Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04607

Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04604 and MPMX20_04605 are separated by 75 nucleotidesMPMX20_04605 and MPMX20_04606 are separated by 68 nucleotidesMPMX20_04606 and MPMX20_04607 overlap by 4 nucleotidesMPMX20_04607 and MPMX20_04608 are separated by 77 nucleotidesMPMX20_04608 and MPMX20_04609 are separated by 67 nucleotides MPMX20_04604: MPMX20_04604 - Stress response kinase A, at 4,821,958 to 4,822,944 _04604 MPMX20_04605: MPMX20_04605 - Protein YihD, at 4,823,020 to 4,823,289 _04605 MPMX20_04606: MPMX20_04606 - Molybdenum cofactor guanylyltransferase, at 4,823,358 to 4,823,942 _04606 MPMX20_04607: MPMX20_04607 - Molybdopterin-guanine dinucleotide biosynthesis adapter protein, at 4,823,939 to 4,824,442 _04607 MPMX20_04608: MPMX20_04608 - 5S ribosomal RNA, at 4,824,520 to 4,824,630 _04608 MPMX20_04609: MPMX20_04609 - 23S ribosomal RNA, at 4,824,698 to 4,827,601 _04609 Position (kb) 4823 4824 4825Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4822.950 kb on - strandat 4823.114 kb on - strand, within MPMX20_04605at 4823.145 kb on - strand, within MPMX20_04605at 4823.165 kb on - strand, within MPMX20_04605at 4823.166 kb on - strand, within MPMX20_04605at 4823.216 kb on + strand, within MPMX20_04605at 4823.225 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.254 kb on - strand, within MPMX20_04605at 4823.290 kb on - strandat 4823.299 kb on - strandat 4823.318 kb on + strandat 4823.318 kb on + strandat 4823.326 kb on + strandat 4823.326 kb on - strandat 4823.391 kb on - strandat 4823.396 kb on - strandat 4823.426 kb on + strand, within MPMX20_04606at 4823.434 kb on - strand, within MPMX20_04606at 4823.451 kb on - strand, within MPMX20_04606at 4823.452 kb on - strand, within MPMX20_04606at 4823.495 kb on + strand, within MPMX20_04606at 4823.495 kb on + strand, within MPMX20_04606at 4823.503 kb on - strand, within MPMX20_04606at 4823.503 kb on - strand, within MPMX20_04606at 4823.533 kb on - strand, within MPMX20_04606at 4823.632 kb on + strand, within MPMX20_04606at 4823.632 kb on - strand, within MPMX20_04606at 4823.638 kb on + strand, within MPMX20_04606at 4823.650 kb on + strand, within MPMX20_04606at 4823.674 kb on + strand, within MPMX20_04606at 4823.702 kb on + strand, within MPMX20_04606at 4823.732 kb on - strand, within MPMX20_04606at 4823.763 kb on + strand, within MPMX20_04606at 4823.776 kb on - strand, within MPMX20_04606at 4823.819 kb on - strand, within MPMX20_04606at 4823.963 kb on + strandat 4823.968 kb on + strandat 4824.006 kb on + strand, within MPMX20_04607at 4824.093 kb on + strand, within MPMX20_04607at 4824.093 kb on + strand, within MPMX20_04607at 4824.093 kb on + strand, within MPMX20_04607at 4824.093 kb on + strand, within MPMX20_04607at 4824.101 kb on - strand, within MPMX20_04607at 4824.127 kb on - strand, within MPMX20_04607at 4824.127 kb on - strand, within MPMX20_04607at 4824.140 kb on + strand, within MPMX20_04607at 4824.153 kb on - strand, within MPMX20_04607at 4824.153 kb on - strand, within MPMX20_04607at 4824.224 kb on + strand, within MPMX20_04607at 4824.291 kb on - strand, within MPMX20_04607at 4824.291 kb on - strand, within MPMX20_04607at 4824.308 kb on - strand, within MPMX20_04607at 4824.308 kb on - strand, within MPMX20_04607at 4824.359 kb on + strand, within MPMX20_04607at 4824.367 kb on - strand, within MPMX20_04607at 4824.367 kb on - strand, within MPMX20_04607at 4824.396 kb on + strandat 4824.396 kb on + strandat 4824.396 kb on + strandat 4824.445 kb on - strandat 4824.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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4,822,950 - +0.2
4,823,114 - MPMX20_04605 0.35 -0.3
4,823,145 - MPMX20_04605 0.46 +1.1
4,823,165 - MPMX20_04605 0.54 -0.6
4,823,166 - MPMX20_04605 0.54 -0.4
4,823,216 + MPMX20_04605 0.73 +1.4
4,823,225 - MPMX20_04605 0.76 +1.1
4,823,254 - MPMX20_04605 0.87 -0.7
4,823,254 - MPMX20_04605 0.87 -0.6
4,823,254 - MPMX20_04605 0.87 +1.0
4,823,254 - MPMX20_04605 0.87 +0.0
4,823,254 - MPMX20_04605 0.87 -0.4
4,823,254 - MPMX20_04605 0.87 -0.6
4,823,290 - +0.4
4,823,299 - -1.0
4,823,318 + -1.2
4,823,318 + -0.0
4,823,326 + +0.2
4,823,326 - -0.1
4,823,391 - +0.9
4,823,396 - +0.2
4,823,426 + MPMX20_04606 0.12 -0.6
4,823,434 - MPMX20_04606 0.13 +0.2
4,823,451 - MPMX20_04606 0.16 -0.4
4,823,452 - MPMX20_04606 0.16 -0.2
4,823,495 + MPMX20_04606 0.23 -1.8
4,823,495 + MPMX20_04606 0.23 +0.4
4,823,503 - MPMX20_04606 0.25 +0.0
4,823,503 - MPMX20_04606 0.25 -1.7
4,823,533 - MPMX20_04606 0.30 -0.3
4,823,632 + MPMX20_04606 0.47 +1.6
4,823,632 - MPMX20_04606 0.47 +1.2
4,823,638 + MPMX20_04606 0.48 +1.0
4,823,650 + MPMX20_04606 0.50 -0.1
4,823,674 + MPMX20_04606 0.54 +2.6
4,823,702 + MPMX20_04606 0.59 +0.3
4,823,732 - MPMX20_04606 0.64 +1.2
4,823,763 + MPMX20_04606 0.69 -1.0
4,823,776 - MPMX20_04606 0.71 -0.0
4,823,819 - MPMX20_04606 0.79 -0.2
4,823,963 + +0.2
4,823,968 + -0.1
4,824,006 + MPMX20_04607 0.13 +0.1
4,824,093 + MPMX20_04607 0.31 +0.0
4,824,093 + MPMX20_04607 0.31 +1.3
4,824,093 + MPMX20_04607 0.31 -0.2
4,824,093 + MPMX20_04607 0.31 +0.1
4,824,101 - MPMX20_04607 0.32 +0.4
4,824,127 - MPMX20_04607 0.37 +0.3
4,824,127 - MPMX20_04607 0.37 -0.7
4,824,140 + MPMX20_04607 0.40 +1.6
4,824,153 - MPMX20_04607 0.42 -1.0
4,824,153 - MPMX20_04607 0.42 +1.1
4,824,224 + MPMX20_04607 0.57 -0.2
4,824,291 - MPMX20_04607 0.70 +3.8
4,824,291 - MPMX20_04607 0.70 -2.9
4,824,308 - MPMX20_04607 0.73 +0.4
4,824,308 - MPMX20_04607 0.73 +0.1
4,824,359 + MPMX20_04607 0.83 -1.1
4,824,367 - MPMX20_04607 0.85 -0.9
4,824,367 - MPMX20_04607 0.85 +0.4
4,824,396 + +1.2
4,824,396 + -0.4
4,824,396 + +0.9
4,824,445 - +2.5
4,824,445 - +0.7

Or see this region's nucleotide sequence