Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01085 and HMPREF1058_RS01080 are separated by 73 nucleotides HMPREF1058_RS01080 and HMPREF1058_RS01075 are separated by 205 nucleotides HMPREF1058_RS01075 and HMPREF1058_RS01065 are separated by 653 nucleotides
HMPREF1058_RS01085: HMPREF1058_RS01085 - DUF134 domain-containing protein, at 214,405 to 215,214
_RS01085
HMPREF1058_RS01080: HMPREF1058_RS01080 - hypothetical protein, at 215,288 to 215,593
_RS01080
HMPREF1058_RS01075: HMPREF1058_RS01075 - site-specific integrase, at 215,799 to 217,013
_RS01075
HMPREF1058_RS01065: HMPREF1058_RS01065 - hypothetical protein, at 217,667 to 218,284
_RS01065
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 214.907 kb on - strand, within HMPREF1058_RS01085 at 214.908 kb on + strand, within HMPREF1058_RS01085 at 214.995 kb on - strand, within HMPREF1058_RS01085 at 215.014 kb on - strand, within HMPREF1058_RS01085 at 215.071 kb on - strand, within HMPREF1058_RS01085 at 215.205 kb on + strand at 215.206 kb on - strand at 215.206 kb on - strand at 215.223 kb on - strand at 215.230 kb on - strand at 215.622 kb on + strand at 215.870 kb on - strand at 216.248 kb on + strand, within HMPREF1058_RS01075 at 216.248 kb on + strand, within HMPREF1058_RS01075 at 216.274 kb on - strand, within HMPREF1058_RS01075 at 216.274 kb on - strand, within HMPREF1058_RS01075 at 217.144 kb on + strand at 217.145 kb on - strand at 217.145 kb on - strand at 217.165 kb on + strand at 217.170 kb on - strand at 217.321 kb on - strand at 217.323 kb on + strand at 217.323 kb on + strand at 217.358 kb on - strand at 217.360 kb on - strand at 217.453 kb on - strand at 217.563 kb on + strand at 217.603 kb on - strand at 217.603 kb on - strand at 217.606 kb on - strand at 217.634 kb on - strand at 217.643 kb on + strand at 217.643 kb on + strand at 217.644 kb on - strand at 217.679 kb on - strand at 217.691 kb on - strand at 217.693 kb on + strand at 217.740 kb on - strand, within HMPREF1058_RS01065 at 217.854 kb on + strand, within HMPREF1058_RS01065 at 217.882 kb on - strand, within HMPREF1058_RS01065 at 217.884 kb on - strand, within HMPREF1058_RS01065 at 217.913 kb on - strand, within HMPREF1058_RS01065 at 217.914 kb on + strand, within HMPREF1058_RS01065 at 217.914 kb on + strand, within HMPREF1058_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 214,907 - HMPREF1058_RS01085 0.62 -2.4 214,908 + HMPREF1058_RS01085 0.62 +0.2 214,995 - HMPREF1058_RS01085 0.73 -0.1 215,014 - HMPREF1058_RS01085 0.75 +2.4 215,071 - HMPREF1058_RS01085 0.82 -0.8 215,205 + -0.2 215,206 - -0.3 215,206 - -0.8 215,223 - -2.8 215,230 - -1.8 215,622 + -0.3 215,870 - +1.2 216,248 + HMPREF1058_RS01075 0.37 -1.4 216,248 + HMPREF1058_RS01075 0.37 +2.0 216,274 - HMPREF1058_RS01075 0.39 +3.0 216,274 - HMPREF1058_RS01075 0.39 +2.1 217,144 + +0.2 217,145 - -1.1 217,145 - -0.3 217,165 + +0.2 217,170 - -2.3 217,321 - +0.7 217,323 + +0.2 217,323 + -1.4 217,358 - -3.8 217,360 - -1.4 217,453 - +0.6 217,563 + +0.2 217,603 - -0.7 217,603 - +0.5 217,606 - +1.3 217,634 - -1.4 217,643 + -4.2 217,643 + -3.2 217,644 - -0.8 217,679 - +1.2 217,691 - -0.1 217,693 + -1.4 217,740 - HMPREF1058_RS01065 0.12 -0.8 217,854 + HMPREF1058_RS01065 0.30 +0.4 217,882 - HMPREF1058_RS01065 0.35 +2.1 217,884 - HMPREF1058_RS01065 0.35 -0.8 217,913 - HMPREF1058_RS01065 0.40 -1.4 217,914 + HMPREF1058_RS01065 0.40 -0.4 217,914 + HMPREF1058_RS01065 0.40 -0.8
Or see this region's nucleotide sequence