Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03629

Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03628 and MPMX20_03629 are separated by 116 nucleotidesMPMX20_03629 and MPMX20_03630 overlap by 7 nucleotidesMPMX20_03630 and MPMX20_03631 overlap by 20 nucleotides MPMX20_03628: MPMX20_03628 - Murein hydrolase activator NlpD, at 3,817,364 to 3,818,488 _03628 MPMX20_03629: MPMX20_03629 - Protein-L-isoaspartate O-methyltransferase, at 3,818,605 to 3,819,231 _03629 MPMX20_03630: MPMX20_03630 - 5'/3'-nucleotidase SurE, at 3,819,225 to 3,819,986 _03630 MPMX20_03631: MPMX20_03631 - tRNA pseudouridine synthase D, at 3,819,967 to 3,821,016 _03631 Position (kb) 3818 3819 3820Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3817.611 kb on - strand, within MPMX20_03628at 3817.634 kb on - strand, within MPMX20_03628at 3817.634 kb on - strand, within MPMX20_03628at 3817.638 kb on + strand, within MPMX20_03628at 3817.638 kb on + strand, within MPMX20_03628at 3817.655 kb on + strand, within MPMX20_03628at 3817.711 kb on + strand, within MPMX20_03628at 3817.719 kb on - strand, within MPMX20_03628at 3817.724 kb on - strand, within MPMX20_03628at 3817.724 kb on - strand, within MPMX20_03628at 3817.749 kb on - strand, within MPMX20_03628at 3817.757 kb on - strand, within MPMX20_03628at 3817.768 kb on + strand, within MPMX20_03628at 3817.778 kb on + strand, within MPMX20_03628at 3817.789 kb on - strand, within MPMX20_03628at 3817.853 kb on + strand, within MPMX20_03628at 3817.891 kb on + strand, within MPMX20_03628at 3817.907 kb on - strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.055 kb on + strand, within MPMX20_03628at 3818.073 kb on - strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.103 kb on + strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.111 kb on - strand, within MPMX20_03628at 3818.139 kb on - strand, within MPMX20_03628at 3818.154 kb on - strand, within MPMX20_03628at 3818.186 kb on + strand, within MPMX20_03628at 3818.186 kb on + strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.194 kb on - strand, within MPMX20_03628at 3818.223 kb on - strand, within MPMX20_03628at 3818.223 kb on - strand, within MPMX20_03628at 3818.232 kb on + strand, within MPMX20_03628at 3818.296 kb on + strand, within MPMX20_03628at 3818.376 kb on + strandat 3818.376 kb on + strandat 3818.384 kb on - strandat 3818.415 kb on - strandat 3818.424 kb on - strandat 3818.424 kb on - strandat 3818.486 kb on + strandat 3818.486 kb on + strandat 3818.486 kb on + strandat 3818.494 kb on - strandat 3818.504 kb on + strandat 3818.618 kb on + strandat 3818.621 kb on - strandat 3818.781 kb on + strand, within MPMX20_03629at 3818.781 kb on + strand, within MPMX20_03629at 3818.909 kb on + strand, within MPMX20_03629at 3818.917 kb on - strand, within MPMX20_03629at 3818.925 kb on - strand, within MPMX20_03629at 3819.052 kb on - strand, within MPMX20_03629at 3819.072 kb on + strand, within MPMX20_03629at 3819.084 kb on + strand, within MPMX20_03629at 3819.188 kb on + strandat 3819.401 kb on + strand, within MPMX20_03630at 3819.432 kb on + strand, within MPMX20_03630at 3819.432 kb on + strand, within MPMX20_03630at 3819.566 kb on + strand, within MPMX20_03630at 3819.571 kb on - strand, within MPMX20_03630at 3819.573 kb on + strand, within MPMX20_03630at 3819.591 kb on + strand, within MPMX20_03630at 3819.626 kb on + strand, within MPMX20_03630at 3819.634 kb on - strand, within MPMX20_03630at 3819.740 kb on - strand, within MPMX20_03630at 3819.831 kb on + strand, within MPMX20_03630at 3819.858 kb on + strand, within MPMX20_03630at 3819.894 kb on + strand, within MPMX20_03630at 3819.933 kb on + strandat 3819.933 kb on + strandat 3819.972 kb on - strandat 3820.008 kb on - strandat 3820.090 kb on + strand, within MPMX20_03631at 3820.106 kb on - strand, within MPMX20_03631at 3820.111 kb on - strand, within MPMX20_03631at 3820.155 kb on + strand, within MPMX20_03631at 3820.197 kb on - strand, within MPMX20_03631

