Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00515 and HMPREF1058_RS00510 are separated by 46 nucleotides HMPREF1058_RS00510 and HMPREF1058_RS00505 are separated by 4 nucleotides HMPREF1058_RS00505 and HMPREF1058_RS00500 overlap by 19 nucleotides HMPREF1058_RS00500 and HMPREF1058_RS00495 are separated by 82 nucleotides
HMPREF1058_RS00515: HMPREF1058_RS00515 - YicC family protein, at 61,877 to 62,752
_RS00515
HMPREF1058_RS00510: HMPREF1058_RS00510 - guanylate kinase, at 62,799 to 63,368
_RS00510
HMPREF1058_RS00505: HMPREF1058_RS00505 - hypothetical protein, at 63,373 to 63,555
_RS00505
HMPREF1058_RS00500: HMPREF1058_RS00500 - nicotinate-nucleotide adenylyltransferase, at 63,537 to 64,109
_RS00500
HMPREF1058_RS00495: HMPREF1058_RS00495 - DUF3836 domain-containing protein, at 64,192 to 64,662
_RS00495
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.510 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.567 kb on + strand, within HMPREF1058_RS00515 at 62.622 kb on + strand, within HMPREF1058_RS00515 at 62.781 kb on + strand at 62.781 kb on + strand at 63.435 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.478 kb on + strand, within HMPREF1058_RS00505 at 63.501 kb on + strand, within HMPREF1058_RS00505 at 64.215 kb on + strand at 64.215 kb on + strand at 64.223 kb on - strand at 64.260 kb on + strand, within HMPREF1058_RS00495 at 64.297 kb on + strand, within HMPREF1058_RS00495 at 64.302 kb on + strand, within HMPREF1058_RS00495 at 64.302 kb on + strand, within HMPREF1058_RS00495 at 64.302 kb on + strand, within HMPREF1058_RS00495 at 64.302 kb on + strand, within HMPREF1058_RS00495 at 64.303 kb on - strand, within HMPREF1058_RS00495 at 64.305 kb on - strand, within HMPREF1058_RS00495 at 64.306 kb on + strand, within HMPREF1058_RS00495 at 64.306 kb on + strand, within HMPREF1058_RS00495 at 64.307 kb on - strand, within HMPREF1058_RS00495 at 64.307 kb on - strand, within HMPREF1058_RS00495 at 64.307 kb on - strand, within HMPREF1058_RS00495 at 64.307 kb on - strand, within HMPREF1058_RS00495 at 64.311 kb on - strand, within HMPREF1058_RS00495 at 64.344 kb on + strand, within HMPREF1058_RS00495 at 64.365 kb on + strand, within HMPREF1058_RS00495 at 64.385 kb on + strand, within HMPREF1058_RS00495 at 64.385 kb on + strand, within HMPREF1058_RS00495 at 64.386 kb on - strand, within HMPREF1058_RS00495 at 64.390 kb on - strand, within HMPREF1058_RS00495 at 64.390 kb on - strand, within HMPREF1058_RS00495 at 64.390 kb on - strand, within HMPREF1058_RS00495 at 64.399 kb on - strand, within HMPREF1058_RS00495 at 64.407 kb on - strand, within HMPREF1058_RS00495 at 64.451 kb on - strand, within HMPREF1058_RS00495 at 64.451 kb on - strand, within HMPREF1058_RS00495 at 64.472 kb on + strand, within HMPREF1058_RS00495 at 64.510 kb on - strand, within HMPREF1058_RS00495
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 62,510 + HMPREF1058_RS00515 0.72 -2.2 62,567 + HMPREF1058_RS00515 0.79 +0.6 62,567 + HMPREF1058_RS00515 0.79 -2.5 62,622 + HMPREF1058_RS00515 0.85 +2.2 62,781 + +1.9 62,781 + +0.5 63,435 + HMPREF1058_RS00505 0.34 +0.5 63,478 + HMPREF1058_RS00505 0.57 +2.2 63,478 + HMPREF1058_RS00505 0.57 +0.5 63,501 + HMPREF1058_RS00505 0.70 -0.5 64,215 + -1.0 64,215 + +0.9 64,223 - -1.7 64,260 + HMPREF1058_RS00495 0.14 +0.2 64,297 + HMPREF1058_RS00495 0.22 +1.8 64,302 + HMPREF1058_RS00495 0.23 +1.0 64,302 + HMPREF1058_RS00495 0.23 +1.7 64,302 + HMPREF1058_RS00495 0.23 +0.3 64,302 + HMPREF1058_RS00495 0.23 +1.6 64,303 - HMPREF1058_RS00495 0.24 -0.2 64,305 - HMPREF1058_RS00495 0.24 +1.1 64,306 + HMPREF1058_RS00495 0.24 -1.2 64,306 + HMPREF1058_RS00495 0.24 -2.6 64,307 - HMPREF1058_RS00495 0.24 -0.2 64,307 - HMPREF1058_RS00495 0.24 +0.7 64,307 - HMPREF1058_RS00495 0.24 -1.0 64,307 - HMPREF1058_RS00495 0.24 +0.2 64,311 - HMPREF1058_RS00495 0.25 +1.6 64,344 + HMPREF1058_RS00495 0.32 -0.8 64,365 + HMPREF1058_RS00495 0.37 +2.6 64,385 + HMPREF1058_RS00495 0.41 -1.1 64,385 + HMPREF1058_RS00495 0.41 +0.8 64,386 - HMPREF1058_RS00495 0.41 -0.9 64,390 - HMPREF1058_RS00495 0.42 +1.3 64,390 - HMPREF1058_RS00495 0.42 -0.6 64,390 - HMPREF1058_RS00495 0.42 +0.2 64,399 - HMPREF1058_RS00495 0.44 +1.3 64,407 - HMPREF1058_RS00495 0.46 -1.2 64,451 - HMPREF1058_RS00495 0.55 -1.3 64,451 - HMPREF1058_RS00495 0.55 -0.5 64,472 + HMPREF1058_RS00495 0.59 -1.0 64,510 - HMPREF1058_RS00495 0.68 +0.1
Or see this region's nucleotide sequence