Experiment: M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04132 and MPMX20_04133 overlap by 1 nucleotides MPMX20_04133 and MPMX20_04134 are separated by 312 nucleotides MPMX20_04134 and MPMX20_04135 are separated by 15 nucleotides MPMX20_04135 and MPMX20_04136 are separated by 289 nucleotides
MPMX20_04132: MPMX20_04132 - Stringent starvation protein B, at 4,333,393 to 4,333,890
_04132
MPMX20_04133: MPMX20_04133 - Stringent starvation protein A, at 4,333,890 to 4,334,528
_04133
MPMX20_04134: MPMX20_04134 - 30S ribosomal protein S9, at 4,334,841 to 4,335,233
_04134
MPMX20_04135: MPMX20_04135 - 50S ribosomal protein L13, at 4,335,249 to 4,335,677
_04135
MPMX20_04136: MPMX20_04136 - Cell division protein ZapE, at 4,335,967 to 4,337,091
_04136
Position (kb)
4334
4335
4336 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4333.869 kb on + strand at 4333.933 kb on - strand at 4333.934 kb on - strand at 4334.018 kb on + strand, within MPMX20_04133 at 4334.025 kb on - strand, within MPMX20_04133 at 4334.029 kb on + strand, within MPMX20_04133 at 4334.029 kb on + strand, within MPMX20_04133 at 4334.062 kb on + strand, within MPMX20_04133 at 4334.190 kb on - strand, within MPMX20_04133 at 4334.268 kb on - strand, within MPMX20_04133 at 4334.296 kb on - strand, within MPMX20_04133 at 4334.363 kb on - strand, within MPMX20_04133 at 4334.449 kb on + strand, within MPMX20_04133 at 4334.457 kb on - strand, within MPMX20_04133 at 4334.457 kb on - strand, within MPMX20_04133 at 4334.575 kb on - strand at 4334.585 kb on - strand at 4334.699 kb on + strand at 4334.699 kb on + strand at 4334.699 kb on + strand at 4334.707 kb on - strand at 4334.707 kb on - strand at 4335.926 kb on + strand at 4335.931 kb on + strand at 4335.938 kb on + strand at 4335.950 kb on - strand at 4335.960 kb on - strand at 4335.960 kb on - strand at 4335.984 kb on + strand at 4335.984 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.072 kb on + strand at 4336.101 kb on + strand, within MPMX20_04136 at 4336.165 kb on - strand, within MPMX20_04136 at 4336.167 kb on - strand, within MPMX20_04136 at 4336.192 kb on - strand, within MPMX20_04136 at 4336.194 kb on + strand, within MPMX20_04136
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030 remove 4,333,869 + -0.3 4,333,933 - -1.0 4,333,934 - +0.2 4,334,018 + MPMX20_04133 0.20 -3.7 4,334,025 - MPMX20_04133 0.21 -1.3 4,334,029 + MPMX20_04133 0.22 -3.3 4,334,029 + MPMX20_04133 0.22 -3.6 4,334,062 + MPMX20_04133 0.27 -2.7 4,334,190 - MPMX20_04133 0.47 -2.9 4,334,268 - MPMX20_04133 0.59 -1.0 4,334,296 - MPMX20_04133 0.64 +1.2 4,334,363 - MPMX20_04133 0.74 -1.4 4,334,449 + MPMX20_04133 0.87 -2.0 4,334,457 - MPMX20_04133 0.89 -1.7 4,334,457 - MPMX20_04133 0.89 +0.6 4,334,575 - +1.2 4,334,585 - -0.5 4,334,699 + -0.2 4,334,699 + +0.2 4,334,699 + -0.4 4,334,707 - +0.2 4,334,707 - +1.8 4,335,926 + +1.6 4,335,931 + +0.7 4,335,938 + -0.3 4,335,950 - +2.2 4,335,960 - +0.4 4,335,960 - +0.4 4,335,984 + +0.2 4,335,984 + -0.2 4,336,058 + -0.4 4,336,058 + -2.1 4,336,058 + -1.1 4,336,058 + -0.0 4,336,066 - +0.5 4,336,066 - -1.2 4,336,066 - -0.4 4,336,066 - -0.6 4,336,066 - +1.2 4,336,066 - -1.2 4,336,066 - -0.8 4,336,072 + -1.3 4,336,101 + MPMX20_04136 0.12 +0.7 4,336,165 - MPMX20_04136 0.18 -0.8 4,336,167 - MPMX20_04136 0.18 -1.3 4,336,192 - MPMX20_04136 0.20 +0.6 4,336,194 + MPMX20_04136 0.20 -1.5
Or see this region's nucleotide sequence