Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00224

Experiment: 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00222 and MPMX20_00223 are separated by 186 nucleotidesMPMX20_00223 and MPMX20_00224 are separated by 11 nucleotidesMPMX20_00224 and MPMX20_00225 are separated by 43 nucleotides MPMX20_00222: MPMX20_00222 - hypothetical protein, at 231,045 to 231,635 _00222 MPMX20_00223: MPMX20_00223 - DNA-binding protein HU-alpha, at 231,822 to 232,094 _00223 MPMX20_00224: MPMX20_00224 - hypothetical protein, at 232,106 to 232,798 _00224 MPMX20_00225: MPMX20_00225 - Phosphoribosylamine--glycine ligase, at 232,842 to 234,134 _00225 Position (kb) 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 231.179 kb on - strand, within MPMX20_00222at 231.305 kb on + strand, within MPMX20_00222at 231.363 kb on + strand, within MPMX20_00222at 231.532 kb on + strand, within MPMX20_00222at 231.532 kb on + strand, within MPMX20_00222at 231.564 kb on - strand, within MPMX20_00222at 231.608 kb on - strandat 231.707 kb on + strandat 231.805 kb on - strandat 231.837 kb on - strandat 231.876 kb on + strand, within MPMX20_00223at 231.877 kb on - strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.943 kb on + strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 232.183 kb on - strand, within MPMX20_00224at 232.246 kb on + strand, within MPMX20_00224at 232.300 kb on + strand, within MPMX20_00224at 232.329 kb on + strand, within MPMX20_00224at 232.404 kb on + strand, within MPMX20_00224at 232.449 kb on + strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.481 kb on - strand, within MPMX20_00224at 232.540 kb on + strand, within MPMX20_00224at 232.548 kb on - strand, within MPMX20_00224at 232.566 kb on + strand, within MPMX20_00224at 232.574 kb on - strand, within MPMX20_00224at 232.607 kb on + strand, within MPMX20_00224at 232.615 kb on - strand, within MPMX20_00224at 232.622 kb on + strand, within MPMX20_00224at 232.651 kb on - strand, within MPMX20_00224at 232.684 kb on + strand, within MPMX20_00224at 232.692 kb on - strand, within MPMX20_00224at 232.821 kb on + strandat 232.925 kb on + strandat 232.925 kb on + strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.957 kb on + strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.990 kb on - strand, within MPMX20_00225at 233.140 kb on + strand, within MPMX20_00225at 233.149 kb on + strand, within MPMX20_00225at 233.164 kb on + strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.315 kb on + strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.328 kb on - strand, within MPMX20_00225at 233.341 kb on + strand, within MPMX20_00225at 233.348 kb on - strand, within MPMX20_00225at 233.387 kb on + strand, within MPMX20_00225at 233.392 kb on + strand, within MPMX20_00225at 233.400 kb on + strand, within MPMX20_00225at 233.400 kb on - strand, within MPMX20_00225at 233.420 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.741 kb on + strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.747 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Flavobacterium anhuiense SO6b
