Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00454

Experiment: M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00452 and MPMX20_00453 are separated by 85 nucleotidesMPMX20_00453 and MPMX20_00454 are separated by 74 nucleotidesMPMX20_00454 and MPMX20_00455 are separated by 56 nucleotides MPMX20_00452: MPMX20_00452 - tRNA dimethylallyltransferase, at 467,094 to 468,044 _00452 MPMX20_00453: MPMX20_00453 - RNA-binding protein Hfq, at 468,130 to 468,441 _00453 MPMX20_00454: MPMX20_00454 - GTPase HflX, at 468,516 to 469,796 _00454 MPMX20_00455: MPMX20_00455 - Modulator of FtsH protease HflK, at 469,853 to 471,115 _00455 Position (kb) 468 469 470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 467.516 kb on - strand, within MPMX20_00452at 467.516 kb on - strand, within MPMX20_00452at 467.540 kb on + strand, within MPMX20_00452at 467.545 kb on + strand, within MPMX20_00452at 467.565 kb on + strand, within MPMX20_00452at 467.573 kb on - strand, within MPMX20_00452at 467.573 kb on - strand, within MPMX20_00452at 467.656 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.718 kb on - strand, within MPMX20_00452at 467.798 kb on - strand, within MPMX20_00452at 467.800 kb on + strand, within MPMX20_00452at 467.836 kb on + strand, within MPMX20_00452at 467.847 kb on + strand, within MPMX20_00452at 467.860 kb on - strand, within MPMX20_00452at 467.923 kb on + strand, within MPMX20_00452at 467.939 kb on + strand, within MPMX20_00452at 467.965 kb on + strandat 467.967 kb on + strandat 467.967 kb on + strandat 468.047 kb on + strandat 468.047 kb on + strandat 468.047 kb on - strandat 468.060 kb on - strandat 468.092 kb on + strandat 468.092 kb on + strandat 468.154 kb on + strandat 468.215 kb on + strand, within MPMX20_00453at 468.223 kb on - strand, within MPMX20_00453at 468.242 kb on + strand, within MPMX20_00453at 468.382 kb on + strand, within MPMX20_00453at 468.399 kb on + strand, within MPMX20_00453at 468.415 kb on + strandat 468.423 kb on - strandat 468.428 kb on - strandat 468.461 kb on - strandat 468.477 kb on - strandat 468.555 kb on + strandat 468.568 kb on - strandat 468.568 kb on - strandat 468.600 kb on - strandat 468.619 kb on + strandat 468.695 kb on + strand, within MPMX20_00454at 468.696 kb on + strand, within MPMX20_00454at 468.767 kb on + strand, within MPMX20_00454at 468.774 kb on + strand, within MPMX20_00454at 468.775 kb on - strand, within MPMX20_00454at 468.878 kb on + strand, within MPMX20_00454at 468.878 kb on + strand, within MPMX20_00454at 468.905 kb on - strand, within MPMX20_00454at 468.907 kb on + strand, within MPMX20_00454at 468.939 kb on - strand, within MPMX20_00454at 468.992 kb on + strand, within MPMX20_00454at 469.024 kb on + strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454at 469.065 kb on - strand, within MPMX20_00454at 469.091 kb on + strand, within MPMX20_00454at 469.105 kb on + strand, within MPMX20_00454at 469.125 kb on + strand, within MPMX20_00454at 469.133 kb on - strand, within MPMX20_00454at 469.161 kb on - strand, within MPMX20_00454at 469.172 kb on + strand, within MPMX20_00454at 469.186 kb on - strand, within MPMX20_00454at 469.191 kb on + strand, within MPMX20_00454at 469.199 kb on - strand, within MPMX20_00454at 469.199 kb on - strand, within MPMX20_00454at 469.236 kb on - strand, within MPMX20_00454at 469.270 kb on + strand, within MPMX20_00454at 469.275 kb on + strand, within MPMX20_00454at 469.312 kb on + strand, within MPMX20_00454at 469.321 kb on - strand, within MPMX20_00454at 469.364 kb on + strand, within MPMX20_00454at 469.517 kb on + strand, within MPMX20_00454at 469.638 kb on + strand, within MPMX20_00454at 469.670 kb on + strandat 469.693 kb on + strandat 469.702 kb on - strandat 469.702 kb on - strandat 469.719 kb on - strandat 469.747 kb on + strandat 469.768 kb on + strandat 469.790 kb on - strandat 470.050 kb on + strand, within MPMX20_00455at 470.079 kb on - strand, within MPMX20_00455at 470.093 kb on + strand, within MPMX20_00455at 470.130 kb on - strand, within