Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04006

Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04004 and MPMX20_04005 are separated by 2 nucleotidesMPMX20_04005 and MPMX20_04006 are separated by 143 nucleotidesMPMX20_04006 and MPMX20_04007 are separated by 29 nucleotidesMPMX20_04007 and MPMX20_04008 are separated by 1 nucleotidesMPMX20_04008 and MPMX20_04009 overlap by 4 nucleotides MPMX20_04004: MPMX20_04004 - Inner membrane protein YqjA, at 4,203,511 to 4,204,173 _04004 MPMX20_04005: MPMX20_04005 - Modulator protein MzrA, at 4,204,176 to 4,204,559 _04005 MPMX20_04006: MPMX20_04006 - Protein YqjC, at 4,204,703 to 4,205,071 _04006 MPMX20_04007: MPMX20_04007 - putative protein YqjD, at 4,205,101 to 4,205,406 _04007 MPMX20_04008: MPMX20_04008 - Inner membrane protein YqjE, at 4,205,408 to 4,205,806 _04008 MPMX20_04009: MPMX20_04009 - hypothetical protein, at 4,205,803 to 4,206,099 _04009 Position (kb) 4204 4205 4206Strain fitness (log2 ratio) -1 0 1 2 3at 4203.756 kb on - strand, within MPMX20_04004at 4203.767 kb on + strand, within MPMX20_04004at 4203.767 kb on + strand, within MPMX20_04004at 4203.775 kb on - strand, within MPMX20_04004at 4203.794 kb on + strand, within MPMX20_04004at 4203.813 kb on - strand, within MPMX20_04004at 4203.818 kb on - strand, within MPMX20_04004at 4203.996 kb on + strand, within MPMX20_04004at 4203.999 kb on - strand, within MPMX20_04004at 4204.025 kb on + strand, within MPMX20_04004at 4204.031 kb on - strand, within MPMX20_04004at 4204.033 kb on - strand, within MPMX20_04004at 4204.069 kb on - strand, within MPMX20_04004at 4204.072 kb on + strand, within MPMX20_04004at 4204.090 kb on - strand, within MPMX20_04004at 4204.090 kb on - strand, within MPMX20_04004at 4204.176 kb on - strandat 4204.253 kb on + strand, within MPMX20_04005at 4204.306 kb on + strand, within MPMX20_04005at 4204.306 kb on + strand, within MPMX20_04005at 4204.310 kb on + strand, within MPMX20_04005at 4204.312 kb on + strand, within MPMX20_04005at 4204.378 kb on + strand, within MPMX20_04005at 4204.379 kb on + strand, within MPMX20_04005at 4204.384 kb on - strand, within MPMX20_04005at 4204.456 kb on + strand, within MPMX20_04005at 4204.464 kb on - strand, within MPMX20_04005at 4204.464 kb on - strand, within MPMX20_04005at 4204.474 kb on + strand, within MPMX20_04005at 4204.475 kb on - strand, within MPMX20_04005at 4204.480 kb on - strand, within MPMX20_04005at 4204.482 kb on - strand, within MPMX20_04005at 4204.508 kb on + strand, within MPMX20_04005at 4204.633 kb on - strandat 4204.635 kb on + strandat 4204.657 kb on + strandat 4204.665 kb on - strandat 4204.685 kb on - strandat 4204.718 kb on + strandat 4204.839 kb on + strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.847 kb on - strand, within MPMX20_04006at 4204.884 kb on + strand, within MPMX20_04006at 4204.897 kb on + strand, within MPMX20_04006at 4205.020 kb on + strand, within MPMX20_04006at 4205.110 kb on + strandat 4205.167 kb on - strand, within MPMX20_04007at 4205.167 kb on - strand, within MPMX20_04007at 4205.228 kb on - strand, within MPMX20_04007at 4205.228 kb on - strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.252 kb on + strand, within MPMX20_04007at 4205.287 kb on + strand, within MPMX20_04007at 4205.355 kb on + strand, within MPMX20_04007at 4205.355 kb on - strand, within MPMX20_04007at 4205.361 kb on - strand, within MPMX20_04007at 4205.380 kb on - strandat 4205.380 kb on - strandat 4205.482 kb on + strand, within MPMX20_04008at 4205.531 kb on - strand, within MPMX20_04008at 4205.565 kb on + strand, within MPMX20_04008at 4205.576 kb on + strand, within MPMX20_04008at 4205.615 kb on + strand, within MPMX20_04008at 4205.762 kb on + strand, within MPMX20_04008at 4205.770 kb on - strandat 4205.793 kb on - strandat 4205.793 kb on - strandat 4205.816 kb on - strandat 4205.905 kb on - strand, within MPMX20_04009at 4205.927 kb on + strand, within MPMX20_04009at 4205.939 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.954 kb on + strand, within MPMX20_04009at 4205.973 kb on - strand, within MPMX20_04009at 4205.975 kb on + strand, within MPMX20_04009

