Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04168

Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04167 and MPMX20_04168 are separated by 137 nucleotidesMPMX20_04168 and MPMX20_04169 are separated by 330 nucleotides MPMX20_04167: MPMX20_04167 - Ribosomal protein L11 methyltransferase, at 4,369,759 to 4,370,640 _04167 MPMX20_04168: MPMX20_04168 - Carbonic anhydrase, at 4,370,778 to 4,371,518 _04168 MPMX20_04169: MPMX20_04169 - tRNA-dihydrouridine synthase B, at 4,371,849 to 4,372,814 _04169 Position (kb) 4370 4371 4372Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4369.780 kb on - strandat 4369.809 kb on + strandat 4369.817 kb on - strandat 4369.817 kb on - strandat 4369.822 kb on - strandat 4369.840 kb on + strandat 4369.919 kb on - strand, within MPMX20_04167at 4369.989 kb on + strand, within MPMX20_04167at 4370.219 kb on + strand, within MPMX20_04167at 4370.338 kb on + strand, within MPMX20_04167at 4370.346 kb on - strand, within MPMX20_04167at 4370.346 kb on - strand, within MPMX20_04167at 4370.360 kb on - strand, within MPMX20_04167at 4370.392 kb on - strand, within MPMX20_04167at 4370.412 kb on + strand, within MPMX20_04167at 4370.412 kb on + strand, within MPMX20_04167at 4370.492 kb on - strand, within MPMX20_04167at 4370.586 kb on + strandat 4370.655 kb on + strandat 4370.655 kb on + strandat 4370.663 kb on - strandat 4370.667 kb on + strandat 4370.673 kb on - strandat 4370.675 kb on - strandat 4370.681 kb on + strandat 4370.744 kb on + strandat 4370.763 kb on - strandat 4370.818 kb on + strandat 4370.829 kb on + strandat 4370.829 kb on + strandat 4370.837 kb on - strandat 4370.843 kb on - strandat 4370.847 kb on - strandat 4370.849 kb on - strandat 4370.857 kb on + strand, within MPMX20_04168at 4370.862 kb on + strand, within MPMX20_04168at 4370.894 kb on + strand, within MPMX20_04168at 4370.923 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4371.012 kb on - strand, within MPMX20_04168at 4371.031 kb on + strand, within MPMX20_04168at 4371.039 kb on - strand, within MPMX20_04168at 4371.067 kb on + strand, within MPMX20_04168at 4371.068 kb on + strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.104 kb on - strand, within MPMX20_04168at 4371.259 kb on - strand, within MPMX20_04168at 4371.260 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.365 kb on + strand, within MPMX20_04168at 4371.367 kb on + strand, within MPMX20_04168at 4371.388 kb on + strand, within MPMX20_04168at 4371.392 kb on + strand, within MPMX20_04168at 4371.432 kb on - strand, within MPMX20_04168at 4371.435 kb on - strand, within MPMX20_04168at 4371.472 kb on - strandat 4371.491 kb on - strandat 4371.492 kb on + strandat 4371.728 kb on + strandat 4371.731 kb on - strandat 4371.814 kb on - strandat 4371.823 kb on + strandat 4371.827 kb on + strandat 4371.835 kb on - strandat 4371.881 kb on + strandat 4371.941 kb on + strandat 4371.951 kb on + strand, within MPMX20_04169at 4371.960 kb on - strand, within MPMX20_04169at 4371.971 kb on + strand, within MPMX20_04169at 4372.179 kb on + strand, within MPMX20_04169at 4372.199 kb on - strand, within MPMX20_04169at 4372.208 kb on + strand, within MPMX20_04169at 4372.213 kb on + strand, within MPMX20_04169at 4372.213 kb on + strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.221 kb on - strand, within MPMX20_04169at 4372.230 kb on + strand, within MPMX20_04169at 4372.231 kb on - strand, within MPMX20_04169at 4372.232 kb on + strand, within MPMX20_04169at 4372.240 kb on - strand, within MPMX20_04169at 4372.248 kb on - strand, within MPMX20_04169at 4372.292 kb on + strand, within MPMX20_04169at 4372.298 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.308 kb on - strand, within MPMX20_04169at 4372.349 kb on - strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.467 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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4,369,780 - +0.5