MPMX20_00455at 470.140 kb on + strand, within MPMX20_00455at 470.203 kb on + strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.388 kb on + strand, within MPMX20_00455at 470.428 kb on + strand, within MPMX20_00455at 470.501 kb on - strand, within MPMX20_00455at 470.563 kb on + strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.590 kb on + strand, within MPMX20_00455at 470.665 kb on + strand, within MPMX20_00455at 470.668 kb on - strand, within MPMX20_00455at 470.675 kb on + strand, within MPMX20_00455at 470.694 kb on + strand, within MPMX20_00455at 470.702 kb on - strand, within MPMX20_00455at 470.735 kb on + strand, within MPMX20_00455at 470.753 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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467,516 - MPMX20_00452 0.44 -0.7
467,516 - MPMX20_00452 0.44 -0.4
467,540 + MPMX20_00452 0.47 -0.8
467,545 + MPMX20_00452 0.47 +0.1
467,565 + MPMX20_00452 0.50 -0.7
467,573 - MPMX20_00452 0.50 -0.2
467,573 - MPMX20_00452 0.50 -1.8
467,656 + MPMX20_00452 0.59 -2.2
467,710 + MPMX20_00452 0.65 -1.5
467,710 + MPMX20_00452 0.65 +0.1
467,710 + MPMX20_00452 0.65 -0.6
467,710 + MPMX20_00452 0.65 -0.4
467,718 - MPMX20_00452 0.66 +1.1
467,798 - MPMX20_00452 0.74 +0.6
467,800 + MPMX20_00452 0.74 -0.8
467,836 + MPMX20_00452 0.78 -0.4
467,847 + MPMX20_00452 0.79 -2.4
467,860 - MPMX20_00452 0.81 +0.3
467,923 + MPMX20_00452 0.87 -0.4
467,939 + MPMX20_00452 0.89 -0.5
467,965 + -1.9
467,967 + -0.2
467,967 + -1.3
468,047 + -1.4
468,047 + +0.2
468,047 - -1.2
468,060 - -0.2
468,092 + +2.1
468,092 + -1.0
468,154 + -1.7
468,215 + MPMX20_00453 0.27 -0.2
468,223 - MPMX20_00453 0.30 -2.8
468,242 + MPMX20_00453 0.36 +0.3
468,382 + MPMX20_00453 0.81 -1.9
468,399 + MPMX20_00453 0.86 +0.8
468,415 + -3.0
468,423 - -0.2
468,428 - -2.0
468,461 - -0.4
468,477 - -1.7
468,555 + +2.1
468,568 - +1.2
468,568 - -2.8
468,600 - -0.2
468,619 + -0.4
468,695 + MPMX20_00454 0.14 -0.2
468,696 + MPMX20_00454 0.14 -1.0
468,767 + MPMX20_00454 0.20 -0.4
468,774 + MPMX20_00454 0.20 +0.1
468,775 - MPMX20_00454 0.20 -1.1
468,878 + MPMX20_00454 0.28 -1.6
468,878 + MPMX20_00454 0.28 -0.2
468,905 - MPMX20_00454 0.30 +1.1
468,907 + MPMX20_00454 0.31 -0.5
468,939 - MPMX20_00454 0.33 -1.2
468,992 + MPMX20_00454 0.37 +0.1
469,024 + MPMX20_00454 0.40 +1.1
469,032 - MPMX20_00454 0.40 -1.2
469,032 - MPMX20_00454 0.40 -2.2
469,065 - MPMX20_00454 0.43 -2.0
469,091 + MPMX20_00454 0.45 -0.1
469,105 + MPMX20_00454 0.46 -1.4
469,125 + MPMX20_00454 0.48 +0.4
469,133 - MPMX20_00454 0.48 -1.1
469,161 - MPMX20_00454 0.50 -1.0
469,172 + MPMX20_00454 0.51 +1.1
469,186 - MPMX20_00454 0.52 -0.5
469,191 + MPMX20_00454 0.53 +0.1
469,199 - MPMX20_00454 0.53 -2.9
469,199 - MPMX20_00454 0.53 -3.2
469,236 - MPMX20_00454 0.56 -1.6
469,270 + MPMX20_00454 0.59 +0.2
469,275 + MPMX20_00454 0.59 -0.6
469,312 + MPMX20_00454 0.62 -1.0
469,321 - MPMX20_00454 0.63 -1.0
469,364 + MPMX20_00454 0.66 +0.6
469,517 + MPMX20_00454 0.78 -1.1
469,638 + MPMX20_00454 0.88 -0.7
469,670 + +0.4
469,693 + +0.6
469,702 - -0.7
469,702 - +2.1
469,719 - -3.5
469,747 + +2.1
469,768 + -1.7
469,790 - -0.4
470,050 + MPMX20_00455 0.16 -1.0
470,079 - MPMX20_00455 0.18 -1.3
470,093 + MPMX20_00455 0.19 -1.4
470,130 - MPMX20_00455 0.22 -0.2
470,140 + MPMX20_00455 0.23 -2.3
470,203 + MPMX20_00455 0.28 -1.0
470,312 - MPMX20_00455 0.36 -2.1
470,312 - MPMX20_00455 0.36 -0.4
470,388 + MPMX20_00455 0.42 -2.7
470,428 + MPMX20_00455 0.46 -1.8
470,501 - MPMX20_00455 0.51 -2.1
470,563 + MPMX20_00455 0.56 -0.4
470,571 - MPMX20_00455 0.57 -3.1
470,571 - MPMX20_00455 0.57 -0.8
470,590 + MPMX20_00455 0.58 -0.6
470,665 + MPMX20_00455 0.64 -1.5
470,668 - MPMX20_00455 0.65 -1.9
470,675 + MPMX20_00455 0.65 -3.2
470,694 + MPMX20_00455 0.67 -0.9
470,702 - MPMX20_00455 0.67 -1.3
470,735 + MPMX20_00455 0.70 -0.9
470,753 + MPMX20_00455 0.71 -0.3
470,758 + MPMX20_00455 0.72 -0.9
470,758 + MPMX20_00455 0.72 -0.2
470,758 + MPMX20_00455 0.72 -2.6
470,758 + MPMX20_00455 0.72 -0.8

Or see this region's nucleotide sequence