Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04116

Experiment: M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04115 and MPMX20_04116 are separated by 135 nucleotidesMPMX20_04116 and MPMX20_04117 overlap by 1 nucleotides MPMX20_04115: MPMX20_04115 - Aerobic respiration control sensor protein ArcB, at 4,305,984 to 4,308,317 _04115 MPMX20_04116: MPMX20_04116 - Lipopolysaccharide export system permease protein LptG, at 4,308,453 to 4,309,535 _04116 MPMX20_04117: MPMX20_04117 - Lipopolysaccharide export system permease protein LptF, at 4,309,535 to 4,310,635 _04117 Position (kb) 4308 4309 4310Strain fitness (log2 ratio) -2 -1 0 1 2at 4307.486 kb on + strand, within MPMX20_04115at 4307.588 kb on + strand, within MPMX20_04115at 4307.627 kb on + strand, within MPMX20_04115at 4307.630 kb on + strand, within MPMX20_04115at 4307.630 kb on + strand, within MPMX20_04115at 4307.630 kb on + strand, within MPMX20_04115at 4307.630 kb on + strand, within MPMX20_04115at 4307.630 kb on + strand, within MPMX20_04115at 4307.638 kb on - strand, within MPMX20_04115at 4307.638 kb on - strand, within MPMX20_04115at 4307.638 kb on - strand, within MPMX20_04115at 4307.869 kb on + strand, within MPMX20_04115at 4307.869 kb on + strand, within MPMX20_04115at 4307.877 kb on - strand, within MPMX20_04115at 4307.877 kb on - strand, within MPMX20_04115at 4307.884 kb on + strand, within MPMX20_04115at 4307.938 kb on + strand, within MPMX20_04115at 4307.938 kb on + strand, within MPMX20_04115at 4307.946 kb on - strand, within MPMX20_04115at 4307.983 kb on + strand, within MPMX20_04115at 4308.050 kb on + strand, within MPMX20_04115at 4308.090 kb on - strandat 4308.148 kb on - strandat 4308.169 kb on + strandat 4308.171 kb on - strandat 4308.171 kb on - strandat 4308.171 kb on - strandat 4308.189 kb on + strandat 4308.231 kb on - strandat 4308.268 kb on - strandat 4308.291 kb on - strandat 4308.291 kb on - strandat 4308.291 kb on - strandat 4308.291 kb on - strandat 4308.335 kb on - strandat 4308.378 kb on - strandat 4308.380 kb on - strandat 4308.418 kb on - strandat 4308.447 kb on + strandat 4308.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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4,307,486 + MPMX20_04115 0.64 +0.6
4,307,588 + MPMX20_04115 0.69 +2.2
4,307,627 + MPMX20_04115 0.70 +1.3
4,307,630 + MPMX20_04115 0.71 -0.9
4,307,630 + MPMX20_04115 0.71 +1.4
4,307,630 + MPMX20_04115 0.71 +0.8
4,307,630 + MPMX20_04115 0.71 +0.2
4,307,630 + MPMX20_04115 0.71 +0.4
4,307,638 - MPMX20_04115 0.71 +2.2
4,307,638 - MPMX20_04115 0.71 +1.8
4,307,638 - MPMX20_04115 0.71 +1.2
4,307,869 + MPMX20_04115 0.81 +0.6
4,307,869 + MPMX20_04115 0.81 +0.6
4,307,877 - MPMX20_04115 0.81 +2.6
4,307,877 - MPMX20_04115 0.81 +0.6
4,307,884 + MPMX20_04115 0.81 +0.6
4,307,938 + MPMX20_04115 0.84 +1.2
4,307,938 + MPMX20_04115 0.84 +1.6
4,307,946 - MPMX20_04115 0.84 +2.2
4,307,983 + MPMX20_04115 0.86 +0.3
4,308,050 + MPMX20_04115 0.89 +1.6
4,308,090 - +0.2
4,308,148 - +1.0
4,308,169 + +1.2
4,308,171 - -0.8
4,308,171 - -1.4
4,308,171 - +0.6
4,308,189 + -0.3
4,308,231 - -0.8
4,308,268 - +2.2
4,308,291 - +1.3
4,308,291 - +0.2
4,308,291 - -2.4
4,308,291 - +2.2
4,308,335 - -1.3
4,308,378 - -0.5
4,308,380 - +0.2
4,308,418 - -1.1
4,308,447 + +1.2
4,308,481 - -1.0

Or see this region's nucleotide sequence