Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00110 and HMPREF1058_RS00105 are separated by 17 nucleotides HMPREF1058_RS00105 and HMPREF1058_RS00100 are separated by 18 nucleotides
HMPREF1058_RS00110: HMPREF1058_RS00110 - right-handed parallel beta-helix repeat-containing protein, at 56,367 to 57,851
_RS00110
HMPREF1058_RS00105: HMPREF1058_RS00105 - rhamnogalacturonan acetylesterase, at 57,869 to 59,143
_RS00105
HMPREF1058_RS00100: HMPREF1058_RS00100 - beta-glucuronidase, at 59,162 to 62,029
_RS00100
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.887 kb on + strand, within HMPREF1058_RS00110 at 57.057 kb on + strand, within HMPREF1058_RS00110 at 57.104 kb on + strand, within HMPREF1058_RS00110 at 57.138 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.178 kb on + strand, within HMPREF1058_RS00110 at 57.234 kb on + strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.260 kb on + strand, within HMPREF1058_RS00110 at 57.341 kb on + strand, within HMPREF1058_RS00110 at 57.342 kb on - strand, within HMPREF1058_RS00110 at 57.375 kb on - strand, within HMPREF1058_RS00110 at 57.389 kb on + strand, within HMPREF1058_RS00110 at 57.477 kb on + strand, within HMPREF1058_RS00110 at 57.478 kb on - strand, within HMPREF1058_RS00110 at 57.531 kb on + strand, within HMPREF1058_RS00110 at 57.536 kb on + strand, within HMPREF1058_RS00110 at 57.810 kb on + strand at 57.811 kb on - strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.835 kb on - strand at 57.860 kb on - strand at 57.871 kb on - strand at 57.989 kb on - strand at 58.022 kb on - strand, within HMPREF1058_RS00105 at 58.064 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.358 kb on - strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.369 kb on - strand, within HMPREF1058_RS00105 at 58.513 kb on - strand, within HMPREF1058_RS00105 at 58.592 kb on + strand, within HMPREF1058_RS00105 at 58.633 kb on + strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.693 kb on + strand, within HMPREF1058_RS00105 at 58.762 kb on + strand, within HMPREF1058_RS00105 at 58.792 kb on + strand, within HMPREF1058_RS00105 at 59.010 kb on + strand, within HMPREF1058_RS00105 at 59.035 kb on + strand at 59.066 kb on - strand at 59.161 kb on - strand at 59.213 kb on + strand at 59.213 kb on + strand at 59.315 kb on - strand at 59.393 kb on + strand at 59.413 kb on + strand at 59.542 kb on - strand, within HMPREF1058_RS00100 at 59.585 kb on + strand, within HMPREF1058_RS00100 at 59.585 kb on + strand, within HMPREF1058_RS00100 at 59.586 kb on - strand, within HMPREF1058_RS00100 at 59.673 kb on + strand, within HMPREF1058_RS00100 at 59.698 kb on + strand, within HMPREF1058_RS00100 at 59.762 kb on + strand, within HMPREF1058_RS00100 at 59.843 kb on + strand, within HMPREF1058_RS00100 at 59.844 kb on - strand, within HMPREF1058_RS00100 at 59.912 kb on + strand, within HMPREF1058_RS00100 at 59.958 kb on + strand, within HMPREF1058_RS00100 at 59.960 kb on + strand, within