Experiment: 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01762 and MPMX20_01763 are separated by 74 nucleotides MPMX20_01763 and MPMX20_01764 are separated by 106 nucleotides
MPMX20_01762: MPMX20_01762 - Flagellar hook-associated protein 3, at 1,853,290 to 1,854,243
_01762
MPMX20_01763: MPMX20_01763 - sugar efflux transporter, at 1,854,318 to 1,855,532
_01763
MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577
_01764
Position (kb)
1854
1855
1856 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1853.371 kb on + strand at 1853.553 kb on - strand, within MPMX20_01762 at 1853.563 kb on - strand, within MPMX20_01762 at 1853.753 kb on - strand, within MPMX20_01762 at 1853.753 kb on - strand, within MPMX20_01762 at 1853.778 kb on + strand, within MPMX20_01762 at 1853.778 kb on + strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.786 kb on - strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.815 kb on + strand, within MPMX20_01762 at 1853.823 kb on - strand, within MPMX20_01762 at 1853.823 kb on - strand, within MPMX20_01762 at 1853.849 kb on + strand, within MPMX20_01762 at 1853.857 kb on - strand, within MPMX20_01762 at 1853.862 kb on - strand, within MPMX20_01762 at 1853.867 kb on - strand, within MPMX20_01762 at 1853.878 kb on - strand, within MPMX20_01762 at 1853.967 kb on - strand, within MPMX20_01762 at 1854.075 kb on + strand, within MPMX20_01762 at 1854.083 kb on - strand, within MPMX20_01762 at 1854.094 kb on - strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.096 kb on + strand, within MPMX20_01762 at 1854.114 kb on - strand, within MPMX20_01762 at 1854.245 kb on + strand at 1854.252 kb on - strand at 1854.255 kb on + strand at 1854.342 kb on + strand at 1854.343 kb on - strand at 1854.363 kb on - strand at 1854.375 kb on - strand at 1854.408 kb on + strand at 1854.462 kb on - strand, within MPMX20_01763 at 1854.467 kb on - strand, within MPMX20_01763 at 1854.519 kb on - strand, within MPMX20_01763 at 1854.519 kb on - strand, within MPMX20_01763 at 1854.586 kb on - strand, within MPMX20_01763 at 1854.586 kb on - strand, within MPMX20_01763 at 1854.669 kb on + strand, within MPMX20_01763 at 1854.669 kb on + strand, within MPMX20_01763 at 1854.679 kb on + strand, within MPMX20_01763 at 1854.687 kb on - strand, within MPMX20_01763 at 1854.767 kb on + strand, within MPMX20_01763 at 1854.792 kb on + strand, within MPMX20_01763 at 1854.792 kb on + strand, within MPMX20_01763 at 1854.813 kb on - strand, within MPMX20_01763 at 1854.827 kb on + strand, within MPMX20_01763 at 1854.835 kb on - strand, within MPMX20_01763 at 1854.922 kb on + strand, within MPMX20_01763 at 1854.927 kb on + strand, within MPMX20_01763 at 1854.932 kb on + strand, within MPMX20_01763 at 1854.932 kb on + strand, within MPMX20_01763 at 1854.935 kb on - strand, within MPMX20_01763 at 1854.937 kb on + strand, within MPMX20_01763 at 1854.950 kb on - strand, within MPMX20_01763 at 1854.950 kb on - strand, within MPMX20_01763 at 1855.008 kb on + strand, within MPMX20_01763 at 1855.030 kb on - strand, within MPMX20_01763 at 1855.056 kb on - strand, within MPMX20_01763 at 1855.095 kb on + strand, within MPMX20_01763 at 1855.244 kb on + strand, within MPMX20_01763 at 1855.273 kb on - strand, within MPMX20_01763 at 1855.369 kb on + strand, within MPMX20_01763 at 1855.451 kb on + strand at 1855.519 kb on + strand at 1855.546 kb on + strand at 1855.554 kb on - strand at 1855.588 kb on + strand at 1855.593 kb on + strand at 1855.596 kb on - strand at 1855.675 kb on - strand at 1855.685 kb on + strand at 1855.732 kb on - strand at 1855.744 kb on + strand, within MPMX20_01764 at 1855.884 kb on - strand, within MPMX20_01764 at 1855.914 kb on + strand, within MPMX20_01764 at 1855.961 kb on + strand, within MPMX20_01764 at 1855.969 kb on - strand, within MPMX20_01764 