Experiment: 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02468 and MPMX20_02469 are separated by 185 nucleotides MPMX20_02469 and MPMX20_02470 are separated by 12 nucleotides MPMX20_02470 and MPMX20_02471 overlap by 1 nucleotides MPMX20_02471 and MPMX20_02472 are separated by 54 nucleotides
MPMX20_02468: MPMX20_02468 - Glucosylglycerate phosphorylase, at 2,609,323 to 2,611,020
_02468
MPMX20_02469: MPMX20_02469 - Phage shock protein D, at 2,611,206 to 2,611,430
_02469
MPMX20_02470: MPMX20_02470 - Phage shock protein C, at 2,611,443 to 2,611,802
_02470
MPMX20_02471: MPMX20_02471 - Phage shock protein B, at 2,611,802 to 2,612,026
_02471
MPMX20_02472: MPMX20_02472 - Phage shock protein A, at 2,612,081 to 2,612,749
_02472
Position (kb)
2611
2612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2610.444 kb on + strand, within MPMX20_02468 at 2610.444 kb on + strand, within MPMX20_02468 at 2610.447 kb on + strand, within MPMX20_02468 at 2610.462 kb on + strand, within MPMX20_02468 at 2610.463 kb on - strand, within MPMX20_02468 at 2610.467 kb on + strand, within MPMX20_02468 at 2610.467 kb on + strand, within MPMX20_02468 at 2610.468 kb on + strand, within MPMX20_02468 at 2610.468 kb on + strand, within MPMX20_02468 at 2610.476 kb on + strand, within MPMX20_02468 at 2610.477 kb on + strand, within MPMX20_02468 at 2610.477 kb on + strand, within MPMX20_02468 at 2610.477 kb on + strand, within MPMX20_02468 at 2610.477 kb on + strand, within MPMX20_02468 at 2610.484 kb on - strand, within MPMX20_02468 at 2610.486 kb on + strand, within MPMX20_02468 at 2610.486 kb on + strand, within MPMX20_02468 at 2610.487 kb on + strand, within MPMX20_02468 at 2610.487 kb on + strand, within MPMX20_02468 at 2610.494 kb on + strand, within MPMX20_02468 at 2610.494 kb on + strand, within MPMX20_02468 at 2610.501 kb on + strand, within MPMX20_02468 at 2610.501 kb on + strand, within MPMX20_02468 at 2610.502 kb on - strand, within MPMX20_02468 at 2610.505 kb on + strand, within MPMX20_02468 at 2610.512 kb on + strand, within MPMX20_02468 at 2610.519 kb on + strand, within MPMX20_02468 at 2610.524 kb on + strand, within MPMX20_02468 at 2610.524 kb on + strand, within MPMX20_02468 at 2610.534 kb on + strand, within MPMX20_02468 at 2610.544 kb on + strand, within MPMX20_02468 at 2610.551 kb on + strand, within MPMX20_02468 at 2610.551 kb on + strand, within MPMX20_02468 at 2610.559 kb on + strand, within MPMX20_02468 at 2610.570 kb on + strand, within MPMX20_02468 at 2610.570 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.589 kb on + strand, within MPMX20_02468 at 2610.595 kb on + strand, within MPMX20_02468 at 2610.600 kb on + strand, within MPMX20_02468 at 2610.602 kb on + strand, within MPMX20_02468 at 2610.607 kb on + strand, within MPMX20_02468 at 2610.664 kb on + strand, within MPMX20_02468 at 2610.666 kb on + strand, within MPMX20_02468 at 2610.672 kb on - strand, within MPMX20_02468 at 2610.687 kb on + strand, within MPMX20_02468 at 2610.723 kb on + strand, within MPMX20_02468 at 2610.770 kb on + strand, within MPMX20_02468 at 2611.043 kb on + strand at 2611.051 kb on - strand at 2611.051 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.104 kb on - strand at 2611.111 kb on + strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.114 kb on - strand at 2611.119 kb on - strand at 2611.119 kb on - strand at 2611.124 kb on - strand at 2611.124 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.126 kb on - strand at 2611.150 kb on - strand at 2611.163 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.169 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.174 kb on - strand at 2611.187 kb on + strand at 2611.188 kb on + strand at 2611.188 kb on + strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.195 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.196 kb on - strand at 2611.219 kb on - strand at 2611.224 kb on - strand at 2611.259 kb on - strand, within MPMX20_02469 at 2611.266 kb on - strand, within MPMX20_02469 at 2611.266 kb on - strand, within MPMX20_02469 at 2611.273 kb on + strand, within MPMX20_02469 at 2611.285 kb on - strand, within MPMX20_02469 at 2611.285 kb on - strand, within MPMX20_02469 at 2611.309 kb on + strand, within MPMX20_02469 at 2611.309 kb on - strand, within MPMX20_02469 at 2611.352 kb on - strand, within MPMX20_02469 at 2611.357 kb on + strand, within MPMX20_02469 at 2611.359 kb on - strand, within MPMX20_02469 at 2611.369 kb on - strand, within MPMX20_02469 at 2611.373 kb on - strand, within MPMX20_02469 at 2611.397 kb on - strand, within MPMX20_02469 at 2611.398 kb on - strand, within MPMX20_02469 at 2611.398 kb on - strand, within MPMX20_02469 at 2611.419 kb on + strand at 2611.440 kb on + strand at 2611.469 kb on + strand at 2611.469 kb on + strand at 2611.477 kb on - strand at 2611.486 kb on - strand, within MPMX20_02470 at 2611.515 kb on + strand, within MPMX20_02470 at 2611.520 kb on + strand, within MPMX20_02470 at 2611.523 kb on - strand, within MPMX20_02470 at 2611.564 kb on - strand, within MPMX20_02470 at 2611.630 kb on + strand, within MPMX20_02470 at 2611.673 kb on + strand, within MPMX20_02470 at 2611.679 kb on + strand, within MPMX20_02470 at 2611.687 kb on - strand, within MPMX20_02470 at 2611.715 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.727 kb on + strand, within MPMX20_02470 at 2611.735 kb on - strand, within MPMX20_02470 at 2611.735 kb on - strand, within MPMX20_02470 at 2611.755 kb on + strand, within MPMX20_02470 at 2611.787 kb on + strand at 2611.891 kb on + strand, within MPMX20_02471 at 2611.894 kb on + strand, within MPMX20_02471 at 2611.899 kb on - strand, within MPMX20_02471 at 2611.914 kb on - strand, within MPMX20_02471 at 2611.940 kb on - strand, within MPMX20_02471 at 2611.947 kb on + strand, within MPMX20_02471 at 2612.024 kb on + strand at 2612.026 kb on + strand at 2612.034 kb on - strand at 2612.038 kb on + strand at 2612.040 kb on + strand at 2612.046 kb on - strand at 2612.154 kb on - strand, within MPMX20_02472 at 2612.164 kb on + strand, within MPMX20_02472 at 2612.206 kb on - strand, within MPMX20_02472 at 2612.241 kb on - strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.492 kb on - strand, within MPMX20_02472 at 2612.513 kb on - strand, within MPMX20_02472 at 2612.549 kb on - strand, within MPMX20_02472 at 2612.558 kb on + strand, within MPMX20_02472 at 2612.561 kb on - strand, within MPMX20_02472 at 2612.563 kb on + strand, within MPMX20_02472 at 2612.571 kb on - strand, within MPMX20_02472 at 2612.698 kb on - strand at 2612.