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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4,203,756 - MPMX20_04004 0.37 -0.2
4,203,767 + MPMX20_04004 0.39 -1.4
4,203,767 + MPMX20_04004 0.39 -0.3
4,203,775 - MPMX20_04004 0.40 -1.6
4,203,794 + MPMX20_04004 0.43 -0.4
4,203,813 - MPMX20_04004 0.46 +1.3
4,203,818 - MPMX20_04004 0.46 -1.7
4,203,996 + MPMX20_04004 0.73 -1.6
4,203,999 - MPMX20_04004 0.74 +0.4
4,204,025 + MPMX20_04004 0.78 +0.4
4,204,031 - MPMX20_04004 0.78 -0.1
4,204,033 - MPMX20_04004 0.79 -0.2
4,204,069 - MPMX20_04004 0.84 +2.3
4,204,072 + MPMX20_04004 0.85 -0.4
4,204,090 - MPMX20_04004 0.87 -0.0
4,204,090 - MPMX20_04004 0.87 +0.7
4,204,176 - +0.8
4,204,253 + MPMX20_04005 0.20 +2.4
4,204,306 + MPMX20_04005 0.34 -1.4
4,204,306 + MPMX20_04005 0.34 +2.5
4,204,310 + MPMX20_04005 0.35 -0.1
4,204,312 + MPMX20_04005 0.35 -0.7
4,204,378 + MPMX20_04005 0.53 -0.5
4,204,379 + MPMX20_04005 0.53 -0.4
4,204,384 - MPMX20_04005 0.54 +0.3
4,204,456 + MPMX20_04005 0.73 +0.4
4,204,464 - MPMX20_04005 0.75 -0.2
4,204,464 - MPMX20_04005 0.75 +0.5
4,204,474 + MPMX20_04005 0.78 +1.3
4,204,475 - MPMX20_04005 0.78 +1.9
4,204,480 - MPMX20_04005 0.79 -0.9
4,204,482 - MPMX20_04005 0.80 +2.9
4,204,508 + MPMX20_04005 0.86 -1.4
4,204,633 - +1.3
4,204,635 + +2.9
4,204,657 + -0.9
4,204,665 - +0.3
4,204,685 - -0.7
4,204,718 + +0.1
4,204,839 + MPMX20_04006 0.37 +0.3
4,204,847 - MPMX20_04006 0.39 -0.4
4,204,847 - MPMX20_04006 0.39 -1.6
4,204,847 - MPMX20_04006 0.39 +0.4
4,204,847 - MPMX20_04006 0.39 -0.0
4,204,884 + MPMX20_04006 0.49 -0.5
4,204,897 + MPMX20_04006 0.53 -0.3
4,205,020 + MPMX20_04006 0.86 +0.9
4,205,110 + -1.3
4,205,167 - MPMX20_04007 0.22 +1.3
4,205,167 - MPMX20_04007 0.22 -0.4
4,205,228 - MPMX20_04007 0.42 -1.5
4,205,228 - MPMX20_04007 0.42 +0.7
4,205,252 + MPMX20_04007 0.49 -0.4
4,205,252 + MPMX20_04007 0.49 -0.9
4,205,252 + MPMX20_04007 0.49 -0.9
4,205,287 + MPMX20_04007 0.61 -0.1
4,205,355 + MPMX20_04007 0.83 +1.3
4,205,355 - MPMX20_04007 0.83 -0.8
4,205,361 - MPMX20_04007 0.85 -0.9
4,205,380 - -0.5
4,205,380 - -1.5
4,205,482 + MPMX20_04008 0.19 +0.3
4,205,531 - MPMX20_04008 0.31 -0.6
4,205,565 + MPMX20_04008 0.39 -1.0
4,205,576 + MPMX20_04008 0.42 +1.7
4,205,615 + MPMX20_04008 0.52 -0.3
4,205,762 + MPMX20_04008 0.89 +1.3
4,205,770 - -0.2
4,205,793 - -0.4
4,205,793 - -1.7
4,205,816 - +0.3
4,205,905 - MPMX20_04009 0.34 +1.0
4,205,927 + MPMX20_04009 0.42 +2.3
4,205,939 + MPMX20_04009 0.46 -1.0
4,205,954 + MPMX20_04009 0.51 +0.1
4,205,954 + MPMX20_04009 0.51 -1.3
4,205,973 - MPMX20_04009 0.57 -0.0
4,205,975 + MPMX20_04009 0.58 +0.1

Or see this region's nucleotide sequence