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
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3,817,611 - MPMX20_03628 0.22 -0.8
3,817,634 - MPMX20_03628 0.24 +0.9
3,817,634 - MPMX20_03628 0.24 +1.0
3,817,638 + MPMX20_03628 0.24 +3.3
3,817,638 + MPMX20_03628 0.24 +3.9
3,817,655 + MPMX20_03628 0.26 +1.7
3,817,711 + MPMX20_03628 0.31 +3.3
3,817,719 - MPMX20_03628 0.32 +0.1
3,817,724 - MPMX20_03628 0.32 +1.2
3,817,724 - MPMX20_03628 0.32 +1.3
3,817,749 - MPMX20_03628 0.34 +0.5
3,817,757 - MPMX20_03628 0.35 +1.6
3,817,768 + MPMX20_03628 0.36 +3.4
3,817,778 + MPMX20_03628 0.37 +3.5
3,817,789 - MPMX20_03628 0.38 +1.1
3,817,853 + MPMX20_03628 0.43 +0.6
3,817,891 + MPMX20_03628 0.47 +0.4
3,817,907 - MPMX20_03628 0.48 -2.4
3,818,055 + MPMX20_03628 0.61 -2.1
3,818,055 + MPMX20_03628 0.61 +0.3
3,818,055 + MPMX20_03628 0.61 +1.2
3,818,055 + MPMX20_03628 0.61 -0.8
3,818,055 + MPMX20_03628 0.61 +1.5
3,818,073 - MPMX20_03628 0.63 +0.6
3,818,103 + MPMX20_03628 0.66 -0.7
3,818,103 + MPMX20_03628 0.66 +0.0
3,818,103 + MPMX20_03628 0.66 +0.6
3,818,103 + MPMX20_03628 0.66 -1.0
3,818,103 + MPMX20_03628 0.66 +0.3
3,818,103 + MPMX20_03628 0.66 +0.6
3,818,103 + MPMX20_03628 0.66 -1.1
3,818,103 + MPMX20_03628 0.66 +0.0
3,818,103 + MPMX20_03628 0.66 +0.5
3,818,103 + MPMX20_03628 0.66 +0.9
3,818,103 + MPMX20_03628 0.66 -0.9
3,818,103 + MPMX20_03628 0.66 -1.3
3,818,111 - MPMX20_03628 0.66 -0.1
3,818,111 - MPMX20_03628 0.66 +1.0
3,818,111 - MPMX20_03628 0.66 +0.8
3,818,111 - MPMX20_03628 0.66 -0.7
3,818,111 - MPMX20_03628 0.66 +0.2
3,818,111 - MPMX20_03628 0.66 -1.8
3,818,111 - MPMX20_03628 0.66 +0.8
3,818,139 - MPMX20_03628 0.69 -0.5
3,818,154 - MPMX20_03628 0.70 -1.3
3,818,186 + MPMX20_03628 0.73 -0.4
3,818,186 + MPMX20_03628 0.73 +0.2
3,818,194 - MPMX20_03628 0.74 +1.0
3,818,194 - MPMX20_03628 0.74 -1.1
3,818,194 - MPMX20_03628 0.74 -0.5
3,818,223 - MPMX20_03628 0.76 -2.6
3,818,223 - MPMX20_03628 0.76 -0.5
3,818,232 + MPMX20_03628 0.77 +0.5
3,818,296 + MPMX20_03628 0.83 +0.2
3,818,376 + -1.2
3,818,376 + -0.9
3,818,384 - -0.9
3,818,415 - -0.1
3,818,424 - +0.9
3,818,424 - -0.3
3,818,486 + +1.4
3,818,486 + +0.4
3,818,486 + -1.0
3,818,494 - -0.1
3,818,504 + -1.0
3,818,618 + +0.6
3,818,621 - -0.6
3,818,781 + MPMX20_03629 0.28 -0.4
3,818,781 + MPMX20_03629 0.28 -2.2
3,818,909 + MPMX20_03629 0.48 +1.2
3,818,917 - MPMX20_03629 0.50 -0.0
3,818,925 - MPMX20_03629 0.51 -1.4
3,819,052 - MPMX20_03629 0.71 -1.4
3,819,072 + MPMX20_03629 0.74 -0.1
3,819,084 + MPMX20_03629 0.76 -0.4
3,819,188 + -0.3
3,819,401 + MPMX20_03630 0.23 -2.2
3,819,432 + MPMX20_03630 0.27 -1.5
3,819,432 + MPMX20_03630 0.27 -1.0
3,819,566 + MPMX20_03630 0.45 -1.7
3,819,571 - MPMX20_03630 0.45 +0.1
3,819,573 + MPMX20_03630 0.46 -0.1
3,819,591 + MPMX20_03630 0.48 -0.1
3,819,626 + MPMX20_03630 0.53 -0.2
3,819,634 - MPMX20_03630 0.54 -3.1
3,819,740 - MPMX20_03630 0.68 +0.4
3,819,831 + MPMX20_03630 0.80 -1.0
3,819,858 + MPMX20_03630 0.83 -2.8
3,819,894 + MPMX20_03630 0.88 -0.5
3,819,933 + -1.1
3,819,933 + -0.8
3,819,972 - -0.5
3,820,008 - +0.4
3,820,090 + MPMX20_03631 0.12 +0.2
3,820,106 - MPMX20_03631 0.13 +0.2
3,820,111 - MPMX20_03631 0.14 +0.6
3,820,155 + MPMX20_03631 0.18 -1.0
3,820,197 - MPMX20_03631 0.22 -0.2

Or see this region's nucleotide sequence