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030 remove 2,610,444 + MPMX20_02468 0.66 -1.4 2,610,444 + MPMX20_02468 0.66 -1.0 2,610,447 + MPMX20_02468 0.66 -2.2 2,610,462 + MPMX20_02468 0.67 -1.1 2,610,463 - MPMX20_02468 0.67 +1.5 2,610,467 + MPMX20_02468 0.67 -1.4 2,610,467 + MPMX20_02468 0.67 -0.1 2,610,468 + MPMX20_02468 0.67 -0.2 2,610,468 + MPMX20_02468 0.67 +0.4 2,610,476 + MPMX20_02468 0.68 -1.4 2,610,477 + MPMX20_02468 0.68 -0.2 2,610,477 + MPMX20_02468 0.68 -0.1 2,610,477 + MPMX20_02468 0.68 -0.7 2,610,477 + MPMX20_02468 0.68 +0.3 2,610,484 - MPMX20_02468 0.68 -1.5 2,610,486 + MPMX20_02468 0.68 +0.4 2,610,486 + MPMX20_02468 0.68 +0.2 2,610,487 + MPMX20_02468 0.69 -1.2 2,610,487 + MPMX20_02468 0.69 -0.4 2,610,494 + MPMX20_02468 0.69 +1.0 2,610,494 + MPMX20_02468 0.69 +0.9 2,610,501 + MPMX20_02468 0.69 -0.1 2,610,501 + MPMX20_02468 0.69 -2.5 2,610,502 - MPMX20_02468 0.69 -2.8 2,610,505 + MPMX20_02468 0.70 -1.0 2,610,512 + MPMX20_02468 0.70 -0.4 2,610,519 + MPMX20_02468 0.70 -1.6 2,610,524 + MPMX20_02468 0.71 -0.5 2,610,524 + MPMX20_02468 0.71 -0.9 2,610,534 + MPMX20_02468 0.71 +0.3 2,610,544 + MPMX20_02468 0.72 +0.7 2,610,551 + MPMX20_02468 0.72 +0.4 2,610,551 + MPMX20_02468 0.72 -0.9 2,610,559 + MPMX20_02468 0.73 +0.7 2,610,570 + MPMX20_02468 0.73 +1.9 2,610,570 + MPMX20_02468 0.73 -0.5 2,610,589 + MPMX20_02468 0.75 -1.3 2,610,589 + MPMX20_02468 0.75 -1.5 2,610,589 + MPMX20_02468 0.75 +0.5 2,610,589 + MPMX20_02468 0.75 -0.2 2,610,589 + MPMX20_02468 0.75 -1.2 2,610,589 + MPMX20_02468 0.75 +0.9 2,610,589 + MPMX20_02468 0.75 +0.1 2,610,589 + MPMX20_02468 0.75 -0.3 2,610,589 + MPMX20_02468 0.75 +1.9 2,610,589 + MPMX20_02468 0.75 -1.6 2,610,589 + MPMX20_02468 0.75 -0.7 2,610,589 + MPMX20_02468 0.75 -1.3 2,610,595 + MPMX20_02468 0.75 -0.5 2,610,600 + MPMX20_02468 0.75 -0.6 2,610,602 + MPMX20_02468 0.75 +1.2 2,610,607 + MPMX20_02468 0.76 -1.0 2,610,664 + MPMX20_02468 0.79 +0.9 2,610,666 + MPMX20_02468 0.79 -0.1 2,610,672 - MPMX20_02468 0.79 -0.5 2,610,687 + MPMX20_02468 0.80 -0.8 2,610,723 + MPMX20_02468 0.82 +1.5 2,610,770 + MPMX20_02468 0.85 +1.2 2,611,043 + -0.3 2,611,051 - -0.7 2,611,051 - -1.5 2,611,104 - +0.0 2,611,104 - +0.6 2,611,104 - +0.9 2,611,104 - -0.6 2,611,104 - +0.9 2,611,104 - -0.6 2,611,104 - -0.8 2,611,104 - -0.6 2,611,104 - -0.3 2,611,104 - +2.9 2,611,104 - -1.1 2,611,111 + +0.5 2,611,114 - -0.8 2,611,114 - -0.1 2,611,114 - +0.6 2,611,114 - -1.4 2,611,114 - -0.3 2,611,114 - -0.5 2,611,114 - +0.9 2,611,114 - -0.5 2,611,114 - -0.2 2,611,114 - -2.8 2,611,114 - -1.1 2,611,114 - -0.3 2,611,114 - +0.9 2,611,114 - -0.6 2,611,114 - -1.8 2,611,114 - +0.4 2,611,114 - +0.4 2,611,119 - -0.3 2,611,119 - +0.5 2,611,124 - -0.1 2,611,124 - -0.5 2,611,126 - -0.5 2,611,126 - +0.5 2,611,126 - -0.2 2,611,126 - +1.2 2,611,126 - -0.8 2,611,126 - -0.0 2,611,126 - -0.5 2,611,126 - +1.0 2,611,126 - +0.4 2,611,126 - -0.8 2,611,126 - +0.0 2,611,126 - -1.0 2,611,126 - -2.0 2,611,126 - +0.9 2,611,126 - +0.6 2,611,126 - -0.9 2,611,126 - +1.4 2,611,126 - +0.2 2,611,126 - -0.8 2,611,126 - -0.3 2,611,126 - +0.7 2,611,126 - -0.9 2,611,126 - -0.5 2,611,126 - -0.2 2,611,126 - -0.2 2,611,126 - -0.7 2,611,126 - -0.8 