Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00085 and HMPREF1058_RS00080 are separated by 143 nucleotides HMPREF1058_RS00080 and HMPREF1058_RS00075 are separated by 113 nucleotides
HMPREF1058_RS00085: HMPREF1058_RS00085 - glycoside hydrolase family 88 protein, at 66,807 to 67,937
_RS00085
HMPREF1058_RS00080: HMPREF1058_RS00080 - glycoside hydrolase, at 68,081 to 71,368
_RS00080
HMPREF1058_RS00075: HMPREF1058_RS00075 - hypothetical protein, at 71,482 to 73,335
_RS00075
Position (kb) 68
69
70
71
72 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 67.112 kb on + strand, within HMPREF1058_RS00085 at 67.113 kb on - strand, within HMPREF1058_RS00085 at 67.116 kb on + strand, within HMPREF1058_RS00085 at 67.116 kb on + strand, within HMPREF1058_RS00085 at 67.137 kb on - strand, within HMPREF1058_RS00085 at 67.228 kb on - strand, within HMPREF1058_RS00085 at 67.234 kb on - strand, within HMPREF1058_RS00085 at 67.247 kb on - strand, within HMPREF1058_RS00085 at 67.248 kb on + strand, within HMPREF1058_RS00085 at 67.300 kb on + strand, within HMPREF1058_RS00085 at 67.351 kb on + strand, within HMPREF1058_RS00085 at 67.351 kb on + strand, within HMPREF1058_RS00085 at 67.351 kb on + strand, within HMPREF1058_RS00085 at 67.384 kb on + strand, within HMPREF1058_RS00085 at 67.384 kb on + strand, within HMPREF1058_RS00085 at 67.385 kb on - strand, within HMPREF1058_RS00085 at 67.385 kb on - strand, within HMPREF1058_RS00085 at 67.390 kb on + strand, within HMPREF1058_RS00085 at 67.390 kb on + strand, within HMPREF1058_RS00085 at 67.453 kb on - strand, within HMPREF1058_RS00085 at 67.498 kb on - strand, within HMPREF1058_RS00085 at 67.520 kb on + strand, within HMPREF1058_RS00085 at 67.524 kb on + strand, within HMPREF1058_RS00085 at 67.524 kb on + strand, within HMPREF1058_RS00085 at 67.525 kb on - strand, within HMPREF1058_RS00085 at 67.525 kb on - strand, within HMPREF1058_RS00085 at 67.575 kb on + strand, within HMPREF1058_RS00085 at 67.586 kb on - strand, within HMPREF1058_RS00085 at 67.604 kb on - strand, within HMPREF1058_RS00085 at 67.675 kb on + strand, within HMPREF1058_RS00085 at 67.679 kb on + strand, within HMPREF1058_RS00085 at 67.680 kb on - strand, within HMPREF1058_RS00085 at 67.730 kb on - strand, within HMPREF1058_RS00085 at 67.732 kb on + strand, within HMPREF1058_RS00085 at 67.733 kb on - strand, within HMPREF1058_RS00085 at 67.752 kb on - strand, within HMPREF1058_RS00085 at 67.836 kb on - strand at 67.920 kb on + strand at 67.956 kb on + strand at 67.956 kb on + strand at 67.994 kb on - strand at 68.027 kb on - strand at 68.027 kb on - strand at 68.027 kb on - strand at 68.052 kb on - strand at 68.093 kb on - strand at 68.257 kb on - strand at 68.257 kb on - strand at 68.257 kb on - strand at 68.257 kb on - strand at 68.288 kb on + strand at 68.405 kb on - strand at 68.408 kb on - strand at 68.504 kb on + strand, within HMPREF1058_RS00080 at 68.504 kb on + strand, within HMPREF1058_RS00080 at 68.504 kb on + strand, within HMPREF1058_RS00080 at 68.612 kb on + strand, within HMPREF1058_RS00080 at 68.613 kb on - strand, within HMPREF1058_RS00080 at 68.694 kb on - strand, within HMPREF1058_RS00080 at 68.718 kb on - strand, within HMPREF1058_RS00080 at 68.718 kb on - strand, within HMPREF1058_RS00080 at 68.735 kb on + strand, within HMPREF1058_RS00080 at 68.737 kb on + strand, within HMPREF1058_RS00080 at 68.738 kb on - strand, within HMPREF1058_RS00080 at 68.739 kb on + strand, within HMPREF1058_RS00080 at 68.768 kb on + strand, within HMPREF1058_RS00080 at 68.793 kb on - strand, within HMPREF1058_RS00080 at 69.007 kb on + strand, within HMPREF1058_RS00080 at 69.063 kb on - strand, within HMPREF1058_RS00080 at 69.082 kb on + strand, within HMPREF1058_RS00080 at 69.086 kb on + strand, within HMPREF1058_RS00080 at 69.122 kb on + strand, within HMPREF1058_RS00080 at 69.142 kb on + strand, within HMPREF1058_RS00080 at 69.185 kb on - strand, within HMPREF1058_RS00080 at 69.239 kb on - strand, within HMPREF1058_RS00080 at 69.246 kb on + strand, within HMPREF1058_RS00080 at 69.247 kb on - strand, within HMPREF1058_RS00080 at 69.273 kb on - strand, within HMPREF1058_RS00080 at 69.389 kb on + strand, within HMPREF1058_RS00080 at 69.390 kb on - strand, within HMPREF1058_RS00080 at 69.418 kb on + strand, within HMPREF1058_RS00080 at 69.424 kb on + strand, within HMPREF1058_RS00080 at 69.467 kb on + strand, within HMPREF1058_RS00080 at 69.487 kb on + strand, within HMPREF1058_RS00080 at 69.488 kb on - strand, within HMPREF1058_RS00080 at 69.543 kb on - strand, within HMPREF1058_RS00080 at 69.543 kb on - strand, within HMPREF1058_RS00080 at 69.746 kb on + strand, within HMPREF1058_RS00080 at 69.748 kb on - strand, within HMPREF1058_RS00080 at 69.786 kb on - strand, within HMPREF1058_RS00080 at 69.786 kb on - strand, within HMPREF1058_RS00080 at 69.818 kb on + strand, within HMPREF1058_RS00080 at 69.818 kb on + strand, within HMPREF1058_RS00080 at 69.880 kb on - strand, within HMPREF1058_RS00080 at 69.921 kb on + strand, within HMPREF1058_RS00080 at 69.921 kb on + strand, within HMPREF1058_RS00080 at 69.921 kb on + strand, within HMPREF1058_RS00080 at 69.922 kb on - strand, within HMPREF1058_RS00080 at 69.922 kb on - strand, within HMPREF1058_RS00080 at 70.066 kb on + strand, within HMPREF1058_RS00080 at 70.091 kb on + strand, within HMPREF1058_RS00080 at 70.159 kb on + strand, within HMPREF1058_RS00080 at 70.182 kb on - strand, within HMPREF1058_RS00080 at 70.227 kb on - strand, within HMPREF1058_RS00080 at 70.284 kb on + strand, within HMPREF1058_RS00080 at 70.284 kb on + strand, within HMPREF1058_RS00080 at 70.349 kb on + strand, within HMPREF1058_RS00080 at 70.349 kb on + strand, within HMPREF1058_RS00080 at 70.436 kb on + strand, within HMPREF1058_RS00080 at 70.810 kb on + strand, within HMPREF1058_RS00080 at 70.846 kb on + strand, within HMPREF1058_RS00080 at 70.880 kb on + strand, within HMPREF1058_RS00080 at 71.155 kb on + strand at 71.185 kb on + strand at 71.213 kb on + strand at 71.213 kb on + strand at 71.213 kb on + strand at 71.259 kb on - strand at 71.321 kb on - strand at 71.355 kb on - strand at 71.394 kb on + strand at 71.394 kb on + strand at 71.395 kb on - strand at 71.396 kb on + strand at 71.397 kb on - strand at 71.397 kb on - strand at 71.402 kb on + strand at 71.472 kb on - strand at 71.477 kb on + strand at 71.483 kb on + strand at 71.542 