Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03763

Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03762 and MPMX20_03763 are separated by 125 nucleotidesMPMX20_03763 and MPMX20_03764 are separated by 23 nucleotides MPMX20_03762: MPMX20_03762 - Glycine dehydrogenase (decarboxylating), at 3,963,260 to 3,966,133 _03762 MPMX20_03763: MPMX20_03763 - Glycine cleavage system H protein, at 3,966,259 to 3,966,648 _03763 MPMX20_03764: MPMX20_03764 - Aminomethyltransferase, at 3,966,672 to 3,967,766 _03764 Position (kb) 3966 3967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3965.303 kb on - strand, within MPMX20_03762at 3965.321 kb on - strand, within MPMX20_03762at 3965.331 kb on - strand, within MPMX20_03762at 3965.362 kb on - strand, within MPMX20_03762at 3965.492 kb on + strand, within MPMX20_03762at 3965.518 kb on - strand, within MPMX20_03762at 3965.550 kb on - strand, within MPMX20_03762at 3965.575 kb on - strand, within MPMX20_03762at 3965.586 kb on - strand, within MPMX20_03762at 3965.586 kb on - strand, within MPMX20_03762at 3965.695 kb on - strand, within MPMX20_03762at 3965.753 kb on - strand, within MPMX20_03762at 3965.755 kb on - strand, within MPMX20_03762at 3965.768 kb on + strand, within MPMX20_03762at 3965.768 kb on + strand, within MPMX20_03762at 3965.853 kb on + strandat 3965.864 kb on + strandat 3965.864 kb on + strandat 3965.868 kb on - strandat 3965.872 kb on - strandat 3965.872 kb on - strandat 3965.888 kb on - strandat 3965.895 kb on + strandat 3965.896 kb on - strandat 3965.968 kb on - strandat 3965.983 kb on - strandat 3966.039 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.115 kb on + strandat 3966.123 kb on - strandat 3966.123 kb on - strandat 3966.181 kb on - strandat 3966.191 kb on + strandat 3966.193 kb on - strandat 3966.196 kb on + strandat 3966.222 kb on - strandat 3966.223 kb on + strandat 3966.223 kb on + strandat 3966.226 kb on - strandat 3966.231 kb on - strandat 3966.231 kb on - strandat 3966.233 kb on + strandat 3966.257 kb on - strandat 3966.257 kb on - strandat 3966.258 kb on - strandat 3966.258 kb on - strandat 3966.274 kb on - strandat 3966.376 kb on - strand, within MPMX20_03763at 3966.378 kb on + strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.386 kb on - strand, within MPMX20_03763at 3966.394 kb on - strand, within MPMX20_03763at 3966.469 kb on - strand, within MPMX20_03763at 3966.486 kb on - strand, within MPMX20_03763at 3966.506 kb on + strand, within MPMX20_03763at 3966.572 kb on + strand, within MPMX20_03763at 3966.572 kb on - strand, within MPMX20_03763at 3966.580 kb on - strand, within MPMX20_03763at 3966.741 kb on + strandat 3966.788 kb on + strand, within MPMX20_03764at 3966.899 kb on - strand, within MPMX20_03764at 3967.013 kb on - strand, within MPMX20_03764at 3967.072 kb on - strand, within MPMX20_03764at 3967.073 kb on - strand, within MPMX20_03764at 3967.126 kb on + strand, within MPMX20_03764at 3967.240 kb on - strand, within MPMX20_03764at 3967.250 kb on + strand, within MPMX20_03764at 3967.267 kb on + strand, within MPMX20_03764at 3967.267 kb on + strand, within MPMX20_03764at 3967.267 kb on + strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.275 kb on - strand, within MPMX20_03764at 3967.277 kb on + strand, within MPMX20_03764at 3967.277 kb on + strand, within MPMX20_03764at 3967.277 kb on + strand, within MPMX20_03764at 3967.277 kb on + strand, within MPMX20_03764at 3967.285 kb on - strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.300 kb on + strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.308 kb on - strand, within MPMX20_03764at 3967.365 kb on - strand, within MPMX20_03764at 3967.369 kb on + strand, within MPMX20_03764at 3967.375 kb on + strand, within MPMX20_03764at 3967.377 kb on - strand, within MPMX20_03764at 3967.391 kb on - strand, within MPMX20_03764at 3967.391 kb on - strand, within MPMX20_03764at 3967.505 kb on + strand, within MPMX20_03764

