Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04604 and MPMX20_04605 are separated by 75 nucleotides MPMX20_04605 and MPMX20_04606 are separated by 68 nucleotides MPMX20_04606 and MPMX20_04607 overlap by 4 nucleotides MPMX20_04607 and MPMX20_04608 are separated by 77 nucleotides MPMX20_04608 and MPMX20_04609 are separated by 67 nucleotides
MPMX20_04604: MPMX20_04604 - Stress response kinase A, at 4,821,958 to 4,822,944
_04604
MPMX20_04605: MPMX20_04605 - Protein YihD, at 4,823,020 to 4,823,289
_04605
MPMX20_04606: MPMX20_04606 - Molybdenum cofactor guanylyltransferase, at 4,823,358 to 4,823,942
_04606
MPMX20_04607: MPMX20_04607 - Molybdopterin-guanine dinucleotide biosynthesis adapter protein, at 4,823,939 to 4,824,442
_04607
MPMX20_04608: MPMX20_04608 - 5S ribosomal RNA, at 4,824,520 to 4,824,630
_04608
MPMX20_04609: MPMX20_04609 - 23S ribosomal RNA, at 4,824,698 to 4,827,601
_04609
Position (kb)
4823
4824
4825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4822.950 kb on - strand at 4823.114 kb on - strand, within MPMX20_04605 at 4823.145 kb on - strand, within MPMX20_04605 at 4823.165 kb on - strand, within MPMX20_04605 at 4823.166 kb on - strand, within MPMX20_04605 at 4823.216 kb on + strand, within MPMX20_04605 at 4823.225 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.254 kb on - strand, within MPMX20_04605 at 4823.290 kb on - strand at 4823.299 kb on - strand at 4823.318 kb on + strand at 4823.318 kb on + strand at 4823.326 kb on + strand at 4823.326 kb on - strand at 4823.391 kb on - strand at 4823.396 kb on - strand at 4823.426 kb on + strand, within MPMX20_04606 at 4823.434 kb on - strand, within MPMX20_04606 at 4823.451 kb on - strand, within MPMX20_04606 at 4823.452 kb on - strand, within MPMX20_04606 at 4823.495 kb on + strand, within MPMX20_04606 at 4823.495 kb on + strand, within MPMX20_04606 at 4823.503 kb on - strand, within MPMX20_04606 at 4823.503 kb on - strand, within MPMX20_04606 at 4823.533 kb on - strand, within MPMX20_04606 at 4823.632 kb on + strand, within MPMX20_04606 at 4823.632 kb on - strand, within MPMX20_04606 at 4823.638 kb on + strand, within MPMX20_04606 at 4823.650 kb on + strand, within MPMX20_04606 at 4823.674 kb on + strand, within MPMX20_04606 at 4823.702 kb on + strand, within MPMX20_04606 at 4823.732 kb on - strand, within MPMX20_04606 at 4823.763 kb on + strand, within MPMX20_04606 at 4823.776 kb on - strand, within MPMX20_04606 at 4823.819 kb on - strand, within MPMX20_04606 at 4823.963 kb on + strand at 4823.968 kb on + strand at 4824.006 kb on + strand, within MPMX20_04607 at 4824.093 kb on + strand, within MPMX20_04607 at 4824.093 kb on + strand, within MPMX20_04607 at 4824.093 kb on + strand, within MPMX20_04607 at 4824.093 kb on + strand, within MPMX20_04607 at 4824.101 kb on - strand, within MPMX20_04607 at 4824.127 kb on - strand, within MPMX20_04607 at 4824.127 kb on - strand, within MPMX20_04607 at 4824.140 kb on + strand, within MPMX20_04607 at 4824.153 kb on - strand, within MPMX20_04607 at 4824.153 kb on - strand, within MPMX20_04607 at 4824.224 kb on + strand, within MPMX20_04607 at 4824.291 kb on - strand, within MPMX20_04607 at 4824.291 kb on - strand, within MPMX20_04607 at 4824.308 kb on - strand, within MPMX20_04607 at 4824.308 kb on - strand, within MPMX20_04607 at 4824.359 kb on + strand, within MPMX20_04607 at 4824.367 kb on - strand, within MPMX20_04607 at 4824.367 kb on - strand, within MPMX20_04607 at 4824.396 kb on + strand at 4824.396 kb on + strand at 4824.396 kb on + strand at 4824.445 kb on - strand at 4824.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030 remove 4,822,950 - +0.2 4,823,114 - MPMX20_04605 0.35 -0.3 4,823,145 - MPMX20_04605 0.46 +1.1 4,823,165 - MPMX20_04605 0.54 -0.6 4,823,166 - MPMX20_04605 0.54 -0.4 4,823,216 + MPMX20_04605 0.73 +1.4 4,823,225 - MPMX20_04605 0.76 +1.1 4,823,254 - MPMX20_04605 0.87 -0.7 4,823,254 - MPMX20_04605 0.87 -0.6 4,823,254 - MPMX20_04605 0.87 +1.0 4,823,254 - MPMX20_04605 0.87 +0.0 4,823,254 - MPMX20_04605 0.87 -0.4 4,823,254 - MPMX20_04605 0.87 -0.6 4,823,290 - +0.4 4,823,299 - -1.0 4,823,318 + -1.2 4,823,318 + -0.0 4,823,326 + +0.2 4,823,326 - -0.1 4,823,391 - +0.9 4,823,396 - +0.2 4,823,426 + MPMX20_04606 0.12 -0.6 4,823,434 - MPMX20_04606 0.13 +0.2 4,823,451 - MPMX20_04606 0.16 -0.4 4,823,452 - MPMX20_04606 0.16 -0.2 4,823,495 + MPMX20_04606 0.23 -1.8 4,823,495 + MPMX20_04606 0.23 +0.4 4,823,503 - MPMX20_04606 0.25 +0.0 4,823,503 - MPMX20_04606 0.25 -1.7 4,823,533 - MPMX20_04606 0.30 -0.3 4,823,632 + MPMX20_04606 0.47 +1.6 4,823,632 - MPMX20_04606 0.47 +1.2 4,823,638 + MPMX20_04606 0.48 +1.0 4,823,650 + MPMX20_04606 0.50 -0.1 4,823,674 + MPMX20_04606 0.54 +2.6 4,823,702 + MPMX20_04606 0.59 +0.3 4,823,732 - MPMX20_04606 0.64 +1.2 4,823,763 + MPMX20_04606 0.69 -1.0 4,823,776 - MPMX20_04606 0.71 -0.0 4,823,819 - MPMX20_04606 0.79 -0.2 4,823,963 + +0.2 4,823,968 + -0.1 4,824,006 + MPMX20_04607 0.13 +0.1 4,824,093 + MPMX20_04607 0.31 +0.0 4,824,093 + MPMX20_04607 0.31 +1.3 4,824,093 + MPMX20_04607 0.31 -0.2 4,824,093 + MPMX20_04607 0.31 +0.1 4,824,101 - MPMX20_04607 0.32 +0.4 4,824,127 - MPMX20_04607 0.37 +0.3 4,824,127 - MPMX20_04607 0.37 -0.7 4,824,140 + MPMX20_04607 0.40 +1.6 4,824,153 - MPMX20_04607 0.42 -1.0 4,824,153 - MPMX20_04607 0.42 +1.1 4,824,224 + MPMX20_04607 0.57 -0.2 4,824,291 - MPMX20_04607 0.70 +3.8 4,824,291 - MPMX20_04607 0.70 -2.9 4,824,308 - MPMX20_04607 0.73 +0.4 4,824,308 - MPMX20_04607 0.73 +0.1 4,824,359 + MPMX20_04607 0.83 -1.1 4,824,367 - MPMX20_04607 0.85 -0.9 4,824,367 - MPMX20_04607 0.85 +0.4 4,824,396 + +1.2 4,824,396 + -0.4 4,824,396 + +0.9 4,824,445 - +2.5 4,824,445 - +0.7
Or see this region's nucleotide sequence