Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02220 and HMPREF1058_RS0120025 are separated by 17 nucleotides HMPREF1058_RS0120025 and HMPREF1058_RS02215 are separated by 122 nucleotides HMPREF1058_RS02215 and HMPREF1058_RS02210 are separated by 10 nucleotides
HMPREF1058_RS02220: HMPREF1058_RS02220 - branched-chain amino acid aminotransferase, at 254,373 to 255,392
_RS02220
HMPREF1058_RS0120025: HMPREF1058_RS0120025 - DUF975 family protein, at 255,410 to 256,035
_RS0120025
HMPREF1058_RS02215: HMPREF1058_RS02215 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 256,158 to 256,916
_RS02215
HMPREF1058_RS02210: HMPREF1058_RS02210 - Mrp/NBP35 family ATP-binding protein, at 256,927 to 258,027
_RS02210
Position (kb) 255
256
257 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 254.410 kb on - strand at 254.424 kb on + strand at 254.425 kb on - strand at 254.425 kb on - strand at 254.426 kb on + strand at 254.431 kb on + strand at 254.431 kb on + strand at 254.431 kb on + strand at 254.431 kb on + strand at 254.573 kb on + strand, within HMPREF1058_RS02220 at 254.622 kb on - strand, within HMPREF1058_RS02220 at 254.740 kb on - strand at 254.763 kb on - strand, within HMPREF1058_RS02220 at 254.800 kb on - strand, within HMPREF1058_RS02220 at 254.870 kb on + strand, within HMPREF1058_RS02220 at 254.935 kb on - strand, within HMPREF1058_RS02220 at 254.935 kb on - strand, within HMPREF1058_RS02220 at 254.994 kb on + strand, within HMPREF1058_RS02220 at 255.041 kb on + strand, within HMPREF1058_RS02220 at 255.069 kb on + strand, within HMPREF1058_RS02220 at 255.105 kb on - strand, within HMPREF1058_RS02220 at 255.105 kb on - strand, within HMPREF1058_RS02220 at 255.278 kb on + strand, within HMPREF1058_RS02220 at 255.285 kb on - strand, within HMPREF1058_RS02220 at 255.339 kb on - strand at 255.345 kb on + strand at 255.362 kb on + strand at 255.362 kb on + strand at 255.369 kb on - strand at 255.386 kb on - strand at 255.393 kb on + strand at 255.402 kb on - strand at 255.484 kb on + strand, within HMPREF1058_RS0120025 at 255.635 kb on + strand, within HMPREF1058_RS0120025 at 255.669 kb on + strand, within HMPREF1058_RS0120025 at 255.693 kb on + strand, within HMPREF1058_RS0120025 at 255.715 kb on + strand, within HMPREF1058_RS0120025 at 255.716 kb on - strand, within HMPREF1058_RS0120025 at 255.716 kb on - strand, within HMPREF1058_RS0120025 at 255.717 kb on + strand, within HMPREF1058_RS0120025 at 255.717 kb on + strand, within HMPREF1058_RS0120025 at 255.766 kb on + strand, within HMPREF1058_RS0120025 at 255.830 kb on + strand, within HMPREF1058_RS0120025 at 255.956 kb on - strand, within HMPREF1058_RS0120025 at 255.956 kb on - strand, within HMPREF1058_RS0120025 at 255.960 kb on - strand, within HMPREF1058_RS0120025 at 255.960 kb on - strand, within HMPREF1058_RS0120025 at 255.960 kb on - strand, within HMPREF1058_RS0120025 at 255.960 kb on - strand, within HMPREF1058_RS0120025 at 255.983 kb on - strand at 256.034 kb on - strand at 256.036 kb on + strand at 256.037 kb on - strand at 256.039 kb on - strand at 256.039 kb on - strand at 256.145 kb on + strand at 256.191 kb on - strand at 256.218 kb on + strand at 256.244 kb on + strand, within HMPREF1058_RS02215 at 256.244 kb on + strand, within HMPREF1058_RS02215 at 256.335 kb on - strand, within HMPREF1058_RS02215 at 256.352 kb on + strand, within HMPREF1058_RS02215 at 256.352 kb on + strand, within HMPREF1058_RS02215 at 256.352 kb on + strand, within HMPREF1058_RS02215 at 256.382 kb on - strand, within HMPREF1058_RS02215 at 256.385 kb on + strand, within HMPREF1058_RS02215 at 256.514 kb on - strand, within HMPREF1058_RS02215 at 256.663 kb on - strand, within HMPREF1058_RS02215 at 256.665 kb on - strand, within HMPREF1058_RS02215 at 256.697 kb on + strand, within HMPREF1058_RS02215 at 256.698 kb on - strand, within HMPREF1058_RS02215 at 256.698 kb on - strand, within HMPREF1058_RS02215 at 256.738 kb on + strand, within HMPREF1058_RS02215 at 256.739 kb on - strand, within HMPREF1058_RS02215 at 256.739 kb on - strand, within HMPREF1058_RS02215 at 256.739 kb on - strand, within HMPREF1058_RS02215 at 256.742 kb on - strand, within HMPREF1058_RS02215 at 256.755 kb on + strand, within HMPREF1058_RS02215 at 256.756 kb on - strand, within HMPREF1058_RS02215 at 256.797 kb on + strand, within HMPREF1058_RS02215 at 256.799 kb on + strand, within HMPREF1058_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 254,410 - -3.9 254,424 + -3.5 254,425 - -1.1 254,425 - -2.7 254,426 + -2.1 254,431 + -2.5 254,431 + -3.1 254,431 + -2.1 254,431 + -3.4 254,573 + HMPREF1058_RS02220 0.20 -0.5 254,622 - HMPREF1058_RS02220 0.24 -3.1 254,740 - -1.7 254,763 - HMPREF1058_RS02220 0.38 -2.1 254,800 - HMPREF1058_RS02220 0.42 -0.1 254,870 + HMPREF1058_RS02220 0.49 -2.4 254,935 - HMPREF1058_RS02220 0.55 -3.3 254,935 - HMPREF1058_RS02220 0.55 -2.4 254,994 + HMPREF1058_RS02220 0.61 -0.1 255,041 + HMPREF1058_RS02220 0.65 -0.1 255,069 + HMPREF1058_RS02220 0.68 -1.7 255,105 - HMPREF1058_RS02220 0.72 -1.1 255,105 - HMPREF1058_RS02220 0.72 -1.1 255,278 + HMPREF1058_RS02220 0.89 -3.4 255,285 - HMPREF1058_RS02220 0.89 -2.7 255,339 - -2.7 255,345 + -1.1 255,362 + -2.1 255,362 + -3.4 255,369 - -1.1 255,386 - -1.7 255,393 + -0.4 255,402 - +0.5 255,484 + HMPREF1058_RS0120025 0.12 -2.0 255,635 + HMPREF1058_RS0120025 0.36 +3.1 255,669 + HMPREF1058_RS0120025 0.41 -0.9 255,693 + HMPREF1058_RS0120025 0.45 +0.8 255,715 + HMPREF1058_RS0120025 0.49 -0.4 255,716 - HMPREF1058_RS0120025 0.49 +1.1 255,716 - HMPREF1058_RS0120025 0.49 +4.1 255,717 + HMPREF1058_RS0120025 0.49 +0.8 255,717 + HMPREF1058_RS0120025 0.49 -3.8 255,766 + HMPREF1058_RS0120025 0.57 +1.2 255,830 + HMPREF1058_RS0120025 0.67 +0.8 255,956 - HMPREF1058_RS0120025 0.87 +1.2 255,956 - HMPREF1058_RS0120025 0.87 -1.1 255,960 - HMPREF1058_RS0120025 0.88 +0.9 255,960 - HMPREF1058_RS0120025 0.88 +1.2 255,960 - HMPREF1058_RS0120025 0.88 +4.7 255,960 - HMPREF1058_RS0120025 0.88 -1.1 255,983 - +0.3 256,034 - -2.4 256,036 + +1.8 256,037 - +1.3 256,039 - +1.7 256,039 - +0.8 256,145 + +1.7 256,191 - -4.3 256,218 + -0.8 256,244 + HMPREF1058_RS02215 0.11 -0.1 256,244 + HMPREF1058_RS02215 0.11 -1.6 256,335 - HMPREF1058_RS02215 0.23 -2.4 256,352 + HMPREF1058_RS02215 0.26 -0.4 256,352 + HMPREF1058_RS02215 0.26 -0.6 256,352 + HMPREF1058_RS02215 0.26 +1.2 256,382 - HMPREF1058_RS02215 0.30 -3.5 256,385 + HMPREF1058_RS02215 0.30 +0.3 256,514 - HMPREF1058_RS02215 0.47 -0.1 256,663 - HMPREF1058_RS02215 0.67 -1.7 256,665 - HMPREF1058_RS02215 0.67 -3.1 256,697 + HMPREF1058_RS02215 0.71 -0.1 256,698 - HMPREF1058_RS02215 0.71 -4.6 256,698 - HMPREF1058_RS02215 0.71 -4.1 256,738 + HMPREF1058_RS02215 0.76 +1.2 256,739 - HMPREF1058_RS02215 0.77 -3.3 256,739 - HMPREF1058_RS02215 0.77 -1.7 256,739 - HMPREF1058_RS02215 0.77 -5.3 256,742 - HMPREF1058_RS02215 0.77 -1.7 256,755 + HMPREF1058_RS02215 0.79 +0.2 256,756 - HMPREF1058_RS02215 0.79 -0.1 256,797 + HMPREF1058_RS02215 0.84 -1.1 256,799 + HMPREF1058_RS02215 0.84 +1.1
Or see this region's nucleotide sequence