Experiment: 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03447 and MPMX20_03448 are separated by 53 nucleotides MPMX20_03448 and MPMX20_03449 are separated by 314 nucleotides MPMX20_03449 and MPMX20_03450 are separated by 45 nucleotides
MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936
_03447
MPMX20_03448: MPMX20_03448 - Autonomous glycyl radical cofactor, at 3,635,990 to 3,636,373
_03448
MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377
_03449
MPMX20_03450: MPMX20_03450 - putative tRNA/rRNA methyltransferase YfiF, at 3,637,423 to 3,638,508
_03450
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.988 kb on + strand at 3635.988 kb on + strand at 3635.996 kb on - strand at 3635.997 kb on - strand at 3636.009 kb on - strand at 3636.036 kb on + strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.058 kb on - strand, within MPMX20_03448 at 3636.066 kb on - strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.176 kb on - strand, within MPMX20_03448 at 3636.274 kb on + strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.321 kb on + strand, within MPMX20_03448 at 3636.372 kb on - strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.391 kb on - strand at 3636.393 kb on + strand at 3636.401 kb on - strand at 3636.401 kb on - strand at 3636.648 kb on + strand at 3636.655 kb on - strand at 3636.659 kb on + strand at 3636.755 kb on - strand at 3636.790 kb on - strand, within MPMX20_03449 at 3636.934 kb on - strand, within MPMX20_03449 at 3636.935 kb on + strand, within MPMX20_03449 at 3636.992 kb on + strand, within MPMX20_03449 at 3637.000 kb on - strand, within MPMX20_03449 at 3637.015 kb on - strand, within MPMX20_03449 at 3637.067 kb on - strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.233 kb on + strand, within MPMX20_03449 at 3637.241 kb on - strand, within MPMX20_03449 at 3637.370 kb on - strand at 3637.372 kb on + strand at 3637.411 kb on - strand at 3637.420 kb on + strand at 3637.428 kb on - strand at 3637.428 kb on - strand at 3637.456 kb on + strand at 3637.519 kb on + strand at 3637.544 kb on + strand, within MPMX20_03450 at 3637.596 kb on + strand, within MPMX20_03450 at 3637.671 kb on + strand, within MPMX20_03450 at 3637.679 kb on - strand, within MPMX20_03450 at 3637.724 kb on - strand, within MPMX20_03450 at 3637.772 kb on + strand, within MPMX20_03450 at 3637.780 kb on - strand, within MPMX20_03450 at 3637.843 kb on + strand, within MPMX20_03450 at 3637.887 kb on + strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.895 kb on - strand, within MPMX20_03450 at 3637.897 kb on + strand, within MPMX20_03450 at 3637.936 kb on + strand, within MPMX20_03450 at 3637.961 kb on - strand, within MPMX20_03450 at 3637.982 kb on + strand, within MPMX20_03450 at 3637.995 kb on + strand, within MPMX20_03450 at 3638.003 kb on + strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.011 kb on - strand, within MPMX20_03450 at 3638.021 kb on + strand, within MPMX20_03450 at 3638.029 kb on - strand, within MPMX20_03450 at 3638.057 kb on - strand, within MPMX20_03450 at 3638.057 kb on - strand, within MPMX20_03450 at 3638.069 kb on - strand, within MPMX20_03450 at 3638.090 kb on + strand, within MPMX20_03450 at 3638.093 kb on - strand, within MPMX20_03450 at 3638.093 kb on - strand, within MPMX20_03450 at 3638.098 kb on - strand, within MPMX20_03450 at 3638.104 kb on - strand, within MPMX20_03450 at 3638.104 kb on - strand, within MPMX20_03450 at 3638.311 kb on + strand, within MPMX20_03450