HMPREF1058_RS00100 at 59.961 kb on - strand, within HMPREF1058_RS00100 at 59.981 kb on + strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.987 kb on - strand, within HMPREF1058_RS00100 at 59.989 kb on - strand, within HMPREF1058_RS00100 at 60.068 kb on - strand, within HMPREF1058_RS00100 at 60.068 kb on - strand, within HMPREF1058_RS00100 at 60.103 kb on + strand, within HMPREF1058_RS00100 at 60.139 kb on + strand, within HMPREF1058_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 56,887 + HMPREF1058_RS00110 0.35 +0.9 57,057 + HMPREF1058_RS00110 0.46 -0.9 57,104 + HMPREF1058_RS00110 0.50 +1.7 57,138 - HMPREF1058_RS00110 0.52 -1.2 57,165 - HMPREF1058_RS00110 0.54 -1.2 57,165 - HMPREF1058_RS00110 0.54 +1.0 57,178 + HMPREF1058_RS00110 0.55 -1.0 57,234 + HMPREF1058_RS00110 0.58 -0.2 57,237 - HMPREF1058_RS00110 0.59 +0.7 57,237 - HMPREF1058_RS00110 0.59 -1.2 57,260 + HMPREF1058_RS00110 0.60 -1.8 57,341 + HMPREF1058_RS00110 0.66 -0.2 57,342 - HMPREF1058_RS00110 0.66 -0.4 57,375 - HMPREF1058_RS00110 0.68 -1.9 57,389 + HMPREF1058_RS00110 0.69 +0.7 57,477 + HMPREF1058_RS00110 0.75 -1.2 57,478 - HMPREF1058_RS00110 0.75 -2.2 57,531 + HMPREF1058_RS00110 0.78 -1.3 57,536 + HMPREF1058_RS00110 0.79 +0.0 57,810 + +0.2 57,811 - -1.2 57,831 + +2.4 57,831 + -0.6 57,831 + +0.3 57,835 - -0.9 57,860 - -0.5 57,871 - +2.0 57,989 - -2.5 58,022 - HMPREF1058_RS00105 0.12 -1.8 58,064 - HMPREF1058_RS00105 0.15 -2.6 58,116 - HMPREF1058_RS00105 0.19 -1.8 58,116 - HMPREF1058_RS00105 0.19 -0.2 58,358 - HMPREF1058_RS00105 0.38 +0.6 58,368 + HMPREF1058_RS00105 0.39 -0.9 58,368 + HMPREF1058_RS00105 0.39 -0.3 58,369 - HMPREF1058_RS00105 0.39 -1.2 58,513 - HMPREF1058_RS00105 0.51 +0.2 58,592 + HMPREF1058_RS00105 0.57 -1.8 58,633 + HMPREF1058_RS00105 0.60 +0.6 58,634 - HMPREF1058_RS00105 0.60 +0.7 58,634 - HMPREF1058_RS00105 0.60 -0.4 58,693 + HMPREF1058_RS00105 0.65 -1.8 58,762 + HMPREF1058_RS00105 0.70 -2.2 58,792 + HMPREF1058_RS00105 0.72 -0.9 59,010 + HMPREF1058_RS00105 0.89 +0.2 59,035 + +0.7 59,066 - +0.2 59,161 - +0.4 59,213 + -0.3 59,213 + +2.2 59,315 - +1.9 59,393 + +0.5 59,413 + -0.8 59,542 - HMPREF1058_RS00100 0.13 +0.8 59,585 + HMPREF1058_RS00100 0.15 -0.3 59,585 + HMPREF1058_RS00100 0.15 +0.6 59,586 - HMPREF1058_RS00100 0.15 -1.0 59,673 + HMPREF1058_RS00100 0.18 -0.2 59,698 + HMPREF1058_RS00100 0.19 -0.5 59,762 + HMPREF1058_RS00100 0.21 -0.6 59,843 + HMPREF1058_RS00100 0.24 +1.8 59,844 - HMPREF1058_RS00100 0.24 -0.2 59,912 + HMPREF1058_RS00100 0.26 -0.9 59,958 + HMPREF1058_RS00100 0.28 -2.5 59,960 + HMPREF1058_RS00100 0.28 -0.8 59,961 - HMPREF1058_RS00100 0.28 -1.2 59,981 + HMPREF1058_RS00100 0.29 -0.4 59,987 - HMPREF1058_RS00100 0.29 -1.5 59,987 - HMPREF1058_RS00100 0.29 +1.3 59,987 - HMPREF1058_RS00100 0.29 +2.1 59,989 - HMPREF1058_RS00100 0.29 +0.3 60,068 - HMPREF1058_RS00100 0.32 -2.5 60,068 - HMPREF1058_RS00100 0.32 -0.3 60,103 + HMPREF1058_RS00100 0.33 +0.4 60,139 + HMPREF1058_RS00100 0.34 +0.2
Or see this region's nucleotide sequence