Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01115

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01115 and HMPREF1058_RS01110 are separated by 59 nucleotides HMPREF1058_RS01115: HMPREF1058_RS01115 - hypothetical protein, at 207,357 to 207,761 _RS01115 HMPREF1058_RS01110: HMPREF1058_RS01110 - IS256 family transposase, at 207,821 to 209,035 _RS01110 Position (kb) 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 206.376 kb on - strandat 206.462 kb on + strandat 206.524 kb on + strandat 206.559 kb on + strandat 206.593 kb on + strandat 206.620 kb on - strandat 206.670 kb on + strandat 206.671 kb on - strandat 206.678 kb on - strandat 206.696 kb on - strandat 206.738 kb on + strandat 206.738 kb on + strandat 206.739 kb on - strandat 206.739 kb on - strandat 206.760 kb on + strandat 206.828 kb on + strandat 206.894 kb on + strandat 206.995 kb on + strandat 207.018 kb on - strandat 207.061 kb on - strandat 207.061 kb on - strandat 207.074 kb on - strandat 207.139 kb on - strandat 207.141 kb on - strandat 207.253 kb on + strandat 207.289 kb on + strandat 207.312 kb on - strandat 207.376 kb on + strandat 207.380 kb on + strandat 207.395 kb on - strandat 207.395 kb on - strandat 207.460 kb on - strand, within HMPREF1058_RS01115at 207.463 kb on - strand, within HMPREF1058_RS01115at 207.466 kb on + strand, within HMPREF1058_RS01115at 207.466 kb on + strand, within HMPREF1058_RS01115at 207.467 kb on - strand, within HMPREF1058_RS01115at 207.474 kb on + strand, within HMPREF1058_RS01115at 207.516 kb on + strand, within HMPREF1058_RS01115at 207.516 kb on + strand, within HMPREF1058_RS01115at 207.516 kb on + strand, within HMPREF1058_RS01115at 207.563 kb on - strand, within HMPREF1058_RS01115at 207.563 kb on - strand, within HMPREF1058_RS01115at 207.639 kb on + strand, within HMPREF1058_RS01115at 207.639 kb on + strand, within HMPREF1058_RS01115at 207.661 kb on - strand, within HMPREF1058_RS01115at 207.931 kb on + strandat 208.169 kb on - strand, within HMPREF1058_RS01110at 208.232 kb on - strand, within HMPREF1058_RS01110at 208.257 kb on + strand, within HMPREF1058_RS01110at 208.335 kb on - strand, within HMPREF1058_RS01110at 208.336 kb on + strand, within HMPREF1058_RS01110at 208.380 kb on - strand, within HMPREF1058_RS01110at 208.380 kb on - strand, within HMPREF1058_RS01110at 208.411 kb on + strand, within HMPREF1058_RS01110at 208.412 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.433 kb on - strand, within HMPREF1058_RS01110at 208.434 kb on + strand, within HMPREF1058_RS01110at 208.435 kb on - strand, within HMPREF1058_RS01110at 208.505 kb on - strand, within HMPREF1058_RS01110at 208.510 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.520 kb on - strand, within HMPREF1058_RS01110at 208.520 kb on - strand, within HMPREF1058_RS01110at 208.594 kb on - strand, within HMPREF1058_RS01110at 208.619 kb on + strand, within HMPREF1058_RS01110at 208.620 kb on - strand, within HMPREF1058_RS01110

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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206,376 - -0.3
206,462 + +0.6
206,524 + +0.7
206,559 + +0.4
206,593 + +0.2
206,620 - +0.2
206,670 + +2.9
206,671 - -1.8
206,678 - -2.7
206,696 - +0.2
206,738 + -3.0
206,738 + +0.2
206,739 - +0.9
206,739 - +0.6
206,760 + -0.5
206,828 + +0.3
206,894 + -1.6
206,995 + -0.7
207,018 - -1.4
207,061 - +0.4
207,061 - -0.7
207,074 - -0.8
207,139 - -0.8
207,141 - -2.2
207,253 + -1.4
207,289 + -1.8
207,312 - -1.4
207,376 + +0.3
207,380 + -1.8
207,395 - +0.2
207,395 - -0.8
207,460 - HMPREF1058_RS01115 0.25 -0.3
207,463 - HMPREF1058_RS01115 0.26 -1.8
207,466 + HMPREF1058_RS01115 0.27 -2.3
207,466 + HMPREF1058_RS01115 0.27 -2.7
207,467 - HMPREF1058_RS01115 0.27 +0.7
207,474 + HMPREF1058_RS01115 0.29 +0.7
207,516 + HMPREF1058_RS01115 0.39 -0.3
207,516 + HMPREF1058_RS01115 0.39 +1.4
207,516 + HMPREF1058_RS01115 0.39 +0.2
207,563 - HMPREF1058_RS01115 0.51 -1.4
207,563 - HMPREF1058_RS01115 0.51 -0.5
207,639 + HMPREF1058_RS01115 0.70 +0.2
207,639 + HMPREF1058_RS01115 0.70 +4.3
207,661 - HMPREF1058_RS01115 0.75 +1.6
207,931 + +0.7
208,169 - HMPREF1058_RS01110 0.29 -1.4
208,232 - HMPREF1058_RS01110 0.34 +0.2
208,257 + HMPREF1058_RS01110 0.36 -1.4
208,335 - HMPREF1058_RS01110 0.42 +0.2
208,336 + HMPREF1058_RS01110 0.42 +1.2
208,380 - HMPREF1058_RS01110 0.46 +0.7
208,380 - HMPREF1058_RS01110 0.46 -1.3
208,411 + HMPREF1058_RS01110 0.49 -2.4
208,412 - HMPREF1058_RS01110 0.49 -1.4
208,431 - HMPREF1058_RS01110 0.50 +0.0
208,431 - HMPREF1058_RS01110 0.50 -1.4
208,431 - HMPREF1058_RS01110 0.50 +0.2
208,433 - HMPREF1058_RS01110 0.50 +0.7
208,434 + HMPREF1058_RS01110 0.50 +0.8
208,435 - HMPREF1058_RS01110 0.51 -2.2
208,505 - HMPREF1058_RS01110 0.56 -0.8
208,510 + HMPREF1058_RS01110 0.57 +0.2
208,519 + HMPREF1058_RS01110 0.57 -0.7
208,519 + HMPREF1058_RS01110 0.57 -1.4
208,519 + HMPREF1058_RS01110 0.57 +0.4
208,520 - HMPREF1058_RS01110 0.58 -1.5
208,520 - HMPREF1058_RS01110 0.58 -1.7
208,594 - HMPREF1058_RS01110 0.64 -2.4
208,619 + HMPREF1058_RS01110 0.66 -0.3
208,620 - HMPREF1058_RS01110 0.66 +1.6

Or see this region's nucleotide sequence