Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01210 and HMPREF1058_RS01205 are separated by 181 nucleotides HMPREF1058_RS01205 and HMPREF1058_RS01200 are separated by 80 nucleotides
HMPREF1058_RS01210: HMPREF1058_RS01210 - endopeptidase La, at 178,669 to 181,146
_RS01210
HMPREF1058_RS01205: HMPREF1058_RS01205 - methyltransferase, at 181,328 to 182,032
_RS01205
HMPREF1058_RS01200: HMPREF1058_RS01200 - diacylglycerol kinase family lipid kinase, at 182,113 to 183,147
_RS01200
Position (kb) 181
182
183 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.883 kb on - strand, within HMPREF1058_RS01210 at 180.930 kb on - strand at 180.986 kb on - strand at 181.090 kb on - strand at 181.090 kb on - strand at 181.270 kb on + strand at 181.283 kb on + strand at 181.322 kb on + strand at 181.323 kb on - strand at 181.324 kb on + strand at 181.325 kb on - strand at 181.325 kb on - strand at 181.367 kb on + strand at 181.668 kb on - strand, within HMPREF1058_RS01205 at 181.746 kb on + strand, within HMPREF1058_RS01205 at 181.799 kb on - strand, within HMPREF1058_RS01205 at 181.985 kb on - strand at 181.985 kb on - strand at 181.996 kb on + strand at 181.997 kb on - strand at 181.998 kb on + strand at 181.998 kb on + strand at 182.151 kb on + strand at 182.215 kb on + strand at 182.266 kb on - strand, within HMPREF1058_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 180,471 - HMPREF1058_RS01210 0.73 +0.2 180,471 - HMPREF1058_RS01210 0.73 -2.2 180,471 - HMPREF1058_RS01210 0.73 -1.4 180,471 - HMPREF1058_RS01210 0.73 -1.8 180,471 - HMPREF1058_RS01210 0.73 -1.7 180,471 - -0.8 180,791 - HMPREF1058_RS01210 0.86 -2.2 180,791 - HMPREF1058_RS01210 0.86 -1.4 180,791 - HMPREF1058_RS01210 0.86 -1.4 180,848 - HMPREF1058_RS01210 0.88 -0.7 180,848 - HMPREF1058_RS01210 0.88 -0.4 180,855 - HMPREF1058_RS01210 0.88 -1.0 180,855 - HMPREF1058_RS01210 0.88 -3.2 180,883 - HMPREF1058_RS01210 0.89 +0.2 180,930 - -4.3 180,986 - -2.4 181,090 - -4.3 181,090 - -0.8 181,270 + -0.6 181,283 + -0.8 181,322 + -2.7 181,323 - +0.2 181,324 + -1.4 181,325 - -1.4 181,325 - +0.2 181,367 + +3.7 181,668 - HMPREF1058_RS01205 0.48 +4.1 181,746 + HMPREF1058_RS01205 0.59 -1.1 181,799 - HMPREF1058_RS01205 0.67 +0.2 181,985 - +1.5 181,985 - +2.0 181,996 + -1.3 181,997 - +2.5 181,998 + -1.6 181,998 + +1.7 182,151 + -1.6 182,215 + -1.4 182,266 - HMPREF1058_RS01200 0.15 +0.2
Or see this region's nucleotide sequence