4,369,809 + +1.8
4,369,817 - -1.3
4,369,817 - -1.7
4,369,822 - +0.3
4,369,840 + +0.7
4,369,919 - MPMX20_04167 0.18 +2.2
4,369,989 + MPMX20_04167 0.26 -1.2
4,370,219 + MPMX20_04167 0.52 +4.6
4,370,338 + MPMX20_04167 0.66 -1.7
4,370,346 - MPMX20_04167 0.67 -1.3
4,370,346 - MPMX20_04167 0.67 +0.7
4,370,360 - MPMX20_04167 0.68 +0.9
4,370,392 - MPMX20_04167 0.72 -0.3
4,370,412 + MPMX20_04167 0.74 -0.6
4,370,412 + MPMX20_04167 0.74 -0.1
4,370,492 - MPMX20_04167 0.83 -0.2
4,370,586 + -2.9
4,370,655 + -0.4
4,370,655 + +2.2
4,370,663 - -0.6
4,370,667 + -0.6
4,370,673 - +0.9
4,370,675 - +2.1
4,370,681 + -0.5
4,370,744 + -0.1
4,370,763 - -1.9
4,370,818 + -0.4
4,370,829 + +0.5
4,370,829 + +1.6
4,370,837 - -0.8
4,370,843 - +2.2
4,370,847 - +1.2
4,370,849 - +2.2
4,370,857 + MPMX20_04168 0.11 +2.2
4,370,862 + MPMX20_04168 0.11 +0.1
4,370,894 + MPMX20_04168 0.16 -0.8
4,370,923 + MPMX20_04168 0.20 -0.8
4,370,969 + MPMX20_04168 0.26 -0.3
4,370,969 + MPMX20_04168 0.26 -0.0
4,370,977 - MPMX20_04168 0.27 -0.4
4,370,977 - MPMX20_04168 0.27 +0.6
4,371,012 - MPMX20_04168 0.32 +0.8
4,371,031 + MPMX20_04168 0.34 +2.2
4,371,039 - MPMX20_04168 0.35 -0.5
4,371,067 + MPMX20_04168 0.39 -1.0
4,371,068 + MPMX20_04168 0.39 -1.7
4,371,094 - MPMX20_04168 0.43 -0.0
4,371,094 - MPMX20_04168 0.43 +0.6
4,371,094 - MPMX20_04168 0.43 +0.1
4,371,104 - MPMX20_04168 0.44 -0.5
4,371,259 - MPMX20_04168 0.65 -0.5
4,371,260 + MPMX20_04168 0.65 -0.6
4,371,265 + MPMX20_04168 0.66 +0.9
4,371,265 + MPMX20_04168 0.66 -0.1
4,371,265 + MPMX20_04168 0.66 +0.3
4,371,265 + MPMX20_04168 0.66 +2.2
4,371,273 - MPMX20_04168 0.67 +0.7
4,371,273 - MPMX20_04168 0.67 +1.2
4,371,273 - MPMX20_04168 0.67 +0.1
4,371,273 - MPMX20_04168 0.67 +4.3
4,371,273 - MPMX20_04168 0.67 -0.3
4,371,273 - MPMX20_04168 0.67 +1.2
4,371,273 - MPMX20_04168 0.67 +0.0
4,371,365 + MPMX20_04168 0.79 +0.2
4,371,367 + MPMX20_04168 0.79 -0.8
4,371,388 + MPMX20_04168 0.82 +1.6
4,371,392 + MPMX20_04168 0.83 +1.7
4,371,432 - MPMX20_04168 0.88 -0.7
4,371,435 - MPMX20_04168 0.89 +0.9
4,371,472 - +0.0
4,371,491 - -0.9
4,371,492 + +1.3
4,371,728 + +0.0
4,371,731 - -0.7
4,371,814 - +0.2
4,371,823 + -1.4
4,371,827 + +0.6
4,371,835 - +0.2
4,371,881 + +1.6
4,371,941 + -0.9
4,371,951 + MPMX20_04169 0.11 -0.0
4,371,960 - MPMX20_04169 0.11 +1.2
4,371,971 + MPMX20_04169 0.13 +0.7
4,372,179 + MPMX20_04169 0.34 +0.3
4,372,199 - MPMX20_04169 0.36 -0.9
4,372,208 + MPMX20_04169 0.37 -0.8
4,372,213 + MPMX20_04169 0.38 +1.2
4,372,213 + MPMX20_04169 0.38 +0.8
4,372,221 - MPMX20_04169 0.39 +1.6
4,372,221 - MPMX20_04169 0.39 +5.0
4,372,221 - MPMX20_04169 0.39 -0.2
4,372,230 + MPMX20_04169 0.39 +1.6
4,372,231 - MPMX20_04169 0.40 +1.5
4,372,232 + MPMX20_04169 0.40 +1.9
4,372,240 - MPMX20_04169 0.40 +1.2
4,372,248 - MPMX20_04169 0.41 +0.2
4,372,292 + MPMX20_04169 0.46 -1.8
4,372,298 - MPMX20_04169 0.46 +0.8
4,372,308 - MPMX20_04169 0.48 +0.4
4,372,308 - MPMX20_04169 0.48 -1.5
4,372,308 - MPMX20_04169 0.48 +1.1
4,372,349 - MPMX20_04169 0.52 +0.8
4,372,456 + MPMX20_04169 0.63 -0.1
4,372,456 + MPMX20_04169 0.63 +0.3
4,372,467 + MPMX20_04169 0.64 +0.9
4,372,472 + MPMX20_04169 0.64 +1.7
4,372,472 + MPMX20_04169 0.64 -0.4

Or see this region's nucleotide sequence