Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04167 and MPMX20_04168 are separated by 137 nucleotides MPMX20_04168 and MPMX20_04169 are separated by 330 nucleotides
MPMX20_04167: MPMX20_04167 - Ribosomal protein L11 methyltransferase, at 4,369,759 to 4,370,640
_04167
MPMX20_04168: MPMX20_04168 - Carbonic anhydrase, at 4,370,778 to 4,371,518
_04168
MPMX20_04169: MPMX20_04169 - tRNA-dihydrouridine synthase B, at 4,371,849 to 4,372,814
_04169
Position (kb)
4370
4371
4372 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4369.780 kb on - strand at 4369.809 kb on + strand at 4369.817 kb on - strand at 4369.817 kb on - strand at 4369.822 kb on - strand at 4369.840 kb on + strand at 4369.919 kb on - strand, within MPMX20_04167 at 4369.989 kb on + strand, within MPMX20_04167 at 4370.219 kb on + strand, within MPMX20_04167 at 4370.338 kb on + strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.360 kb on - strand, within MPMX20_04167 at 4370.392 kb on - strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.492 kb on - strand, within MPMX20_04167 at 4370.586 kb on + strand at 4370.655 kb on + strand at 4370.655 kb on + strand at 4370.663 kb on - strand at 4370.667 kb on + strand at 4370.673 kb on - strand at 4370.675 kb on - strand at 4370.681 kb on + strand at 4370.744 kb on + strand at 4370.763 kb on - strand at 4370.818 kb on + strand at 4370.829 kb on + strand at 4370.829 kb on + strand at 4370.837 kb on - strand at 4370.843 kb on - strand at 4370.847 kb on - strand at 4370.849 kb on - strand at 4370.857 kb on + strand, within MPMX20_04168 at 4370.862 kb on + strand, within MPMX20_04168 at 4370.894 kb on + strand, within MPMX20_04168 at 4370.923 kb on + strand, within MPMX20_04168 at 4370.969 kb on + strand, within MPMX20_04168 at 4370.969 kb on + strand, within MPMX20_04168 at 4370.977 kb on - strand, within MPMX20_04168 at 4370.977 kb on - strand, within MPMX20_04168 at 4371.012 kb on - strand, within MPMX20_04168 at 4371.031 kb on + strand, within MPMX20_04168 at 4371.039 kb on - strand, within MPMX20_04168 at 4371.067 kb on + strand, within MPMX20_04168 at 4371.068 kb on + strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.104 kb on - strand, within MPMX20_04168 at 4371.259 kb on - strand, within MPMX20_04168 at 4371.260 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.365 kb on + strand, within MPMX20_04168 at 4371.367 kb on + strand, within MPMX20_04168 at 4371.388 kb on + strand, within MPMX20_04168 at 4371.392 kb on + strand, within MPMX20_04168 at 4371.432 kb on - strand, within MPMX20_04168 at 4371.435 kb on - strand, within MPMX20_04168 at 4371.472 kb on - strand at 4371.491 kb on - strand at 4371.492 kb on + strand at 4371.728 kb on + strand at 4371.731 kb on - strand at 4371.814 kb on - strand at 4371.823 kb on + strand at 4371.827 kb on + strand at 4371.835 kb on - strand at 4371.881 kb on + strand at 4371.941 kb on + strand at 4371.951 kb on + strand, within MPMX20_04169 at 4371.960 kb on - strand, within MPMX20_04169 at 4371.971 kb on + strand, within MPMX20_04169 at 4372.179 kb on + strand, within MPMX20_04169 at 4372.199 kb on - strand, within MPMX20_04169 at 4372.208 kb on + strand, within MPMX20_04169 at 4372.213 kb on + strand, within MPMX20_04169 at 4372.213 kb on + strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.221 kb on - strand, within MPMX20_04169 at 4372.230 kb on + strand, within MPMX20_04169 at 4372.231 kb on - strand, within MPMX20_04169 at 4372.232 kb on + strand, within MPMX20_04169 at 4372.240 kb on - strand, within MPMX20_04169 at 4372.248 kb on - strand, within MPMX20_04169 at 4372.292 kb on + strand, within MPMX20_04169 at 4372.298 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.308 kb on - strand, within MPMX20_04169 at 4372.349 kb on - strand, within MPMX20_04169 at 4372.456 kb on + strand, within MPMX20_04169 at 4372.456 kb on + strand, within MPMX20_04169 at 4372.467 kb on + strand, within MPMX20_04169 at 4372.472 kb on + strand, within MPMX20_04169 at 4372.472 kb on + strand, within MPMX20_04169