kb on + strand at 71.547 kb on - strand at 71.554 kb on - strand at 71.555 kb on + strand at 71.557 kb on + strand at 71.558 kb on - strand at 71.580 kb on + strand at 71.613 kb on - strand at 71.613 kb on - strand at 71.613 kb on - strand at 71.617 kb on - strand at 71.620 kb on + strand at 71.645 kb on - strand at 71.666 kb on + strand at 71.669 kb on - strand, within HMPREF1058_RS00075 at 71.866 kb on + strand, within HMPREF1058_RS00075 at 71.890 kb on + strand, within HMPREF1058_RS00075 at 72.000 kb on + strand, within HMPREF1058_RS00075 at 72.001 kb on - strand, within HMPREF1058_RS00075 at 72.166 kb on + strand, within HMPREF1058_RS00075 at 72.167 kb on - strand, within HMPREF1058_RS00075 at 72.170 kb on - strand, within HMPREF1058_RS00075 at 72.170 kb on - strand, within HMPREF1058_RS00075 at 72.192 kb on + strand, within HMPREF1058_RS00075 at 72.193 kb on - strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.245 kb on - strand, within HMPREF1058_RS00075 at 72.250 kb on - strand, within HMPREF1058_RS00075 at 72.272 kb on - strand, within HMPREF1058_RS00075 at 72.325 kb on - strand, within HMPREF1058_RS00075 at 72.346 kb on + strand, within HMPREF1058_RS00075 at 72.347 kb on - strand, within HMPREF1058_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 67,112 + HMPREF1058_RS00085 0.27 -3.3 67,113 - HMPREF1058_RS00085 0.27 -0.2 67,116 + HMPREF1058_RS00085 0.27 -3.2 67,116 + HMPREF1058_RS00085 0.27 -1.2 67,137 - HMPREF1058_RS00085 0.29 -3.8 67,228 - HMPREF1058_RS00085 0.37 -2.8 67,234 - HMPREF1058_RS00085 0.38 -3.3 67,247 - HMPREF1058_RS00085 0.39 -2.2 67,248 + HMPREF1058_RS00085 0.39 -2.8 67,300 + HMPREF1058_RS00085 0.44 -1.0 67,351 + HMPREF1058_RS00085 0.48 -3.6 67,351 + HMPREF1058_RS00085 0.48 -2.8 67,351 + HMPREF1058_RS00085 0.48 -1.9 67,384 + HMPREF1058_RS00085 0.51 -1.2 67,384 + HMPREF1058_RS00085 0.51 -1.9 67,385 - HMPREF1058_RS00085 0.51 -1.7 67,385 - HMPREF1058_RS00085 0.51 -2.2 67,390 + HMPREF1058_RS00085 0.52 -1.3 67,390 + HMPREF1058_RS00085 0.52 -1.0 67,453 - HMPREF1058_RS00085 0.57 -1.8 67,498 - HMPREF1058_RS00085 0.61 -0.6 67,520 + HMPREF1058_RS00085 0.63 -1.6 67,524 + HMPREF1058_RS00085 0.63 -4.9 67,524 + HMPREF1058_RS00085 0.63 -1.6 67,525 - HMPREF1058_RS00085 0.63 -0.2 67,525 - HMPREF1058_RS00085 0.63 -4.5 67,575 + HMPREF1058_RS00085 0.68 -2.3 67,586 - HMPREF1058_RS00085 0.69 -1.5 67,604 - HMPREF1058_RS00085 0.70 -1.6 67,675 + HMPREF1058_RS00085 0.77 -1.6 67,679 + HMPREF1058_RS00085 0.77 -3.6 67,680 - HMPREF1058_RS00085 0.77 -4.3 67,730 - HMPREF1058_RS00085 0.82 -0.8 67,732 + HMPREF1058_RS00085 0.82 -2.6 67,733 - HMPREF1058_RS00085 0.82 +0.4 67,752 - HMPREF1058_RS00085 0.84 -2.5 67,836 - -1.8 67,920 + -1.4 67,956 + +0.8 67,956 + -1.2 67,994 - -3.8 68,027 - +0.2 68,027 - -1.2 68,027 - -0.8 68,052 - -0.9 68,093 - +0.2 68,257 - -0.2 68,257 - +0.8 68,257 - -0.5 68,257 - -0.0 68,288 + -0.5 68,405 - -1.5 68,408 - -2.5 68,504 + HMPREF1058_RS00080 0.13 -0.4 68,504 + HMPREF1058_RS00080 0.13 +2.4 68,504 + HMPREF1058_RS00080 0.13 +1.6 68,612 + HMPREF1058_RS00080 0.16 -0.2 68,613 - HMPREF1058_RS00080 0.16 -0.5 68,694 - HMPREF1058_RS00080 0.19 +2.5 68,718 - HMPREF1058_RS00080 0.19 -3.4 68,718 - HMPREF1058_RS00080 0.19 -1.2 68,735 + HMPREF1058_RS00080 0.20 +0.5 68,737 + HMPREF1058_RS00080 0.20 -1.8 68,738 - HMPREF1058_RS00080 0.20 -0.6 68,739 + HMPREF1058_RS00080 0.20 +0.5 68,768 + HMPREF1058_RS00080 0.21 -3.1 68,793 - HMPREF1058_RS00080 0.22 +3.0 69,007 + HMPREF1058_RS00080 0.28 -0.5 69,063 - HMPREF1058_RS00080 0.30 -1.8 69,082 + HMPREF1058_RS00080 0.30 -1.2 69,086 + HMPREF1058_RS00080 0.31 -1.2 69,122 + HMPREF1058_RS00080 0.32 +0.0 69,142 + HMPREF1058_RS00080 0.32 +0.0 69,185 - HMPREF1058_RS00080 0.34 +1.1 69,239 - HMPREF1058_RS00080 0.35 +1.3 69,246 + HMPREF1058_RS00080 0.35 -0.2 69,247 - HMPREF1058_RS00080 0.35 -2.2 69,273 - HMPREF1058_RS00080 0.36 +1.1 69,389 + HMPREF1058_RS00080 0.40 -1.5 69,390 - HMPREF1058_RS00080 0.40 +1.7 69,418 + HMPREF1058_RS00080 0.41 +1.8 69,424 + HMPREF1058_RS00080 0.41 -1.9 69,467 + HMPREF1058_RS00080 0.42 -2.3 69,487 + HMPREF1058_RS00080 0.43 +1.1 69,488 - HMPREF1058_RS00080 0.43 +0.2 69,543 - HMPREF1058_RS00080 0.44 +0.4 69,543 - HMPREF1058_RS00080 0.44 -0.2 69,746 + HMPREF1058_RS00080 0.51 +0.1 69,748 - HMPREF1058_RS00080 0.51 +0.3 69,786 - HMPREF1058_RS00080 0.52 -1.2 69,786 - HMPREF1058_RS00080 0.52 +0.9 69,818 + HMPREF1058_RS00080 0.53 +0.2 69,818 + HMPREF1058_RS00080 0.53 -1.8 69,880 - HMPREF1058_RS00080 0.55 +1.2 69,921 + HMPREF1058_RS00080 0.56 +1.2 69,921 + HMPREF1058_RS00080 0.56 -0.3 69,921 + HMPREF1058_RS00080 0.56 -1.4 69,922 - HMPREF1058_RS00080 0.56 +1.1 69,922 - HMPREF1058_RS00080 0.56 -0.7 70,066 + HMPREF1058_RS00080 0.60 -0.7 70,091 + HMPREF1058_RS00080 0.61 -0.6 70,159 + HMPREF1058_RS00080 0.63 +0.8 70,182 - HMPREF1058_RS00080 0.64 -1.2 70,227 - HMPREF1058_RS00080 0.65 +0.2 70,284 + HMPREF1058_RS00080 0.67 +0.7 70,284 + HMPREF1058_RS00080 0.67 +1.2 70,349 + HMPREF1058_RS00080 0.69 +1.7 70,349 + HMPREF1058_RS00080 0.69 -0.5 70,436 + HMPREF1058_RS00080 0.72 -2.2 70,810 + HMPREF1058_RS00080 0.83 +1.8 70,846 + HMPREF1058_RS00080 0.84 +0.7 70,880 + HMPREF1058_RS00080 0.85 +1.0 71,155 + -0.2 71,185 + +2.2 71,213 + -2.7 71,213 + +2.6 71,213 + -0.2 71,259 - +1.4 71,321 - +0.3 71,355 - +1.0 71,394 + -0.3 71,394 + +1.8 71,395 - -0.8 71,396 + -0.8 71,397 - -1.2 71,397 - -1.8 71,402 + +1.4 71,472 - -0.6 71,477 + -0.9 71,483 + -0.8 71,542 + -2.2 71,547 - -0.6 71,554 - -0.2 71,555 + -0.6 71,557 + -0.8 71,558 - +3.5 71,580 + -0.8 71,613 - -0.2 71,613 - +2.3 71,613 - -2.8 71,617 - -3.0 71,620 + +0.9 71,645 - +0.0 71,666 + +1.0 71,669 - HMPREF1058_RS00075 0.10 -2.2 71,866 + HMPREF1058_RS00075 0.21 +2.5 71,890 + HMPREF1058_RS00075 0.22 +0.1 72,000 + HMPREF1058_RS00075 0.28 -1.2 72,001 - HMPREF1058_RS00075 0.28 -0.8 72,166 + HMPREF1058_RS00075 0.37 -2.2 72,167 - HMPREF1058_RS00075 0.37 +0.6 72,170 - HMPREF1058_RS00075 0.37 -2.2 72,170 - HMPREF1058_RS00075 0.37 +0.8 72,192 + HMPREF1058_RS00075 0.38 +0.9 72,193 - HMPREF1058_RS00075 0.38 -3.0 72,244 + HMPREF1058_RS00075 0.41 -0.8 72,244 + HMPREF1058_RS00075 0.41 +0.5 72,244 + HMPREF1058_RS00075 0.41 -0.9 72,245 - HMPREF1058_RS00075 0.41 +0.5 72,250 - HMPREF1058_RS00075 0.41 +0.5 72,272 - HMPREF1058_RS00075 0.43 +0.5 72,325 - HMPREF1058_RS00075 0.45 -0.2 72,346 + HMPREF1058_RS00075 0.47 +1.1 72,347 - HMPREF1058_RS00075 0.47 -0.2
Or see this region's nucleotide sequence