Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03114

Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03112 and MPMX20_03113 are separated by 194 nucleotidesMPMX20_03113 and MPMX20_03114 overlap by 4 nucleotidesMPMX20_03114 and MPMX20_03115 are separated by 129 nucleotides MPMX20_03112: MPMX20_03112 - tRNA-dihydrouridine(16) synthase, at 3,268,334 to 3,269,266 _03112 MPMX20_03113: MPMX20_03113 - hypothetical protein, at 3,269,461 to 3,269,859 _03113 MPMX20_03114: MPMX20_03114 - Inner membrane protein YohK, at 3,269,856 to 3,270,551 _03114 MPMX20_03115: MPMX20_03115 - Cytidine deaminase, at 3,270,681 to 3,271,565 _03115 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3268.857 kb on - strand, within MPMX20_03112at 3268.857 kb on - strand, within MPMX20_03112at 3268.857 kb on - strand, within MPMX20_03112at 3268.857 kb on - strand, within MPMX20_03112at 3268.857 kb on - strand, within MPMX20_03112at 3268.857 kb on - strand, within MPMX20_03112at 3268.881 kb on + strand, within MPMX20_03112at 3268.905 kb on + strand, within MPMX20_03112at 3268.913 kb on - strand, within MPMX20_03112at 3268.913 kb on - strand, within MPMX20_03112at 3268.990 kb on - strand, within MPMX20_03112at 3269.001 kb on + strand, within MPMX20_03112at 3269.008 kb on + strand, within MPMX20_03112at 3269.081 kb on + strand, within MPMX20_03112at 3269.096 kb on + strand, within MPMX20_03112at 3269.096 kb on + strand, within MPMX20_03112at 3269.110 kb on + strand, within MPMX20_03112at 3269.221 kb on + strandat 3269.246 kb on - strandat 3269.250 kb on - strandat 3269.323 kb on + strandat 3269.324 kb on - strandat 3269.349 kb on + strandat 3269.351 kb on - strandat 3269.352 kb on - strandat 3269.371 kb on + strandat 3269.379 kb on - strandat 3269.494 kb on - strandat 3269.501 kb on + strand, within MPMX20_03113at 3269.511 kb on + strand, within MPMX20_03113at 3269.511 kb on + strand, within MPMX20_03113at 3269.581 kb on + strand, within MPMX20_03113at 3269.637 kb on + strand, within MPMX20_03113at 3269.637 kb on + strand, within MPMX20_03113at 3269.645 kb on - strand, within MPMX20_03113at 3269.645 kb on - strand, within MPMX20_03113at 3269.645 kb on - strand, within MPMX20_03113at 3269.645 kb on - strand, within MPMX20_03113at 3269.645 kb on - strand, within MPMX20_03113at 3269.650 kb on - strand, within MPMX20_03113at 3269.651 kb on + strand, within MPMX20_03113at 3269.659 kb on - strand, within MPMX20_03113at 3269.696 kb on + strand, within MPMX20_03113at 3269.704 kb on - strand, within MPMX20_03113at 3269.704 kb on - strand, within MPMX20_03113at 3269.766 kb on - strand, within MPMX20_03113at 3269.900 kb on + strandat 3269.908 kb on - strandat 3269.908 kb on - strandat 3269.978 kb on - strand, within MPMX20_03114at 3270.077 kb on - strand, within MPMX20_03114at 3270.188 kb on + strand, within MPMX20_03114at 3270.188 kb on + strand, within MPMX20_03114at 3270.191 kb on - strand, within MPMX20_03114at 3270.196 kb on - strand, within MPMX20_03114at 3270.235 kb on - strand, within MPMX20_03114at 3270.283 kb on - strand, within MPMX20_03114at 3270.379 kb on - strand, within MPMX20_03114at 3270.414 kb on + strand, within MPMX20_03114at 3270.414 kb on + strand, within MPMX20_03114at 3270.422 kb on - strand, within MPMX20_03114at 3270.422 kb on - strand, within MPMX20_03114at 3270.438 kb on + strand, within MPMX20_03114at 3270.648 kb on - strandat 3270.655 kb on + strandat 3270.740 kb on + strandat 3270.784 kb on - strand, within MPMX20_03115at 3270.784 kb on - strand, within MPMX20_03115at 3270.789 kb on - strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.816 kb on + strand, within MPMX20_03115at 3270.856 kb on - strand, within MPMX20_03115at 3270.933 kb on - strand, within MPMX20_03115at 3270.967 kb on + strand, within MPMX20_03115at 3270.998 kb on - strand, within MPMX20_03115at 3271.013 kb on - strand, within MPMX20_03115at 3271.075 kb on + strand, within MPMX20_03115at 3271.100 kb on - strand, within MPMX20_03115at 3271.148 kb on - strand, within MPMX20_03115at 3271.243 kb on + strand, within MPMX20_03115at 3271.281 kb on - strand, within MPMX20_03115at 3271.283 kb on + strand, within MPMX20_03115at 3271.301 kb on - strand, within MPMX20_03115at 3271.330 kb on + strand, within MPMX20_03115at 3271.370 kb on - strand, within MPMX20_03115at 3271.398 kb on + strand, within MPMX20_03115at 3271.406 kb on - strand, within MPMX20_03115at 3271.431 kb on + strand, within MPMX20_03115at 3271.431 kb on - strand, within MPMX20_03115at 3271.439 kb on - strand, within MPMX20_03115