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 3,635,755 + MPMX20_03447 0.86 -0.3 3,635,755 + MPMX20_03447 0.86 -0.4 3,635,755 + MPMX20_03447 0.86 -0.6 3,635,755 + MPMX20_03447 0.86 +0.7 3,635,755 + MPMX20_03447 0.86 -0.5 3,635,755 + MPMX20_03447 0.86 -0.4 3,635,755 + MPMX20_03447 0.86 -0.9 3,635,755 + MPMX20_03447 0.86 -2.6 3,635,763 - MPMX20_03447 0.87 -1.7 3,635,763 - MPMX20_03447 0.87 -1.6 3,635,763 - MPMX20_03447 0.87 -1.0 3,635,988 + -2.3 3,635,988 + +0.6 3,635,996 - +1.4 3,635,997 - -0.7 3,636,009 - -0.8 3,636,036 + MPMX20_03448 0.12 +4.7 3,636,042 - MPMX20_03448 0.14 -0.8 3,636,042 - MPMX20_03448 0.14 +0.3 3,636,058 - MPMX20_03448 0.18 -0.4 3,636,066 - MPMX20_03448 0.20 +3.9 3,636,083 + MPMX20_03448 0.24 +0.1 3,636,083 + MPMX20_03448 0.24 +1.0 3,636,176 - MPMX20_03448 0.48 -1.5 3,636,274 + MPMX20_03448 0.74 +0.8 3,636,282 - MPMX20_03448 0.76 +1.0 3,636,282 - MPMX20_03448 0.76 -0.7 3,636,321 + MPMX20_03448 0.86 +2.0 3,636,372 - -0.1 3,636,383 + +0.7 3,636,383 + -0.0 3,636,383 + +1.3 3,636,391 - +1.0 3,636,393 + -0.3 3,636,401 - -1.3 3,636,401 - -0.3 3,636,648 + +0.8 3,636,655 - +0.4 3,636,659 + -0.9 3,636,755 - -0.1 3,636,790 - MPMX20_03449 0.15 -0.0 3,636,934 - MPMX20_03449 0.36 -0.0 3,636,935 + MPMX20_03449 0.36 -2.2 3,636,992 + MPMX20_03449 0.44 -0.2 3,637,000 - MPMX20_03449 0.45 +0.1 3,637,015 - MPMX20_03449 0.47 -0.5 3,637,067 - MPMX20_03449 0.55 -1.0 3,637,099 + MPMX20_03449 0.60 -0.4 3,637,099 + MPMX20_03449 0.60 -0.4 3,637,099 + MPMX20_03449 0.60 -1.3 3,637,233 + MPMX20_03449 0.79 -0.8 3,637,241 - MPMX20_03449 0.80 -0.6 3,637,370 - +1.0 3,637,372 + -1.3 3,637,411 - +0.2 3,637,420 + -0.0 3,637,428 - -1.0 3,637,428 - -0.4 3,637,456 + +1.6 3,637,519 + +2.0 3,637,544 + MPMX20_03450 0.11 -1.5 3,637,596 + MPMX20_03450 0.16 +4.3 3,637,671 + MPMX20_03450 0.23 -0.9 3,637,679 - MPMX20_03450 0.24 -0.5 3,637,724 - MPMX20_03450 0.28 +0.6 3,637,772 + MPMX20_03450 0.32 -0.0 3,637,780 - MPMX20_03450 0.33 -0.9 3,637,843 + MPMX20_03450 0.39 +0.1 3,637,887 + MPMX20_03450 0.43 -0.8 3,637,895 - MPMX20_03450 0.43 +0.3 3,637,895 - MPMX20_03450 0.43 +0.2 3,637,895 - MPMX20_03450 0.43 +1.7 3,637,897 + MPMX20_03450 0.44 -0.4 3,637,936 + MPMX20_03450 0.47 -1.3 3,637,961 - MPMX20_03450 0.50 -0.9 3,637,982 + MPMX20_03450 0.51 -0.6 3,637,995 + MPMX20_03450 0.53 +0.4 3,638,003 + MPMX20_03450 0.53 -1.4 3,638,011 - MPMX20_03450 0.54 -1.2 3,638,011 - MPMX20_03450 0.54 -1.5 3,638,011 - MPMX20_03450 0.54 -0.4 3,638,011 - MPMX20_03450 0.54 +0.5 3,638,021 + MPMX20_03450 0.55 +2.3 3,638,029 - MPMX20_03450 0.56 -0.4 3,638,057 - MPMX20_03450 0.58 +0.6 3,638,057 - MPMX20_03450 0.58 -1.0 3,638,069 - MPMX20_03450 0.59 +0.2 3,638,090 + MPMX20_03450 0.61 -0.6 3,638,093 - MPMX20_03450 0.62 -0.8 3,638,093 - MPMX20_03450 0.62 +0.1 3,638,098 - MPMX20_03450 0.62 -1.1 3,638,104 - MPMX20_03450 0.63 +0.4 3,638,104 - MPMX20_03450 0.63 -0.2 3,638,311 + MPMX20_03450 0.82 -1.2
Or see this region's nucleotide sequence