Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02462 and MPMX20_02463 are separated by 14 nucleotides MPMX20_02463 and MPMX20_02464 are separated by 16 nucleotides MPMX20_02464 and MPMX20_02465 are separated by 28 nucleotides MPMX20_02465 and MPMX20_02466 overlap by 14 nucleotides
MPMX20_02462: MPMX20_02462 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 2,603,326 to 2,604,381
_02462
MPMX20_02463: MPMX20_02463 - 5-keto-L-gluconate epimerase, at 2,604,396 to 2,605,184
_02463
MPMX20_02464: MPMX20_02464 - L-threonine 3-dehydrogenase, at 2,605,201 to 2,606,253
_02464
MPMX20_02465: MPMX20_02465 - Inner membrane ABC transporter permease protein YcjP, at 2,606,282 to 2,607,124
_02465
MPMX20_02466: MPMX20_02466 - Inner membrane ABC transporter permease protein YcjO, at 2,607,111 to 2,607,992
_02466
Position (kb)
2605
2606
2607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2604.244 kb on - strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.254 kb on - strand, within MPMX20_02462 at 2604.259 kb on + strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462 at 2604.374 kb on - strand at 2604.473 kb on - strand at 2604.483 kb on - strand, within MPMX20_02463 at 2604.566 kb on - strand, within MPMX20_02463 at 2604.577 kb on + strand, within MPMX20_02463 at 2604.587 kb on + strand, within MPMX20_02463 at 2604.665 kb on - strand, within MPMX20_02463 at 2604.746 kb on + strand, within MPMX20_02463 at 2604.754 kb on - strand, within MPMX20_02463 at 2604.822 kb on + strand, within MPMX20_02463 at 2604.846 kb on + strand, within MPMX20_02463 at 2604.933 kb on - strand, within MPMX20_02463 at 2604.937 kb on + strand, within MPMX20_02463 at 2604.947 kb on + strand, within MPMX20_02463 at 2604.947 kb on + strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2605.048 kb on + strand, within MPMX20_02463 at 2605.158 kb on + strand at 2605.282 kb on + strand at 2605.287 kb on + strand at 2605.297 kb on + strand at 2605.312 kb on + strand, within MPMX20_02464 at 2605.320 kb on - strand, within MPMX20_02464 at 2605.343 kb on - strand, within MPMX20_02464 at 2605.453 kb on + strand, within MPMX20_02464 at 2605.524 kb on + strand, within MPMX20_02464 at 2605.524 kb on + strand, within MPMX20_02464 at 2605.582 kb on - strand, within MPMX20_02464 at 2605.611 kb on - strand, within MPMX20_02464 at 2605.611 kb on - strand, within MPMX20_02464 at 2605.622 kb on - strand, within MPMX20_02464 at 2605.629 kb on + strand, within MPMX20_02464 at 2605.694 kb on - strand, within MPMX20_02464 at 2605.758 kb on + strand, within MPMX20_02464 at 2605.818 kb on - strand, within MPMX20_02464 at 2605.818 kb on - strand, within MPMX20_02464 at 2605.824 kb on + strand, within MPMX20_02464 at 2605.824 kb on + strand, within