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231,179 - MPMX20_00222 0.23 +0.3
231,305 + MPMX20_00222 0.44 -0.4
231,363 + MPMX20_00222 0.54 +1.4
231,532 + MPMX20_00222 0.82 +0.3
231,532 + MPMX20_00222 0.82 -0.5
231,564 - MPMX20_00222 0.88 -0.5
231,608 - +0.3
231,707 + -2.1
231,805 - +0.7
231,837 - +1.7
231,876 + MPMX20_00223 0.20 +2.0
231,877 - MPMX20_00223 0.20 +1.3
231,881 + MPMX20_00223 0.22 +0.8
231,881 + MPMX20_00223 0.22 +0.1
231,889 - MPMX20_00223 0.25 -1.7
231,889 - MPMX20_00223 0.25 -0.1
231,889 - MPMX20_00223 0.25 +2.7
231,889 - MPMX20_00223 0.25 -0.8
231,889 - MPMX20_00223 0.25 -0.5
231,943 + MPMX20_00223 0.44 +1.3
231,961 - MPMX20_00223 0.51 +0.7
231,961 - MPMX20_00223 0.51 -0.3
232,183 - MPMX20_00224 0.11 -1.5
232,246 + MPMX20_00224 0.20 +1.4
232,300 + MPMX20_00224 0.28 +4.9
232,329 + MPMX20_00224 0.32 +0.7
232,404 + MPMX20_00224 0.43 +0.9
232,449 + MPMX20_00224 0.49 +0.1
232,457 - MPMX20_00224 0.51 -0.1
232,457 - MPMX20_00224 0.51 -1.1
232,481 - MPMX20_00224 0.54 -1.1
232,540 + MPMX20_00224 0.63 -1.3
232,548 - MPMX20_00224 0.64 +3.4
232,566 + MPMX20_00224 0.66 +0.3
232,574 - MPMX20_00224 0.68 +2.9
232,607 + MPMX20_00224 0.72 -0.9
232,615 - MPMX20_00224 0.73 +0.9
232,622 + MPMX20_00224 0.74 -0.9
232,651 - MPMX20_00224 0.79 +2.4
232,684 + MPMX20_00224 0.83 -0.5
232,692 - MPMX20_00224 0.85 +0.8
232,821 + -1.1
232,925 + -0.9
232,925 + -0.5
232,946 - -2.9
232,946 - -1.5
232,946 - -1.1
232,957 + -0.9
232,965 - +0.1
232,965 - -1.6
232,965 - -0.7
232,982 + MPMX20_00225 0.11 -1.1
232,982 + MPMX20_00225 0.11 -2.7
232,982 + MPMX20_00225 0.11 -1.7
232,982 + MPMX20_00225 0.11 +0.3
232,988 - MPMX20_00225 0.11 -2.1
232,988 - MPMX20_00225 0.11 -2.9
232,990 - MPMX20_00225 0.11 -0.1
233,140 + MPMX20_00225 0.23 -3.0
233,149 + MPMX20_00225 0.24 +1.9
233,164 + MPMX20_00225 0.25 -2.0
233,224 - MPMX20_00225 0.30 -1.6
233,224 - MPMX20_00225 0.30 +1.9
233,315 + MPMX20_00225 0.37 -1.5
233,323 - MPMX20_00225 0.37 -0.7
233,323 - MPMX20_00225 0.37 +0.9
233,328 - MPMX20_00225 0.38 -1.8
233,341 + MPMX20_00225 0.39 +0.9
233,348 - MPMX20_00225 0.39 -1.5
233,387 + MPMX20_00225 0.42 +0.3
233,392 + MPMX20_00225 0.43 -0.5
233,400 + MPMX20_00225 0.43 +0.3
233,400 - MPMX20_00225 0.43 -0.9
233,420 + MPMX20_00225 0.45 -1.9
233,625 + MPMX20_00225 0.61 +0.9
233,625 + MPMX20_00225 0.61 -0.1
233,633 - MPMX20_00225 0.61 -0.9
233,633 - MPMX20_00225 0.61 -0.3
233,633 - MPMX20_00225 0.61 -1.0
233,741 + MPMX20_00225 0.70 -1.1
233,744 - MPMX20_00225 0.70 -1.5
233,744 - MPMX20_00225 0.70 +1.9
233,744 - MPMX20_00225 0.70 -2.7
233,747 + MPMX20_00225 0.70 -0.6
233,787 + MPMX20_00225 0.73 -2.2
233,787 + MPMX20_00225 0.73 -1.1
233,787 + MPMX20_00225 0.73 +0.9
233,787 + MPMX20_00225 0.73 -1.0
233,787 + MPMX20_00225 0.73 -0.8

Or see this region's nucleotide sequence