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030 remove 4,369,780 - +0.5 4,369,809 + +1.8 4,369,817 - -1.3 4,369,817 - -1.7 4,369,822 - +0.3 4,369,840 + +0.7 4,369,919 - MPMX20_04167 0.18 +2.2 4,369,989 + MPMX20_04167 0.26 -1.2 4,370,219 + MPMX20_04167 0.52 +4.6 4,370,338 + MPMX20_04167 0.66 -1.7 4,370,346 - MPMX20_04167 0.67 -1.3 4,370,346 - MPMX20_04167 0.67 +0.7 4,370,360 - MPMX20_04167 0.68 +0.9 4,370,392 - MPMX20_04167 0.72 -0.3 4,370,412 + MPMX20_04167 0.74 -0.6 4,370,412 + MPMX20_04167 0.74 -0.1 4,370,492 - MPMX20_04167 0.83 -0.2 4,370,586 + -2.9 4,370,655 + -0.4 4,370,655 + +2.2 4,370,663 - -0.6 4,370,667 + -0.6 4,370,673 - +0.9 4,370,675 - +2.1 4,370,681 + -0.5 4,370,744 + -0.1 4,370,763 - -1.9 4,370,818 + -0.4 4,370,829 + +0.5 4,370,829 + +1.6 4,370,837 - -0.8 4,370,843 - +2.2 4,370,847 - +1.2 4,370,849 - +2.2 4,370,857 + MPMX20_04168 0.11 +2.2 4,370,862 + MPMX20_04168 0.11 +0.1 4,370,894 + MPMX20_04168 0.16 -0.8 4,370,923 + MPMX20_04168 0.20 -0.8 4,370,969 + MPMX20_04168 0.26 -0.3 4,370,969 + MPMX20_04168 0.26 -0.0 4,370,977 - MPMX20_04168 0.27 -0.4 4,370,977 - MPMX20_04168 0.27 +0.6 4,371,012 - MPMX20_04168 0.32 +0.8 4,371,031 + MPMX20_04168 0.34 +2.2 4,371,039 - MPMX20_04168 0.35 -0.5 4,371,067 + MPMX20_04168 0.39 -1.0 4,371,068 + MPMX20_04168 0.39 -1.7 4,371,094 - MPMX20_04168 0.43 -0.0 4,371,094 - MPMX20_04168 0.43 +0.6 4,371,094 - MPMX20_04168 0.43 +0.1 4,371,104 - MPMX20_04168 0.44 -0.5 4,371,259 - MPMX20_04168 0.65 -0.5 4,371,260 + MPMX20_04168 0.65 -0.6 4,371,265 + MPMX20_04168 0.66 +0.9 4,371,265 + MPMX20_04168 0.66 -0.1 4,371,265 + MPMX20_04168 0.66 +0.3 4,371,265 + MPMX20_04168 0.66 +2.2 4,371,273 - MPMX20_04168 0.67 +0.7 4,371,273 - MPMX20_04168 0.67 +1.2 4,371,273 - MPMX20_04168 0.67 +0.1 4,371,273 - MPMX20_04168 0.67 +4.3 4,371,273 - MPMX20_04168 0.67 -0.3 4,371,273 - MPMX20_04168 0.67 +1.2 4,371,273 - MPMX20_04168 0.67 +0.0 4,371,365 + MPMX20_04168 0.79 +0.2 4,371,367 + MPMX20_04168 0.79 -0.8 4,371,388 + MPMX20_04168 0.82 +1.6 4,371,392 + MPMX20_04168 0.83 +1.7 4,371,432 - MPMX20_04168 0.88 -0.7 4,371,435 - MPMX20_04168 0.89 +0.9 4,371,472 - +0.0 4,371,491 - -0.9 4,371,492 + +1.3 4,371,728 + +0.0 4,371,731 - -0.7 4,371,814 - +0.2 4,371,823 + -1.4 4,371,827 + +0.6 4,371,835 - +0.2 4,371,881 + +1.6 4,371,941 + -0.9 4,371,951 + MPMX20_04169 0.11 -0.0 4,371,960 - MPMX20_04169 0.11 +1.2 4,371,971 + MPMX20_04169 0.13 +0.7 4,372,179 + MPMX20_04169 0.34 +0.3 4,372,199 - MPMX20_04169 0.36 -0.9 4,372,208 + MPMX20_04169 0.37 -0.8 4,372,213 + MPMX20_04169 0.38 +1.2 4,372,213 + MPMX20_04169 0.38 +0.8 4,372,221 - MPMX20_04169 0.39 +1.6 4,372,221 - MPMX20_04169 0.39 +5.0 4,372,221 - MPMX20_04169 0.39 -0.2 4,372,230 + MPMX20_04169 0.39 +1.6 4,372,231 - MPMX20_04169 0.40 +1.5 4,372,232 + MPMX20_04169 0.40 +1.9 4,372,240 - MPMX20_04169 0.40 +1.2 4,372,248 - MPMX20_04169 0.41 +0.2 4,372,292 + MPMX20_04169 0.46 -1.8 4,372,298 - MPMX20_04169 0.46 +0.8 4,372,308 - MPMX20_04169 0.48 +0.4 4,372,308 - MPMX20_04169 0.48 -1.5 4,372,308 - MPMX20_04169 0.48 +1.1 4,372,349 - MPMX20_04169 0.52 +0.8 4,372,456 + MPMX20_04169 0.63 -0.1 4,372,456 + MPMX20_04169 0.63 +0.3 4,372,467 + MPMX20_04169 0.64 +0.9 4,372,472 + MPMX20_04169 0.64 +1.7 4,372,472 + MPMX20_04169 0.64 -0.4
Or see this region's nucleotide sequence