Experiment: TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02462 and MPMX20_02463 are separated by 14 nucleotides MPMX20_02463 and MPMX20_02464 are separated by 16 nucleotides
MPMX20_02462: MPMX20_02462 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 2,603,326 to 2,604,381
_02462
MPMX20_02463: MPMX20_02463 - 5-keto-L-gluconate epimerase, at 2,604,396 to 2,605,184
_02463
MPMX20_02464: MPMX20_02464 - L-threonine 3-dehydrogenase, at 2,605,201 to 2,606,253
_02464
Position (kb)
2604
2605
2606 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2603.403 kb on + strand at 2603.436 kb on + strand, within MPMX20_02462 at 2603.462 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.499 kb on + strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.507 kb on - strand, within MPMX20_02462 at 2603.551 kb on - strand, within MPMX20_02462 at 2603.566 kb on - strand, within MPMX20_02462 at 2603.566 kb on - strand, within MPMX20_02462 at 2603.601 kb on + strand, within MPMX20_02462 at 2603.609 kb on - strand, within MPMX20_02462 at 2603.643 kb on - strand, within MPMX20_02462 at 2603.674 kb on - strand, within MPMX20_02462 at 2603.755 kb on + strand, within MPMX20_02462 at 2603.849 kb on + strand, within MPMX20_02462 at 2603.876 kb on + strand, within MPMX20_02462 at 2603.884 kb on - strand, within MPMX20_02462 at 2603.975 kb on - strand, within MPMX20_02462 at 2603.982 kb on - strand, within MPMX20_02462 at 2604.012 kb on - strand, within MPMX20_02462 at 2604.070 kb on + strand, within MPMX20_02462 at 2604.162 kb on + strand, within MPMX20_02462 at 2604.244 kb on - strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.246 kb on + strand, within MPMX20_02462 at 2604.254 kb on - strand, within MPMX20_02462 at 2604.259 kb on + strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462 at 2604.267 kb on - strand, within MPMX20_02462 at 2604.374 kb on - strand at 2604.473 kb on - strand at 2604.483 kb on - strand, within MPMX20_02463 at 2604.566 kb on - strand, within MPMX20_02463 at 2604.577 kb on + strand, within MPMX20_02463 at 2604.587 kb on + strand, within MPMX20_02463 at 2604.665 kb on - strand, within MPMX20_02463 at 2604.746 kb on + strand, within MPMX20_02463 at 2604.754 kb on - strand, within MPMX20_02463 at 2604.822 kb on + strand, within MPMX20_02463 at 2604.846 kb on + strand, within MPMX20_02463 at 2604.933 kb on - strand, within MPMX20_02463 at 2604.937 kb on + strand, within MPMX20_02463 at 2604.947 kb on + strand, within MPMX20_02463 at 2604.947 kb on + strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2604.955 kb on - strand, within MPMX20_02463 at 2605.048 kb on + strand, within MPMX20_02463 at 2605.158 kb on + strand at 2605.282 kb on + strand at 2605.287 kb on + strand at 2605.297 kb on + strand at 2605.312 kb on + strand, within MPMX20_02464 at 2605.320 kb on - strand, within MPMX20_02464 at 2605.343 kb on - strand, within MPMX20_02464 at 2605.453 kb on + strand, within MPMX20_02464 at 2605.524 kb on + strand, within MPMX20_02464 at 2605.524 kb on + strand, within MPMX20_02464 at 2605.582 kb on - strand, within MPMX20_02464 at 2605.611 kb on - strand, within MPMX20_02464 at 2605.611 kb on - strand, within MPMX20_02464 at 2605.622 kb on - strand, within MPMX20_02464 at 2605.629 kb on + strand, within MPMX20_02464 at 2605.694 kb on - strand, within MPMX20_02464 at 2605.758 kb on + strand, within MPMX20_02464 at 2605.818 kb on - strand, within MPMX20_02464 at 2605.818 kb on - strand, within MPMX20_02464 at 2605.824 kb on + strand, within MPMX20_02464 at 2605.824 kb on + strand, within MPMX20_02464 at 2605.926 kb on + strand, within MPMX20_02464 at 2605.934 kb on - strand, within MPMX20_02464 at 2605.952 kb on + strand, within MPMX20_02464 at 2605.962 kb on + strand, within MPMX20_02464 at 2606.003 kb on + strand, within MPMX20_02464 at 2606.050 kb on + strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.069 kb on - strand, within MPMX20_02464 at 2606.081 kb on + strand, within MPMX20_02464 at 2606.081 kb on + strand, within MPMX20_02464 at 2606.089 kb on - strand, within MPMX20_02464 at 2606.142 kb on + strand, within MPMX20_02464