MPMX20_02464 at 2605.926 kb on + strand, within MPMX20_02464 at 2605.934 kb on - strand, within MPMX20_02464 at 2605.952 kb on + strand, within MPMX20_02464 at 2605.962 kb on + strand, within MPMX20_02464 at 2606.003 kb on + strand, within MPMX20_02464 at 2606.050 kb on + strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.081 kb on + strand, within MPMX20_02464 at 2606.081 kb on + strand, within MPMX20_02464 at 2606.089 kb on - strand, within MPMX20_02464 at 2606.142 kb on + strand, within MPMX20_02464 at 2606.222 kb on + strand at 2606.225 kb on - strand at 2606.293 kb on - strand at 2606.293 kb on - strand at 2606.325 kb on + strand at 2606.326 kb on + strand at 2606.335 kb on + strand at 2606.404 kb on - strand, within MPMX20_02465 at 2606.417 kb on - strand, within MPMX20_02465 at 2606.578 kb on + strand, within MPMX20_02465 at 2606.586 kb on - strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.655 kb on + strand, within MPMX20_02465 at 2606.675 kb on - strand, within MPMX20_02465 at 2606.679 kb on - strand, within MPMX20_02465 at 2606.695 kb on - strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.846 kb on - strand, within MPMX20_02465 at 2606.932 kb on + strand, within MPMX20_02465 at 2606.961 kb on + strand, within MPMX20_02465 at 2607.014 kb on + strand, within MPMX20_02465 at 2607.020 kb on - strand, within MPMX20_02465 at 2607.032 kb on - strand, within MPMX20_02465 at 2607.050 kb on - strand at 2607.068 kb on - strand at 2607.070 kb on + strand at 2607.082 kb on + strand at 2607.090 kb on - strand at 2607.128 kb on + strand at 2607.204 kb on + strand, within MPMX20_02466 at 2607.210 kb on - strand, within MPMX20_02466 at 2607.231 kb on + strand, within MPMX20_02466 at 2607.233 kb on + strand, within MPMX20_02466 at 2607.237 kb on + strand, within MPMX20_02466 at 2607.237 kb on - strand, within MPMX20_02466 at 2607.241 kb on - strand, within MPMX20_02466
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 2,604,244 - MPMX20_02462 0.87 +0.2 2,604,246 + MPMX20_02462 0.87 -0.7 2,604,246 + MPMX20_02462 0.87 +1.0 2,604,254 - MPMX20_02462 0.88 +0.2 2,604,259 + MPMX20_02462 0.88 +0.0 2,604,267 - MPMX20_02462 0.89 +0.2 2,604,267 - MPMX20_02462 0.89 -0.2 2,604,374 - +0.3 2,604,473 - -1.0 2,604,483 - MPMX20_02463 0.11 -1.4 2,604,566 - MPMX20_02463 0.22 -0.2 2,604,577 + MPMX20_02463 0.23 -0.6 2,604,587 + MPMX20_02463 0.24 -1.5 2,604,665 - MPMX20_02463 0.34 +1.0 2,604,746 + MPMX20_02463 0.44 +2.2 2,604,754 - MPMX20_02463 0.45 -0.6 2,604,822 + MPMX20_02463 0.54 -1.0 2,604,846 + MPMX20_02463 0.57 +0.6 2,604,933 - MPMX20_02463 0.68 +0.1 2,604,937 + MPMX20_02463 0.69 -0.1 2,604,947 + MPMX20_02463 0.70 +0.4 2,604,947 + MPMX20_02463 0.70 -0.3 2,604,955 - MPMX20_02463 0.71 -0.5 2,604,955 - MPMX20_02463 