPREF1058_RS02315 at 228.616 kb on + strand, within HMPREF1058_RS02315 at 228.638 kb on + strand, within HMPREF1058_RS02315 at 228.659 kb on - strand, within HMPREF1058_RS02315 at 228.837 kb on - strand, within HMPREF1058_RS02315 at 228.929 kb on - strand, within HMPREF1058_RS02315 at 229.040 kb on + strand, within HMPREF1058_RS02315 at 229.059 kb on - strand, within HMPREF1058_RS02315 at 229.059 kb on - strand, within HMPREF1058_RS02315 at 229.072 kb on - strand, within HMPREF1058_RS02315 at 229.136 kb on + strand, within HMPREF1058_RS02315 at 229.180 kb on + strand, within HMPREF1058_RS02315 at 229.210 kb on + strand, within HMPREF1058_RS02315 at 229.240 kb on + strand, within HMPREF1058_RS02315 at 229.264 kb on + strand, within HMPREF1058_RS02315 at 229.298 kb on - strand, within HMPREF1058_RS02315
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 227,221 - HMPREF1058_RS02325 0.37 +0.9 227,221 - HMPREF1058_RS02325 0.37 +0.7 227,331 + HMPREF1058_RS02325 0.44 +0.9 227,356 + HMPREF1058_RS02325 0.46 -0.1 227,524 - HMPREF1058_RS02325 0.57 +0.2 227,672 + HMPREF1058_RS02325 0.67 -1.1 227,672 + HMPREF1058_RS02325 0.67 +1.2 227,673 - HMPREF1058_RS02325 0.67 -1.2 227,673 - HMPREF1058_RS02325 0.67 +0.8 227,686 + HMPREF1058_RS02325 0.68 +0.4 227,686 + HMPREF1058_RS02325 0.68 -0.1 227,686 + HMPREF1058_RS02325 0.68 +0.7 227,687 - HMPREF1058_RS02325 0.68 -0.1 227,690 + HMPREF1058_RS02325 0.68 +1.9 227,691 - HMPREF1058_RS02325 0.68 +0.7 227,691 - HMPREF1058_RS02325 0.68 +1.0 227,759 + HMPREF1058_RS02325 0.73 +1.1 227,847 + HMPREF1058_RS02325 0.78 +0.5 227,847 + HMPREF1058_RS02325 0.78 -1.7 227,890 + HMPREF1058_RS02325 0.81 +0.2 227,891 - HMPREF1058_RS02325 0.81 +2.2 228,041 + +0.5 228,128 - +3.2 228,145 + -0.4 228,147 + -2.4 228,147 + +0.3 228,148 - +0.8 228,148 - +1.5 228,148 - +1.2 228,148 - -0.1 228,209 + HMPREF1058_RS02320 0.28 +2.0 228,248 - HMPREF1058_RS02320 0.48 +0.7 228,260 - HMPREF1058_RS02320 0.53 -1.6 228,260 - HMPREF1058_RS02320 0.53 -1.1 228,260 - HMPREF1058_RS02320 0.53 -1.1 228,260 - HMPREF1058_RS02320 0.53 +3.7 228,317 + HMPREF1058_RS02320 0.81 +1.5 228,369 - +1.7 228,429 - -0.3 228,455 - -1.5 228,499 + +1.5 228,506 + -1.1 228,512 - +0.2 228,574 - HMPREF1058_RS02315 0.15 -0.7 228,574 - HMPREF1058_RS02315 0.15 -0.7 228,616 + HMPREF1058_RS02315 0.19 +0.5 228,638 + HMPREF1058_RS02315 0.21 +2.1 228,659 - HMPREF1058_RS02315 0.22 -2.1 228,837 - HMPREF1058_RS02315 0.38 +0.2 228,929 - HMPREF1058_RS02315 0.46 +0.0 229,040 + HMPREF1058_RS02315 0.56 -0.5 229,059 - HMPREF1058_RS02315 0.57 +0.8 229,059 - HMPREF1058_RS02315 0.57 -0.1 229,072 - HMPREF1058_RS02315 0.58 -0.1 229,136 + HMPREF1058_RS02315 0.64 +0.9 229,180 + HMPREF1058_RS02315 0.68 -0.5 229,210 + HMPREF1058_RS02315 0.70 -2.7 229,240 + HMPREF1058_RS02315 0.73 -0.1 229,264 + HMPREF1058_RS02315 0.75 +2.8 229,298 - HMPREF1058_RS02315 0.78 +0.4
Or see this region's nucleotide sequence