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 2,603,403 + -0.1 2,603,436 + MPMX20_02462 0.10 +0.6 2,603,462 + MPMX20_02462 0.13 -0.9 2,603,499 + MPMX20_02462 0.16 +0.2 2,603,499 + MPMX20_02462 0.16 -0.4 2,603,499 + MPMX20_02462 0.16 -1.3 2,603,499 + MPMX20_02462 0.16 +0.1 2,603,507 - MPMX20_02462 0.17 +0.2 2,603,507 - MPMX20_02462 0.17 -0.8 2,603,507 - MPMX20_02462 0.17 -1.3 2,603,507 - MPMX20_02462 0.17 -0.2 2,603,507 - MPMX20_02462 0.17 +0.0 2,603,507 - MPMX20_02462 0.17 +0.9 2,603,507 - MPMX20_02462 0.17 +0.0 2,603,507 - MPMX20_02462 0.17 +0.0 2,603,551 - MPMX20_02462 0.21 +0.2 2,603,566 - MPMX20_02462 0.23 +0.1 2,603,566 - MPMX20_02462 0.23 -0.5 2,603,601 + MPMX20_02462 0.26 -2.9 2,603,609 - MPMX20_02462 0.27 -1.5 2,603,643 - MPMX20_02462 0.30 -0.9 2,603,674 - MPMX20_02462 0.33 -0.3 2,603,755 + MPMX20_02462 0.41 -1.6 2,603,849 + MPMX20_02462 0.50 -0.3 2,603,876 + MPMX20_02462 0.52 -2.2 2,603,884 - MPMX20_02462 0.53 -0.0 2,603,975 - MPMX20_02462 0.61 +0.0 2,603,982 - MPMX20_02462 0.62 -0.1 2,604,012 - MPMX20_02462 0.65 +0.2 2,604,070 + MPMX20_02462 0.70 -0.4 2,604,162 + MPMX20_02462 0.79 +1.2 2,604,244 - MPMX20_02462 0.87 +0.2 2,604,246 + MPMX20_02462 0.87 -0.7 2,604,246 + MPMX20_02462 0.87 +1.0 2,604,254 - MPMX20_02462 0.88 +0.2 2,604,259 + MPMX20_02462 0.88 +0.0 2,604,267 - MPMX20_02462 0.89 +0.2 2,604,267 - MPMX20_02462 0.89 -0.2 2,604,374 - +0.3 2,604,473 - -1.0 2,604,483 - MPMX20_02463 0.11 -1.4 2,604,566 - MPMX20_02463 0.22 -0.2 2,604,577 + MPMX20_02463 0.23 -0.6 2,604,587 + MPMX20_02463 0.24 -1.5 2,604,665 - MPMX20_02463 0.34 +1.0 2,604,746 + MPMX20_02463 0.44 +2.2 2,604,754 - MPMX20_02463 0.45 -0.6 2,604,822 + MPMX20_02463 0.54 -1.0 2,604,846 + MPMX20_02463 0.57 +0.6 2,604,933 - MPMX20_02463 0.68 +0.1 2,604,937 + MPMX20_02463 0.69 -0.1 2,604,947 + MPMX20_02463 0.70 +0.4 2,604,947 + MPMX20_02463 0.70 -0.3 2,604,955 - MPMX20_02463 0.71 -0.5 2,604,955 - MPMX20_02463 0.71 -0.4 2,604,955 - MPMX20_02463 0.71 +1.6 2,605,048 + MPMX20_02463 0.83 -1.0 2,605,158 + +0.7 2,605,282 + +0.3 2,605,287 + +0.6 2,605,297 + +1.9 2,605,312 + MPMX20_02464 0.11 -1.4 2,605,320 - MPMX20_02464 0.11 -0.4 2,605,343 - MPMX20_02464 0.13 -0.3 2,605,453 + MPMX20_02464 0.24 -0.7 2,605,524 + MPMX20_02464 0.31 +1.2 2,605,524 + MPMX20_02464 0.31 -0.5 2,605,582 - MPMX20_02464 0.36 +0.8 2,605,611 - MPMX20_02464 0.39 +0.2 2,605,611 - MPMX20_02464 0.39 -1.1 2,605,622 - MPMX20_02464 0.40 +0.2 2,605,629 + MPMX20_02464 0.41 -0.2 2,605,694 - MPMX20_02464 0.47 -0.1 2,605,758 + MPMX20_02464 0.53 -0.1 2,605,818 - MPMX20_02464 0.59 +0.9 2,605,818 - MPMX20_02464 0.59 -0.1 2,605,824 + MPMX20_02464 0.59 +0.6 2,605,824 + MPMX20_02464 0.59 -0.9 2,605,926 + MPMX20_02464 0.69 +4.0 2,605,934 - MPMX20_02464 0.70 +0.4 2,605,952 + MPMX20_02464 0.71 -0.4 2,605,962 + MPMX20_02464 0.72 +0.4 2,606,003 + MPMX20_02464 0.76 -0.3 2,606,050 + MPMX20_02464 0.81 +0.5 2,606,069 - MPMX20_02464 0.82 +1.6 2,606,069 - MPMX20_02464 0.82 -1.1 2,606,069 - MPMX20_02464 0.82 +0.6 2,606,081 + MPMX20_02464 0.84 -1.0 2,606,081 + MPMX20_02464 0.84 +0.6 2,606,089 - MPMX20_02464 0.84 -0.1 2,606,142 + MPMX20_02464 0.89 +1.2
Or see this region's nucleotide sequence