0.71 -0.4 2,604,955 - MPMX20_02463 0.71 +1.6 2,605,048 + MPMX20_02463 0.83 -1.0 2,605,158 + +0.7 2,605,282 + +0.3 2,605,287 + +0.6 2,605,297 + +1.9 2,605,312 + MPMX20_02464 0.11 -1.4 2,605,320 - MPMX20_02464 0.11 -0.4 2,605,343 - MPMX20_02464 0.13 -0.3 2,605,453 + MPMX20_02464 0.24 -0.7 2,605,524 + MPMX20_02464 0.31 +1.2 2,605,524 + MPMX20_02464 0.31 -0.5 2,605,582 - MPMX20_02464 0.36 +0.8 2,605,611 - MPMX20_02464 0.39 +0.2 2,605,611 - MPMX20_02464 0.39 -1.1 2,605,622 - MPMX20_02464 0.40 +0.2 2,605,629 + MPMX20_02464 0.41 -0.2 2,605,694 - MPMX20_02464 0.47 -0.1 2,605,758 + MPMX20_02464 0.53 -0.1 2,605,818 - MPMX20_02464 0.59 +0.9 2,605,818 - MPMX20_02464 0.59 -0.1 2,605,824 + MPMX20_02464 0.59 +0.6 2,605,824 + MPMX20_02464 0.59 -0.9 2,605,926 + MPMX20_02464 0.69 +4.0 2,605,934 - MPMX20_02464 0.70 +0.4 2,605,952 + MPMX20_02464 0.71 -0.4 2,605,962 + MPMX20_02464 0.72 +0.4 2,606,003 + MPMX20_02464 0.76 -0.3 2,606,050 + MPMX20_02464 0.81 +0.5 2,606,069 - MPMX20_02464 0.82 +1.6 2,606,069 - MPMX20_02464 0.82 -1.1 2,606,069 - MPMX20_02464 0.82 +0.6 2,606,081 + MPMX20_02464 0.84 -1.0 2,606,081 + MPMX20_02464 0.84 +0.6 2,606,089 - MPMX20_02464 0.84 -0.1 2,606,142 + MPMX20_02464 0.89 +1.2 2,606,222 + +6.3 2,606,225 - +1.2 2,606,293 - +2.2 2,606,293 - -1.1 2,606,325 + -0.8 2,606,326 + -1.1 2,606,335 + -1.1 2,606,404 - MPMX20_02465 0.14 +0.6 2,606,417 - MPMX20_02465 0.16 +0.4 2,606,578 + MPMX20_02465 0.35 +0.4 2,606,586 - MPMX20_02465 0.36 -0.1 2,606,644 + MPMX20_02465 0.43 +0.2 2,606,644 + MPMX20_02465 0.43 -1.7 2,606,644 + MPMX20_02465 0.43 -1.4 2,606,652 - MPMX20_02465 0.44 -1.7 2,606,652 - MPMX20_02465 0.44 -0.1 2,606,652 - MPMX20_02465 0.44 -0.3 2,606,655 + MPMX20_02465 0.44 -1.0 2,606,675 - MPMX20_02465 0.47 -0.4 2,606,679 - MPMX20_02465 0.47 -0.6 2,606,695 - MPMX20_02465 0.49 +0.6 2,606,768 + MPMX20_02465 0.58 -0.8 2,606,768 + MPMX20_02465 0.58 +0.2 2,606,768 + MPMX20_02465 0.58 +0.3 2,606,768 + MPMX20_02465 0.58 +0.7 2,606,768 + MPMX20_02465 0.58 -1.4 2,606,776 - MPMX20_02465 0.59 -1.8 2,606,776 - MPMX20_02465 0.59 -0.2 2,606,776 - MPMX20_02465 0.59 +0.9 2,606,776 - MPMX20_02465 0.59 -0.4 2,606,776 - MPMX20_02465 0.59 -0.1 2,606,846 - MPMX20_02465 0.67 +1.8 2,606,932 + MPMX20_02465 0.77 +0.4 2,606,961 + MPMX20_02465 0.81 -0.3 2,607,014 + MPMX20_02465 0.87 +0.5 2,607,020 - MPMX20_02465 0.88 -2.8 2,607,032 - MPMX20_02465 0.89 -3.1 2,607,050 - -0.5 2,607,068 - -1.6 2,607,070 + +0.4 2,607,082 + +0.7 2,607,090 - +1.1 2,607,128 + -0.3 2,607,204 + MPMX20_02466 0.11 -0.2 2,607,210 - MPMX20_02466 0.11 -1.3 2,607,231 + MPMX20_02466 0.14 +0.9 2,607,233 + MPMX20_02466 0.14 -2.4 2,607,237 + MPMX20_02466 0.14 -1.5 2,607,237 - MPMX20_02466 0.14 +0.5 2,607,241 - MPMX20_02466 0.15 +2.2
Or see this region's nucleotide sequence