at 1856.007 kb on + strand, within MPMX20_01764 at 1856.015 kb on - strand, within MPMX20_01764 at 1856.076 kb on + strand, within MPMX20_01764 at 1856.120 kb on + strand, within MPMX20_01764 at 1856.138 kb on - strand, within MPMX20_01764 at 1856.140 kb on + strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.162 kb on + strand, within MPMX20_01764 at 1856.240 kb on + strand, within MPMX20_01764 at 1856.305 kb on - strand, within MPMX20_01764 at 1856.356 kb on + strand, within MPMX20_01764 at 1856.364 kb on - strand, within MPMX20_01764 at 1856.365 kb on - strand, within MPMX20_01764
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b remove 1,853,371 + -0.6 1,853,553 - MPMX20_01762 0.28 +0.3 1,853,563 - MPMX20_01762 0.29 -2.2 1,853,753 - MPMX20_01762 0.49 -0.6 1,853,753 - MPMX20_01762 0.49 -0.1 1,853,778 + MPMX20_01762 0.51 -1.1 1,853,778 + MPMX20_01762 0.51 -0.4 1,853,786 - MPMX20_01762 0.52 -1.2 1,853,786 - MPMX20_01762 0.52 +0.4 1,853,786 - MPMX20_01762 0.52 -1.7 1,853,815 + MPMX20_01762 0.55 -1.1 1,853,815 + MPMX20_01762 0.55 -0.6 1,853,815 + MPMX20_01762 0.55 +2.1 1,853,815 + MPMX20_01762 0.55 -0.0 1,853,823 - MPMX20_01762 0.56 -0.5 1,853,823 - MPMX20_01762 0.56 -1.1 1,853,849 + MPMX20_01762 0.59 -2.0 1,853,857 - MPMX20_01762 0.59 +1.1 1,853,862 - MPMX20_01762 0.60 -2.6 1,853,867 - MPMX20_01762 0.60 +0.4 1,853,878 - MPMX20_01762 0.62 -0.4 1,853,967 - MPMX20_01762 0.71 -0.5 1,854,075 + MPMX20_01762 0.82 -0.7 1,854,083 - MPMX20_01762 0.83 +0.8 1,854,094 - MPMX20_01762 0.84 -0.2 1,854,096 + MPMX20_01762 0.84 -0.1 1,854,096 + MPMX20_01762 0.84 +0.5 1,854,096 + MPMX20_01762 0.84 +0.7 1,854,114 - MPMX20_01762 0.86 +0.8 1,854,245 + -1.4 1,854,252 - -0.7 1,854,255 + -1.1 1,854,342 + -1.0 1,854,343 - -1.7 1,854,363 - -1.7 1,854,375 - -0.9 1,854,408 + -1.4 1,854,462 - MPMX20_01763 0.12 +0.8 1,854,467 - MPMX20_01763 0.12 +1.1 1,854,519 - MPMX20_01763 0.17 -0.1 1,854,519 - MPMX20_01763 0.17 -0.0 1,854,586 - MPMX20_01763 0.22 +0.2 1,854,586 - MPMX20_01763 0.22 -2.6 1,854,669 + MPMX20_01763 0.29 +0.3 1,854,669 + MPMX20_01763 0.29 -1.8 1,854,679 + MPMX20_01763 0.30 -0.2 1,854,687 - MPMX20_01763 0.30 +0.5 1,854,767 + MPMX20_01763 0.37 +0.5 1,854,792 + MPMX20_01763 0.39 +0.6 1,854,792 + MPMX20_01763 0.39 +0.6 1,854,813 - MPMX20_01763 0.41 -0.3 1,854,827 + MPMX20_01763 0.42 +0.5 1,854,835 - MPMX20_01763 0.43 +1.3 1,854,922 + MPMX20_01763 0.50 +0.7 1,854,927 + MPMX20_01763 0.50 -0.8 1,854,932 + MPMX20_01763 0.51 -0.4 1,854,932 + MPMX20_01763 0.51 +0.7 1,854,935 - MPMX20_01763 0.51 -0.9 1,854,937 + MPMX20_01763 0.51 -0.2 1,854,950 - MPMX20_01763 0.52 +0.5 1,854,950 - MPMX20_01763 0.52 -1.0 1,855,008 + MPMX20_01763 0.57 -0.3 1,855,030 - MPMX20_01763 0.59 +4.6 1,855,056 - MPMX20_01763 0.61 -0.2 1,855,095 + MPMX20_01763 0.64 -0.1 1,855,244 + MPMX20_01763 0.76 -1.7 1,855,273 - MPMX20_01763 0.79 +0.8 1,855,369 + MPMX20_01763 0.87 -1.3 1,855,451 + -1.1 1,855,519 + -1.8 1,855,546 + -0.9 1,855,554 - +0.6 1,855,588 + +0.4 1,855,593 + -1.1 1,855,596 - +1.4 1,855,675 - +1.5 1,855,685 + +0.3 1,855,732 - -0.9 1,855,744 + MPMX20_01764 0.11 -0.2 1,855,884 - MPMX20_01764 0.26 -1.3 1,855,914 + MPMX20_01764 0.29 -0.9 1,855,961 + MPMX20_01764 0.34 -1.4 1,855,969 - MPMX20_01764 0.35 +1.1 1,856,007 + MPMX20_01764 0.39 +0.3 1,856,015 - MPMX20_01764 0.40 -0.5 1,856,076 + MPMX20_01764 0.47 -0.4 1,856,120 + MPMX20_01764 0.51 -1.8 1,856,138 - MPMX20_01764 0.53 +3.0 1,856,140 + MPMX20_01764 0.53 -0.9 1,856,148 - MPMX20_01764 0.54 +2.1 1,856,148 - MPMX20_01764 0.54 -0.1 1,856,150 + MPMX20_01764 0.54 -0.4 1,856,150 + MPMX20_01764 0.54 -1.0 1,856,162 + MPMX20_01764 0.56 -0.0 1,856,240 + MPMX20_01764 0.64 +2.1 1,856,305 - MPMX20_01764 0.71 -2.1 1,856,356 + MPMX20_01764 0.76 +2.3 1,856,364 - MPMX20_01764 0.77 -0.2 1,856,365 - MPMX20_01764 0.77 -0.0
Or see this region's nucleotide sequence