2,611,126 - +0.3 2,611,126 - +4.2 2,611,126 - -0.8 2,611,126 - -2.2 2,611,126 - +1.0 2,611,126 - -0.7 2,611,126 - +1.2 2,611,126 - -0.1 2,611,126 - -0.4 2,611,126 - -0.6 2,611,150 - -0.3 2,611,163 - -2.2 2,611,169 - -1.2 2,611,169 - -0.9 2,611,169 - +0.7 2,611,169 - +0.1 2,611,174 - -0.3 2,611,174 - +0.3 2,611,174 - -0.0 2,611,174 - -0.4 2,611,174 - -0.6 2,611,174 - -0.6 2,611,174 - +2.5 2,611,174 - -1.4 2,611,187 + +0.7 2,611,188 + +0.5 2,611,188 + -1.0 2,611,195 - +0.0 2,611,195 - +0.3 2,611,195 - -0.0 2,611,195 - -1.0 2,611,195 - +0.7 2,611,195 - +0.3 2,611,195 - +0.1 2,611,195 - -0.5 2,611,195 - -0.8 2,611,195 - +0.5 2,611,195 - -0.6 2,611,195 - -0.7 2,611,195 - +0.6 2,611,195 - +0.3 2,611,195 - +0.8 2,611,195 - -1.2 2,611,195 - +0.9 2,611,195 - -1.2 2,611,195 - -0.0 2,611,195 - -0.0 2,611,195 - -0.1 2,611,195 - +0.7 2,611,195 - -0.5 2,611,196 - +0.9 2,611,196 - -0.4 2,611,196 - +0.4 2,611,196 - -0.2 2,611,196 - +1.3 2,611,196 - +0.0 2,611,196 - -0.4 2,611,196 - -1.8 2,611,196 - +0.9 2,611,196 - +0.1 2,611,196 - +0.1 2,611,219 - +0.1 2,611,224 - -0.9 2,611,259 - MPMX20_02469 0.24 +1.2 2,611,266 - MPMX20_02469 0.27 -0.5 2,611,266 - MPMX20_02469 0.27 -0.6 2,611,273 + MPMX20_02469 0.30 +2.3 2,611,285 - MPMX20_02469 0.35 -0.1 2,611,285 - MPMX20_02469 0.35 -0.7 2,611,309 + MPMX20_02469 0.46 +0.9 2,611,309 - MPMX20_02469 0.46 -1.2 2,611,352 - MPMX20_02469 0.65 +3.0 2,611,357 + MPMX20_02469 0.67 +0.2 2,611,359 - MPMX20_02469 0.68 -1.6 2,611,369 - MPMX20_02469 0.72 +0.2 2,611,373 - MPMX20_02469 0.74 +0.7 2,611,397 - MPMX20_02469 0.85 -0.6 2,611,398 - MPMX20_02469 0.85 -0.7 2,611,398 - MPMX20_02469 0.85 -0.5 2,611,419 + -0.0 2,611,440 + +0.2 2,611,469 + -0.8 2,611,469 + -1.2 2,611,477 - -0.8 2,611,486 - MPMX20_02470 0.12 -0.6 2,611,515 + MPMX20_02470 0.20 -0.3 2,611,520 + MPMX20_02470 0.21 +0.5 2,611,523 - MPMX20_02470 0.22 +0.2 2,611,564 - MPMX20_02470 0.34 -0.3 2,611,630 + MPMX20_02470 0.52 -1.0 2,611,673 + MPMX20_02470 0.64 -0.0 2,611,679 + MPMX20_02470 0.66 -1.0 2,611,687 - MPMX20_02470 0.68 -0.1 2,611,715 + MPMX20_02470 0.76 -0.5 2,611,727 + MPMX20_02470 0.79 +0.8 2,611,727 + MPMX20_02470 0.79 +0.2 2,611,727 + MPMX20_02470 0.79 -1.0 2,611,727 + MPMX20_02470 0.79 +0.6 2,611,735 - MPMX20_02470 0.81 -0.8 2,611,735 - MPMX20_02470 0.81 -0.8 2,611,755 + MPMX20_02470 0.87 -0.5 2,611,787 + -0.3 2,611,891 + MPMX20_02471 0.40 +0.1 2,611,894 + MPMX20_02471 0.41 +0.9 2,611,899 - MPMX20_02471 0.43 -1.3 2,611,914 - MPMX20_02471 0.50 -1.5 2,611,940 - MPMX20_02471 0.61 -1.1 2,611,947 + MPMX20_02471 0.64 -0.9 2,612,024 + -0.2 2,612,026 + -0.8 2,612,034 - -0.3 2,612,038 + -0.5 2,612,040 + +0.9 2,612,046 - -2.5 2,612,154 - MPMX20_02472 0.11 -0.8 2,612,164 + MPMX20_02472 0.12 -1.8 2,612,206 - MPMX20_02472 0.19 -0.8 2,612,241 - MPMX20_02472 0.24 -1.8 2,612,269 + MPMX20_02472 0.28 +0.2 2,612,269 + MPMX20_02472 0.28 -0.7 2,612,484 + MPMX20_02472 0.60 +1.5 2,612,484 + MPMX20_02472 0.60 -1.0 2,612,492 - MPMX20_02472 0.61 -2.1 2,612,513 - MPMX20_02472 0.65 -1.7 2,612,549 - MPMX20_02472 0.70 -1.0 2,612,558 + MPMX20_02472 0.71 +0.9 2,612,561 - MPMX20_02472 0.72 -1.4 2,612,563 + MPMX20_02472 0.72 -1.2 2,612,571 - MPMX20_02472 0.73 -1.3 2,612,698 - -1.8 2,612,698 - -1.6
Or see this region's nucleotide sequence