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
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3,965,303 - MPMX20_03762 0.71 -2.4
3,965,321 - MPMX20_03762 0.72 -0.7
3,965,331 - MPMX20_03762 0.72 -0.6
3,965,362 - MPMX20_03762 0.73 -2.0
3,965,492 + MPMX20_03762 0.78 -1.2
3,965,518 - MPMX20_03762 0.79 -1.1
3,965,550 - MPMX20_03762 0.80 -1.0
3,965,575 - MPMX20_03762 0.81 +0.1
3,965,586 - MPMX20_03762 0.81 -0.7
3,965,586 - MPMX20_03762 0.81 +0.6
3,965,695 - MPMX20_03762 0.85 -1.1
3,965,753 - MPMX20_03762 0.87 +2.2
3,965,755 - MPMX20_03762 0.87 +0.6
3,965,768 + MPMX20_03762 0.87 +1.5
3,965,768 + MPMX20_03762 0.87 -1.1
3,965,853 + +0.6
3,965,864 + +1.0
3,965,864 + -0.1
3,965,868 - -1.6
3,965,872 - -0.6
3,965,872 - -2.4
3,965,888 - -0.0
3,965,895 + +0.2
3,965,896 - -1.5
3,965,968 - -1.4
3,965,983 - -0.8
3,966,039 + -1.1
3,966,115 + -1.4
3,966,115 + -1.2
3,966,115 + -1.3
3,966,115 + -2.5
3,966,115 + -1.6
3,966,123 - -0.4
3,966,123 - -0.8
3,966,181 - -0.8
3,966,191 + +1.2
3,966,193 - +0.6
3,966,196 + -0.1
3,966,222 - +0.3
3,966,223 + +0.0
3,966,223 + -1.2
3,966,226 - -0.3
3,966,231 - -1.0
3,966,231 - -1.0
3,966,233 + -0.1
3,966,257 - -1.1
3,966,257 - +0.4
3,966,258 - -1.2
3,966,258 - -1.2
3,966,274 - -0.9
3,966,376 - MPMX20_03763 0.30 -2.9
3,966,378 + MPMX20_03763 0.31 -0.1
3,966,386 - MPMX20_03763 0.33 -1.0
3,966,386 - MPMX20_03763 0.33 -0.8
3,966,386 - MPMX20_03763 0.33 +1.2
3,966,394 - MPMX20_03763 0.35 -0.2
3,966,469 - MPMX20_03763 0.54 -1.2
3,966,486 - MPMX20_03763 0.58 -2.0
3,966,506 + MPMX20_03763 0.63 -2.5
3,966,572 + MPMX20_03763 0.80 -1.0
3,966,572 - MPMX20_03763 0.80 -1.1
3,966,580 - MPMX20_03763 0.82 +1.0
3,966,741 + -1.1
3,966,788 + MPMX20_03764 0.11 +0.2
3,966,899 - MPMX20_03764 0.21 -1.1
3,967,013 - MPMX20_03764 0.31 -0.6
3,967,072 - MPMX20_03764 0.37 -0.9
3,967,073 - MPMX20_03764 0.37 -1.1
3,967,126 + MPMX20_03764 0.41 +0.3
3,967,240 - MPMX20_03764 0.52 -0.3
3,967,250 + MPMX20_03764 0.53 +0.4
3,967,267 + MPMX20_03764 0.54 -0.0
3,967,267 + MPMX20_03764 0.54 -0.6
3,967,267 + MPMX20_03764 0.54 +0.6
3,967,275 - MPMX20_03764 0.55 -1.4
3,967,275 - MPMX20_03764 0.55 -0.4
3,967,275 - MPMX20_03764 0.55 -0.5
3,967,275 - MPMX20_03764 0.55 -1.0
3,967,275 - MPMX20_03764 0.55 -0.8
3,967,275 - MPMX20_03764 0.55 +0.3
3,967,277 + MPMX20_03764 0.55 -0.3
3,967,277 + MPMX20_03764 0.55 -2.2
3,967,277 + MPMX20_03764 0.55 -0.2
3,967,277 + MPMX20_03764 0.55 -0.1
3,967,285 - MPMX20_03764 0.56 -0.4
3,967,300 + MPMX20_03764 0.57 -1.7
3,967,300 + MPMX20_03764 0.57 -1.0
3,967,300 + MPMX20_03764 0.57 -1.5
3,967,300 + MPMX20_03764 0.57 -1.1
3,967,300 + MPMX20_03764 0.57 -2.1
3,967,300 + MPMX20_03764 0.57 +1.2
3,967,300 + MPMX20_03764 0.57 -0.6
3,967,300 + MPMX20_03764 0.57 +0.4
3,967,300 + MPMX20_03764 0.57 +0.1
3,967,308 - MPMX20_03764 0.58 -0.8
3,967,308 - MPMX20_03764 0.58 -1.0
3,967,308 - MPMX20_03764 0.58 -1.2
3,967,308 - MPMX20_03764 0.58 -1.0
3,967,308 - MPMX20_03764 0.58 -1.7
3,967,308 - MPMX20_03764 0.58 -2.3
3,967,308 - MPMX20_03764 0.58 +0.0
3,967,308 - MPMX20_03764 0.58 -1.1
3,967,308 - MPMX20_03764 0.58 -1.2
3,967,308 - MPMX20_03764 0.58 -1.1
3,967,308 - MPMX20_03764 0.58 -0.8
3,967,365 - MPMX20_03764 0.63 -1.6
3,967,369 + MPMX20_03764 0.64 -4.1
3,967,375 + MPMX20_03764 0.64 -1.0
3,967,377 - MPMX20_03764 0.64 -2.8
3,967,391 - MPMX20_03764 0.66 -1.0
3,967,391 - MPMX20_03764 0.66 -1.6
3,967,505 + MPMX20_03764 0.76 -0.7

Or see this region's nucleotide sequence