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
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3,268,857 - MPMX20_03112 0.56 +1.1
3,268,857 - MPMX20_03112 0.56 -0.6
3,268,857 - MPMX20_03112 0.56 -0.1
3,268,857 - MPMX20_03112 0.56 -0.7
3,268,857 - MPMX20_03112 0.56 +0.1
3,268,857 - MPMX20_03112 0.56 +0.3
3,268,881 + MPMX20_03112 0.59 +0.4
3,268,905 + MPMX20_03112 0.61 -0.5
3,268,913 - MPMX20_03112 0.62 -0.3
3,268,913 - MPMX20_03112 0.62 -0.1
3,268,990 - MPMX20_03112 0.70 +0.7
3,269,001 + MPMX20_03112 0.71 -1.8
3,269,008 + MPMX20_03112 0.72 -1.5
3,269,081 + MPMX20_03112 0.80 -0.0
3,269,096 + MPMX20_03112 0.82 +0.4
3,269,096 + MPMX20_03112 0.82 +0.1
3,269,110 + MPMX20_03112 0.83 +0.3
3,269,221 + -0.5
3,269,246 - +0.2
3,269,250 - +1.5
3,269,323 + -1.1
3,269,324 - -2.1
3,269,349 + +1.1
3,269,351 - +0.6
3,269,352 - +2.5
3,269,371 + +0.4
3,269,379 - +1.9
3,269,494 - +0.1
3,269,501 + MPMX20_03113 0.10 +0.0
3,269,511 + MPMX20_03113 0.13 -1.5
3,269,511 + MPMX20_03113 0.13 -1.1
3,269,581 + MPMX20_03113 0.30 -0.2
3,269,637 + MPMX20_03113 0.44 -1.2
3,269,637 + MPMX20_03113 0.44 +0.5
3,269,645 - MPMX20_03113 0.46 +0.8
3,269,645 - MPMX20_03113 0.46 -1.3
3,269,645 - MPMX20_03113 0.46 -2.1
3,269,645 - MPMX20_03113 0.46 +0.4
3,269,645 - MPMX20_03113 0.46 -0.5
3,269,650 - MPMX20_03113 0.47 +0.9
3,269,651 + MPMX20_03113 0.48 +0.5
3,269,659 - MPMX20_03113 0.50 +0.4
3,269,696 + MPMX20_03113 0.59 +0.1
3,269,704 - MPMX20_03113 0.61 -0.3
3,269,704 - MPMX20_03113 0.61 -0.1
3,269,766 - MPMX20_03113 0.76 +1.1
3,269,900 + -0.0
3,269,908 - +0.7
3,269,908 - +0.1
3,269,978 - MPMX20_03114 0.18 +1.5
3,270,077 - MPMX20_03114 0.32 +0.8
3,270,188 + MPMX20_03114 0.48 -0.6
3,270,188 + MPMX20_03114 0.48 -1.4
3,270,191 - MPMX20_03114 0.48 +0.9
3,270,196 - MPMX20_03114 0.49 +1.5
3,270,235 - MPMX20_03114 0.54 -1.6
3,270,283 - MPMX20_03114 0.61 -1.6
3,270,379 - MPMX20_03114 0.75 +4.6
3,270,414 + MPMX20_03114 0.80 -0.8
3,270,414 + MPMX20_03114 0.80 -0.5
3,270,422 - MPMX20_03114 0.81 +1.4
3,270,422 - MPMX20_03114 0.81 +0.6
3,270,438 + MPMX20_03114 0.84 +0.3
3,270,648 - +1.6
3,270,655 + +1.0
3,270,740 + +0.4
3,270,784 - MPMX20_03115 0.12 -0.7
3,270,784 - MPMX20_03115 0.12 +1.0
3,270,789 - MPMX20_03115 0.12 -0.9
3,270,816 + MPMX20_03115 0.15 -2.0
3,270,816 + MPMX20_03115 0.15 +0.2
3,270,816 + MPMX20_03115 0.15 -1.5
3,270,856 - MPMX20_03115 0.20 -0.3
3,270,933 - MPMX20_03115 0.28 -0.8
3,270,967 + MPMX20_03115 0.32 -0.0
3,270,998 - MPMX20_03115 0.36 -0.6
3,271,013 - MPMX20_03115 0.38 +1.2
3,271,075 + MPMX20_03115 0.45 +0.7
3,271,100 - MPMX20_03115 0.47 -1.1
3,271,148 - MPMX20_03115 0.53 -0.1
3,271,243 + MPMX20_03115 0.64 +2.9
3,271,281 - MPMX20_03115 0.68 +1.7
3,271,283 + MPMX20_03115 0.68 -0.0
3,271,301 - MPMX20_03115 0.70 -1.0
3,271,330 + MPMX20_03115 0.73 +1.7
3,271,370 - MPMX20_03115 0.78 -0.4
3,271,398 + MPMX20_03115 0.81 +0.7
3,271,406 - MPMX20_03115 0.82 -1.9
3,271,431 + MPMX20_03115 0.85 +0.4
3,271,431 - MPMX20_03115 0.85 +1.0
3,271,439 - MPMX20_03115 0.86 +0.8

Or see this region's nucleotide sequence