Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00080 and HMPREF1058_RS00075 are separated by 113 nucleotides HMPREF1058_RS00075 and HMPREF1058_RS00070 are separated by 15 nucleotides
HMPREF1058_RS00080: HMPREF1058_RS00080 - glycoside hydrolase, at 68,081 to 71,368
_RS00080
HMPREF1058_RS00075: HMPREF1058_RS00075 - hypothetical protein, at 71,482 to 73,335
_RS00075
HMPREF1058_RS00070: HMPREF1058_RS00070 - alpha/beta hydrolase, at 73,351 to 74,634
_RS00070
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 70.810 kb on + strand, within HMPREF1058_RS00080 at 70.846 kb on + strand, within HMPREF1058_RS00080 at 70.880 kb on + strand, within HMPREF1058_RS00080 at 71.155 kb on + strand at 71.185 kb on + strand at 71.213 kb on + strand at 71.213 kb on + strand at 71.213 kb on + strand at 71.259 kb on - strand at 71.321 kb on - strand at 71.355 kb on - strand at 71.394 kb on + strand at 71.394 kb on + strand at 71.395 kb on - strand at 71.396 kb on + strand at 71.397 kb on - strand at 71.397 kb on - strand at 71.402 kb on + strand at 71.472 kb on - strand at 71.477 kb on + strand at 71.483 kb on + strand at 71.542 kb on + strand at 71.547 kb on - strand at 71.554 kb on - strand at 71.555 kb on + strand at 71.557 kb on + strand at 71.558 kb on - strand at 71.580 kb on + strand at 71.613 kb on - strand at 71.613 kb on - strand at 71.613 kb on - strand at 71.617 kb on - strand at 71.620 kb on + strand at 71.645 kb on - strand at 71.666 kb on + strand at 71.669 kb on - strand, within HMPREF1058_RS00075 at 71.866 kb on + strand, within HMPREF1058_RS00075 at 71.890 kb on + strand, within HMPREF1058_RS00075 at 72.000 kb on + strand, within HMPREF1058_RS00075 at 72.001 kb on - strand, within HMPREF1058_RS00075 at 72.166 kb on + strand, within HMPREF1058_RS00075 at 72.167 kb on - strand, within HMPREF1058_RS00075 at 72.170 kb on - strand, within HMPREF1058_RS00075 at 72.170 kb on - strand, within HMPREF1058_RS00075 at 72.192 kb on + strand, within HMPREF1058_RS00075 at 72.193 kb on - strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.244 kb on + strand, within HMPREF1058_RS00075 at 72.245 kb on - strand, within HMPREF1058_RS00075 at 72.250 kb on - strand, within HMPREF1058_RS00075 at 72.272 kb on - strand, within HMPREF1058_RS00075 at 72.325 kb on - strand, within HMPREF1058_RS00075 at 72.346 kb on + strand, within HMPREF1058_RS00075 at 72.347 kb on - strand, within HMPREF1058_RS00075 at 72.382 kb on + strand, within HMPREF1058_RS00075 at 72.382 kb on + strand, within HMPREF1058_RS00075 at 72.384 kb on + strand, within HMPREF1058_RS00075 at 72.385 kb on - strand, within HMPREF1058_RS00075 at 72.385 kb on - strand, within HMPREF1058_RS00075 at 72.385 kb on - strand, within HMPREF1058_RS00075 at 72.387 kb on - strand, within HMPREF1058_RS00075 at 72.487 kb on - strand, within HMPREF1058_RS00075 at 72.520 kb on + strand, within HMPREF1058_RS00075 at 72.524 kb on + strand, within HMPREF1058_RS00075 at 72.525 kb on - strand, within HMPREF1058_RS00075 at 72.624 kb on - strand, within HMPREF1058_RS00075 at 72.707 kb on + strand, within HMPREF1058_RS00075 at 72.787 kb on - strand, within HMPREF1058_RS00075 at 72.789 kb on - strand, within HMPREF1058_RS00075 at 72.794 kb on + strand, within HMPREF1058_RS00075 at 72.794 kb on + strand, within HMPREF1058_RS00075 at 72.795 kb on - strand, within HMPREF1058_RS00075 at 72.842 kb on - strand, within HMPREF1058_RS00075 at 72.846 kb on + strand, within HMPREF1058_RS00075 at 73.006 kb on - strand, within HMPREF1058_RS00075 at 73.153 kb on + strand at 73.153 kb on + strand at 73.236 kb on - strand at 73.240 kb on - strand at 73.240 kb on - strand at 73.288 kb on + strand at 73.310 kb on - strand at 73.310 kb on - strand at 73.343 kb on + strand at 73.344 kb on - strand at 73.460 kb on + strand at 73.460 kb on + strand at 73.461 kb on - strand at 73.468 kb on - strand at 73.496 kb on - strand, within HMPREF1058_RS00070 at 73.521 kb on - strand, within HMPREF1058_RS00070 at 73.521 kb on - strand, within HMPREF1058_RS00070 at 73.596 kb on + strand, within HMPREF1058_RS00070 at 73.596 kb on + strand, within HMPREF1058_RS00070 at 73.596 kb on + strand, within HMPREF1058_RS00070 at 73.597 kb on - strand, within HMPREF1058_RS00070 at 73.598 kb on + strand, within HMPREF1058_RS00070 at 73.598 kb on + strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.599 kb on - strand, within HMPREF1058_RS00070 at 73.679 kb on + strand, within HMPREF1058_RS00070 at 73.709 kb on - strand, within HMPREF1058_RS00070 at 73.724 kb on - strand, within HMPREF1058_RS00070 at 73.899 kb on - strand, within HMPREF1058_RS00070 at 73.986 kb on - strand, within HMPREF1058_RS00070 at 74.041 kb on - strand, within HMPREF1058_RS00070 at 74.041 kb on - strand, within HMPREF1058_RS00070 at 74.042 kb on + strand, within HMPREF1058_RS00070 at 74.146 kb on + strand, within HMPREF1058_RS00070 at 74.177 kb on + strand, within HMPREF1058_RS00070 at 74.178 kb on - strand, within HMPREF1058_RS00070 at 74.250 kb on - strand, within HMPREF1058_RS00070 at 74.302 kb on + strand, within HMPREF1058_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 70,810 + HMPREF1058_RS00080 0.83 +1.8 70,846 + HMPREF1058_RS00080 0.84 +0.7 70,880 + HMPREF1058_RS00080 0.85 +1.0 71,155 + -0.2 71,185 + +2.2 71,213 + -2.7 71,213 + +2.6 71,213 + -0.2 71,259 - +1.4 71,321 - +0.3 71,355 - +1.0 71,394 + -0.3 71,394 + +1.8 71,395 - -0.8 71,396 + -0.8 71,397 - -1.2 71,397 - -1.8 71,402 + +1.4 71,472 - -0.6 71,477 + -0.9 71,483 + -0.8 71,542 + -2.2 71,547 - -0.6 71,554 - -0.2 71,555 + -0.6 71,557 + -0.8 71,558 - +3.5 71,580 + -0.8 71,613 - -0.2 71,613 - +2.3 71,613 - -2.8 71,617 - -3.0 71,620 + +0.9 71,645 - +0.0 71,666 + +1.0 71,669 - HMPREF1058_RS00075 0.10 -2.2 71,866 + HMPREF1058_RS00075 0.21 +2.5 71,890 + HMPREF1058_RS00075 0.22 +0.1 72,000 + HMPREF1058_RS00075 0.28 -1.2 72,001 - HMPREF1058_RS00075 0.28 -0.8 72,166 + HMPREF1058_RS00075 0.37 -2.2 72,167 - HMPREF1058_RS00075 0.37 +0.6 72,170 - HMPREF1058_RS00075 0.37 -2.2 72,170 - HMPREF1058_RS00075 0.37 +0.8 72,192 + HMPREF1058_RS00075 0.38 +0.9 72,193 - HMPREF1058_RS00075 0.38 -3.0 72,244 + HMPREF1058_RS00075 0.41 -0.8 72,244 + HMPREF1058_RS00075 0.41 +0.5 72,244 + HMPREF1058_RS00075 0.41 -0.9 72,245 - HMPREF1058_RS00075 0.41 +0.5 72,250 - HMPREF1058_RS00075 0.41 +0.5 72,272 - HMPREF1058_RS00075 0.43 +0.5 72,325 - HMPREF1058_RS00075 0.45 -0.2 72,346 + HMPREF1058_RS00075 0.47 +1.1 72,347 - HMPREF1058_RS00075 0.47 -0.2 72,382 + HMPREF1058_RS00075 0.49 +0.8 72,382 + HMPREF1058_RS00075 0.49 +0.4 72,384 + HMPREF1058_RS00075 0.49 +0.9 72,385 - HMPREF1058_RS00075 0.49 -0.4 72,385 - HMPREF1058_RS00075 0.49 +0.2 72,385 - HMPREF1058_RS00075 0.49 -0.2 72,387 - HMPREF1058_RS00075 0.49 -1.2 72,487 - HMPREF1058_RS00075 0.54 -1.3 72,520 + HMPREF1058_RS00075 0.56 -0.7 72,524 + HMPREF1058_RS00075 0.56 -4.1 72,525 - HMPREF1058_RS00075 0.56 +1.3 72,624 - HMPREF1058_RS00075 0.62 -0.8 72,707 + HMPREF1058_RS00075 0.66 +2.4 72,787 - HMPREF1058_RS00075 0.70 +0.4 72,789 - HMPREF1058_RS00075 0.70 -0.3 72,794 + HMPREF1058_RS00075 0.71 -0.0 72,794 + HMPREF1058_RS00075 0.71 -1.5 72,795 - HMPREF1058_RS00075 0.71 -1.2 72,842 - HMPREF1058_RS00075 0.73 +4.0 72,846 + HMPREF1058_RS00075 0.74 +1.1 73,006 - HMPREF1058_RS00075 0.82 +0.2 73,153 + -1.8 73,153 + -1.2 73,236 - +2.8 73,240 - -1.2 73,240 - +0.3 73,288 + -0.2 73,310 - -0.5 73,310 - -1.0 73,343 + -0.2 73,344 - -0.2 73,460 + -2.6 73,460 + -2.2 73,461 - -2.2 73,468 - +4.7 73,496 - HMPREF1058_RS00070 0.11 +0.8 73,521 - HMPREF1058_RS00070 0.13 -2.6 73,521 - HMPREF1058_RS00070 0.13 -0.8 73,596 + HMPREF1058_RS00070 0.19 -0.2 73,596 + HMPREF1058_RS00070 0.19 +1.7 73,596 + HMPREF1058_RS00070 0.19 -0.2 73,597 - HMPREF1058_RS00070 0.19 -0.9 73,598 + HMPREF1058_RS00070 0.19 -0.7 73,598 + HMPREF1058_RS00070 0.19 +0.7 73,599 - HMPREF1058_RS00070 0.19 -0.7 73,599 - HMPREF1058_RS00070 0.19 -3.0 73,599 - HMPREF1058_RS00070 0.19 -1.2 73,599 - HMPREF1058_RS00070 0.19 -0.8 73,599 - HMPREF1058_RS00070 0.19 -0.5 73,599 - HMPREF1058_RS00070 0.19 -3.0 73,599 - HMPREF1058_RS00070 0.19 -1.2 73,679 + HMPREF1058_RS00070 0.26 -1.8 73,709 - HMPREF1058_RS00070 0.28 +0.9 73,724 - HMPREF1058_RS00070 0.29 -0.0 73,899 - HMPREF1058_RS00070 0.43 +1.4 73,986 - HMPREF1058_RS00070 0.49 +0.8 74,041 - HMPREF1058_RS00070 0.54 -0.7 74,041 - HMPREF1058_RS00070 0.54 +0.2 74,042 + HMPREF1058_RS00070 0.54 -1.4 74,146 + HMPREF1058_RS00070 0.62 -1.8 74,177 + HMPREF1058_RS00070 0.64 -0.2 74,178 - HMPREF1058_RS00070 0.64 -1.5 74,250 - HMPREF1058_RS00070 0.70 +1.2 74,302 + HMPREF1058_RS00070 0.74 +0.6
Or see this region's nucleotide sequence